MELO3C010562 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010562
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionER-type Ca2+-ATPase 2
Locationchr7 : 6999246 .. 6999515 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCATCCTGCAACAAATGGCCTCCTAAACAAGTCTTTTCCCGATTACGATGAACTATCATATGCGTTCGGGAAAGATTATGCGATAGGGACACATGCAGAGACATTCGCTGATGTCAGGTCCAATGTGTCGGACGTGTATGAGGGATTTCCACTTGAAGATGGAAACGATATGGAGATCCTTACTATGTACAGCTTGGGACTTAACATGTCGCCTAAGGACATAATGGACGCACAACCCCGTCGATCAAGCGACTGTTATAGGGGTTAA

mRNA sequence

AACCATCCTGCAACAAATGGCCTCCTAAACAAGTCTTTTCCCGATTACGATGAACTATCATATGCGTTCGGGAAAGATTATGCGATAGGGACACATGCAGAGACATTCGCTGATGTCAGGTCCAATGTGTCGGACGTGTATGAGGGATTTCCACTTGAAGATGGAAACGATATGGAGATCCTTACTATGTACAGCTTGGGACTTAACATGTCGCCTAAGGACATAATGGACGCACAACCCCGTCGATCAAGCGACTGTTATAGGGGTTAA

Coding sequence (CDS)

AACCATCCTGCAACAAATGGCCTCCTAAACAAGTCTTTTCCCGATTACGATGAACTATCATATGCGTTCGGGAAAGATTATGCGATAGGGACACATGCAGAGACATTCGCTGATGTCAGGTCCAATGTGTCGGACGTGTATGAGGGATTTCCACTTGAAGATGGAAACGATATGGAGATCCTTACTATGTACAGCTTGGGACTTAACATGTCGCCTAAGGACATAATGGACGCACAACCCCGTCGATCAAGCGACTGTTATAGGGGTTAA

Protein sequence

NHPATNGLLNKSFPDYDELSYAFGKDYAIGTHAETFADVRSNVSDVYEGFPLEDGNDMEILTMYSLGLNMSPKDIMDAQPRRSSDCYRG*
Homology
[Close]
BLAST of MELO3C010562 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-14
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = 1 

Query: 1   NHPATNGLLNKSFPDYDELSYAFGKDYAIGTHAETFADVRSNVSDVYEGFPLEDGNDMEI 60
           +HPA  GLLNKSF  YDELSY FGKD A G  AE+FAD+ SN    Y+    +   D + 
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 525

Query: 61  LTMYSLGLNMSPKDIMDAQPRRSSD 86
             MYS GLNMSP D+M+ +  R S+
Sbjct: 526 PPMYSPGLNMSPDDLMETRTARVSE 550

[Close]
BLAST of MELO3C010562 vs. TrEMBL
Match: A5Y732_CUCME (Transposase OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.2e-11
Identity = 39/70 (55.71%), Postives = 43/70 (61.43%), Query Frame = 1 

Query: 2   HPATNGLLNKSFPDYDELSYAFGKDYAIGTHAETFADVRSNVSDVYEGFPLEDGNDMEIL 61
           HPA  GLLNK FP YDEL Y F +D   G   +TF +V SN    YEGF   D NDM+  
Sbjct: 278 HPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMKNP 337

Query: 62  TMYSLGLNMS 72
           TMYS G NMS
Sbjct: 338 TMYSQGFNMS 347

[Close]
BLAST of MELO3C010562 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-10
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 

Query: 3   PATNGLLNKSFPDYDELSYAFGKDYAIGTHAETFADVRSN-VSDVYEGFPLEDGNDMEIL 62
           PA  GLLN  FP YDEL+Y FG+D A G  AETFADV SN     Y+ F + DGN+ +  
Sbjct: 433 PAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFP 492

Query: 63  TMYSLGLNMSPKDIMDAQPRRSSD 86
            +YS G+++   D+  ++P R+S+
Sbjct: 493 PVYSRGVDILQDDVRASRPSRASE 515

[Close]
BLAST of MELO3C010562 vs. TrEMBL
Match: A0A0A0KQ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 38/88 (43.18%), Postives = 44/88 (50.00%), Query Frame = 1 

Query: 2   HPATNGLLNKSFPDYDELSYAFGKDYAIGTHAETFADVRSNVSDVYEGFPLEDGNDMEIL 61
           +PAT GLLNK FP Y  LSY FGKD+  G              D     P EDG  +E  
Sbjct: 59  YPATKGLLNKVFPHYGMLSYVFGKDHTKGPVWRYSRTSGPTCKDPSACVPTEDGLKIEFP 118

Query: 62  TMYSLGLNMSPKDIMDAQPRRSSDCYRG 90
           TM S  +N+S  D+M  Q  R SDC  G
Sbjct: 119 TMCSPRMNLSLDDMMVGQSGRFSDCRSG 146

[Close]
BLAST of MELO3C010562 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 6.5e-17
Identity = 47/84 (55.95%), Postives = 54/84 (64.29%), Query Frame = 1 

