MELO3C010406 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010406
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein
Location	chr7 : 10173084 .. 10173482 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGATAGATCAAGCCAGTCGAGCGATGCTAGGATGGTCTCTAGCAGACAAAAAAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGACCTGATTCGCAAATGTATGGAGGTTGCGACTGATCAGCTGAGAACCATTGTAGAATGGCCAGAGAAAGCTATGAGCCGGGAGGACGTGATGCCGGTGCAGGTGATTGAGCTTTCGGAGTCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCACTCAAAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAAGGTCCCTCCTTGGTAG

mRNA sequence

ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGATAGATCAAGCCAGTCGAGCGATGCTAGGATGGTCTCTAGCAGACAAAAAAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGACCTGATTCGCAAATGTATGGAGGTTGCGACTGATCAGCTGAGAACCATTGTAGAATGGCCAGAGAAAGCTATGAGCCGGGAGGACGTGATGCCGGTGCAGGTGATTGAGCTTTCGGAGTCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCACTCAAAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAAGGTCCCTCCTTGGTAG

Coding sequence (CDS)

ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGATAGATCAAGCCAGTCGAGCGATGCTAGGATGGTCTCTAGCAGACAAAAAAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGACCTGATTCGCAAATGTATGGAGGTTGCGACTGATCAGCTGAGAACCATTGTAGAATGGCCAGAGAAAGCTATGAGCCGGGAGGACGTGATGCCGGTGCAGGTGATTGAGCTTTCGGAGTCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCACTCAAAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAAGGTCCCTCCTTGGTAG

Protein sequence

MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW*

Homology

[Close]

BLAST of MELO3C010406 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.0e-14
Identity = 44/130 (33.85%), Postives = 76/130 (58.46%), Query Frame = 1


Query: 2   EFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQ 61
           +FP M  P +NMSP D+M  R+++ S+ R VSS  KRKR     ++ D++R  +E   +Q
Sbjct: 524 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQ 583

Query: 62  LRTIVEWPEKAMSREDVMPV--QVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMF 121
           L  I EWP   + R+D      +++   E+IP LT+ ++ + + I+ + V   ++F+++ 
Sbjct: 584 LHRIAEWP--ILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVP 643

Query: 122 DSMKTAYCKV 130
           D MK  YC +
Sbjct: 644 DHMKYPYCSL 651

[Close]

BLAST of MELO3C010406 vs. TrEMBL
Match: A0A0A0KFW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 38/119 (31.93%), Postives = 60/119 (50.42%), Query Frame = 1


Query: 11  MNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPE 70
           ++M P +M+  R  QSS+ R  SS  KRK   Q  E  D+I   MEV  DQL+ I  W +
Sbjct: 6   LDMPPDEMLGTR--QSSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAIANWSK 65

Query: 71  KAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAYCKV 130
           +  + E  + V+V++  + I  L   ++ K + I+   V     F+     +K  YC+V
Sbjct: 66  EKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEGFLSCPTKLKLEYCRV 122

[Close]

BLAST of MELO3C010406 vs. TrEMBL
Match: Q6E437_CUCME (ACT11D09.5 OS=Cucumis melo GN=ACT11D0.5 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 79  MPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAY 127
           M +++IE  ESI +LTI E SKCIMIV +KVSL R+FIKM D MK AY
Sbjct: 1   MAMRMIEHMESISSLTITESSKCIMIVTEKVSLMRNFIKMSDPMKAAY 48

[Close]

BLAST of MELO3C010406 vs. TrEMBL
Match: E5GBS5_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 1


Query: 11  MNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPE 70
           +NMSP + M  R  +S D R  SSR KRKR  + +E  ++I+  ME A DQL  IV+WP 
Sbjct: 114 LNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPI 173

Query: 71  KAMSREDVMPVQVIELSESIPNL 94
                  V   +V+   ++I  L
Sbjct: 174 LRNQDASVTQQEVVRQLQAIHEL 196

[Close]

BLAST of MELO3C010406 vs. TrEMBL
Match: E5GBB1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-06
Identity = 31/114 (27.19%), Postives = 57/114 (50.00%), Query Frame = 1


Query: 2   EFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQ 61
           + P M    ++M   +M   R+ Q+S+ R  SS  KRK+  +  E  ++I+  ME   DQ
Sbjct: 15  DIPTMYSQGVHMLSNEMFGIRADQASERRNCSSGSKRKQGSEHYEMVEVIKSAMEFGNDQ 74

Query: 62  LRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSF 116
           L+   +W +   S E  +  +V++  + IP L   +++K + I+ + V     F
Sbjct: 75  LKAFEDWSKDKHSTEVELHAEVVKQLQDIPELRSRDRAKLMQILFRSVEAIEGF 128

[Close]

BLAST of MELO3C010406 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 85.1 bits (209), Expect = 1.0e-13
Identity = 44/130 (33.85%), Postives = 76/130 (58.46%), Query Frame = 1