Query: 2   HPATNGLLNKSFPDYDELSYAFGKDYAIGTHAETFADVRSNVSDVYEGFPLEDGNDMEIL 61
           HP    LLNKSFP YDEL+Y F KD A G   ETF D+ SN    YEGF   DGNDMEI 
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIP 91

Query: 62  TMYSLGLNMSPKDIMDAQPRRSSD 86
           T+YS G NMS +D+   +P  +SD
Sbjct: 92  TIYSQGFNMSQEDVWAPRPSSASD 115

[Close]
BLAST of MELO3C010562 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 5.5e-16
Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 1   NHPATNGLLNKSFPDYDELSYAFGKDYAIGTHAETFADVRSNVSDVYEGFPLEDGNDMEI 60
           +HPA  GLLNKSFP YDELSY F KD+A G  AE+FADV SN    Y+ F     +D + 
Sbjct: 60  SHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTDF 119

Query: 61  LTMYSLGLNMSPKDIMDAQPRRSSD 86
             MYS GLNMSP ++M  +  R S+
Sbjct: 120 QPMYSRGLNMSPDELMGTRTARVSE 144

[Close]
BLAST of MELO3C010562 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 9.4e-16
Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 1   NHPATNGLLNKSFPDYDELSYAFGKDYAIGTHAETFADVRSNVSDVYEGFPLEDGNDMEI 60
           +HP   GLLNKSF  YDELSY FGKD A G  AE+FAD+ SN    Y+ FP +   D + 
Sbjct: 452 SHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNHPAGYDAFPADAAPDTDF 511

Query: 61  LTMYSLGLNMSPKDIMDAQPRRSSD 86
             MYSLGLNMS  D+M+ +  R S+
Sbjct: 512 PPMYSLGLNMSADDLMETRTARVSE 536

[Close]
BLAST of MELO3C010562 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-15
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 1 

Query: 1   NHPATNGLLNKSFPDYDELSYAFGKDYAIGTHAETFADVRSNVSDVY-EGFPLEDGNDME 60
           +HPA  GLL+KSFP YD+LSY FG D A G H+ETFAD  SNVS+++ +G PL D ++ +
Sbjct: 71  SHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQD 130

Query: 61  ILTMYSLGLNMSPKDIMDAQPRRSSD 86
           ILT+YS G++MS  +I   +  ++S+
Sbjct: 131 ILTIYSQGVHMSLDEIFGIRAGQASE 156

[Close]
BLAST of MELO3C010562 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 1   NHPATNGLLNKSFPDYDELSYAFGKDYAIGTHAETFADVRSNVSDVY-EGFPLEDGNDME 60
           +HPA  GLL+KSFP YD+LSY FGKD A G  +ETF +V SNVS+++ +  PL D +D +
Sbjct: 114 SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDED 173

Query: 61  ILTMYSLGLNMSPKDIMDAQPRRSSD 86
           I TMYS G++MSP ++   +  ++S+
Sbjct: 174 IPTMYSQGVHMSPDEMFGIRAGQASE 199

The following BLAST results are available for this feature:
BLAST of MELO3C010562 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB5_CUCME2.8e-1451.76Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5Y732_CUCME2.2e-1155.71Transposase OS=Cucumis melo PE=4 SV=1[more]
E5GBB2_CUCME1.9e-1046.43Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KQ83_CUCSA1.5e-0743.18Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1[more]
BLAST of MELO3C010562 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068476|ref|XP_008444620.1|6.5e-1755.95PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
gi|659123900|ref|XP_008461893.1|5.5e-1652.94PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
gi|659126986|ref|XP_008463462.1|9.4e-1652.94PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo][more]
gi|659113923|ref|XP_008456820.1|2.7e-1551.16PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo][more]
gi|659082641|ref|XP_008441954.1|1.0e-1450.00PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010562T1MELO3C010562T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010562Wax gourdmewgoB596
MELO3C010562Cucumber (Gy14) v1cgymeB041
MELO3C010562Cucurbita maxima (Rimu)cmameB036
MELO3C010562Cucurbita maxima (Rimu)cmameB433
MELO3C010562Cucurbita maxima (Rimu)cmameB448
MELO3C010562Cucurbita moschata (Rifu)cmomeB025
MELO3C010562Cucurbita moschata (Rifu)cmomeB423
MELO3C010562Cucurbita moschata (Rifu)cmomeB439
MELO3C010562Wild cucumber (PI 183967)cpimeB317
MELO3C010562Cucumber (Chinese Long) v2cumeB321
MELO3C010562Watermelon (Charleston Gray)mewcgB462
MELO3C010562Watermelon (97103) v1mewmB544
MELO3C010562Cucurbita pepo (Zucchini)cpemeB539
MELO3C010562Cucurbita pepo (Zucchini)cpemeB535
MELO3C010562Cucurbita pepo (Zucchini)cpemeB730
MELO3C010562Bottle gourd (USVL1VR-Ls)lsimeB324
MELO3C010562Silver-seed gourdcarmeB0318
MELO3C010562Silver-seed gourdcarmeB1012
MELO3C010562Cucumber (Chinese Long) v3cucmeB325
MELO3C010562Watermelon (97103) v2mewmbB472