Query: 2   EFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQ 61
           +FP M  P +NMSP D+M  R+++ S+ R VSS  KRKR     ++ D++R  +E   +Q
Sbjct: 524 DFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQ 583

Query: 62  LRTIVEWPEKAMSREDVMPV--QVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMF 121
           L  I EWP   + R+D      +++   E+IP LT+ ++ + + I+ + V   ++F+++ 
Sbjct: 584 LHRIAEWP--ILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVP 643

Query: 122 DSMKTAYCKV 130
           D MK  YC +
Sbjct: 644 DHMKYPYCSL 651

[Close]

BLAST of MELO3C010406 vs. NCBI nr
Match: gi|659133698|ref|XP_008466863.1| (PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 5.0e-13
Identity = 42/130 (32.31%), Postives = 76/130 (58.46%), Query Frame = 1


Query: 2   EFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQ 61
           +F  M  P +NMSP D+M  R+++ S+ R VSS  KRKR     ++ D++R  +E   +Q
Sbjct: 376 DFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRIAIEYGNEQ 435

Query: 62  LRTIVEWPEKAMSREDVMPV--QVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMF 121
           L  I EWP   + R+D      +++   E+IP LT+ ++ + + I+   +   ++F+++ 
Sbjct: 436 LHRIAEWP--ILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMHIIMHNIDDMKAFLEVP 495

Query: 122 DSMKTAYCKV 130
           D+MK +YC +
Sbjct: 496 DNMKYSYCNI 503

[Close]

BLAST of MELO3C010406 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 40/128 (31.25%), Postives = 71/128 (55.47%), Query Frame = 1


Query: 2   EFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQ 61
           + P M    ++MSP +M   R+ Q+S+ R  SS  KRKR  ++ ET ++IR  ME   +Q
Sbjct: 173 DIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQ 232

Query: 62  LRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDS 121
           L+ I +WP++  + E  M  QV++  + IP L   +++K + I+ + +     F+ +   
Sbjct: 233 LKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTE 292

Query: 122 MKTAYCKV 130
           +K  YC +
Sbjct: 293 LKLEYCNI 300

[Close]

BLAST of MELO3C010406 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 5.1e-10
Identity = 40/130 (30.77%), Postives = 75/130 (57.69%), Query Frame = 1


Query: 2   EFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQ 61
           +F  M    +NMSP ++M  R+++ S+ R VSS  K+KR    +++ D++R  +E   +Q
Sbjct: 118 DFQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQ 177

Query: 62  LRTIVEWPEKAMSREDVMPV--QVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMF 121
           L  I EW    + R+D      +V+   E+IP LT+ ++ + + I+   V+  ++F+++ 
Sbjct: 178 LNRIAEW--HVLQRQDATQTRQEVVRQLEAIPELTLMDRCRLMRILIHNVNDMKAFLEVP 237

Query: 122 DSMKTAYCKV 130
           D+MK  YC +
Sbjct: 238 DNMK-PYCSI 244

[Close]

BLAST of MELO3C010406 vs. NCBI nr
Match: gi|659093674|ref|XP_008447655.1| (PREDICTED: casein kinase I-like [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-09
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 42  MQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKC 101
           MQ   T+ LIR  M+   DQL+ I  WPE+A  +ED +  +VI   +S P   +    KC
Sbjct: 1   MQNFVTFMLIRNAMDCVNDQLKVIANWPERASQKEDTLQREVIMQLQSNPQFCVEGSVKC 60

Query: 102 IMIVNQKVSLKRSFIKMFDSMKT 125
           +M+V QK+ L ++F+ + D MK+
Sbjct: 61  MMVVTQKLLLMKTFLDLPDEMKS 83

The following BLAST results are available for this feature:

BLAST of MELO3C010406 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB5_CUCME	7.0e-14	33.85	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KFW0_CUCSA	1.3e-07	31.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1	[more]
Q6E437_CUCME	1.4e-06	64.58	ACT11D09.5 OS=Cucumis melo GN=ACT11D0.5 PE=4 SV=1	[more]
E5GBS5_CUCME	2.4e-06	38.55	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB1_CUCME	7.0e-06	27.19	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of MELO3C010406 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136287\|gb\|ADN34114.1\|	1.0e-13	33.85	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659133698\|ref\|XP_008466863.1\|	5.0e-13	32.31	PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo]	[more]
gi\|659082641\|ref\|XP_008441954.1\|	1.1e-12	31.25	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659123900\|ref\|XP_008461893.1\|	5.1e-10	30.77	PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo]	[more]
gi\|659093674\|ref\|XP_008447655.1\|	7.4e-09	38.55	PREDICTED: casein kinase I-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000536	Nuclear hormone receptor, ligand-binding domain

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated
GO:0043401	steroid hormone mediated signaling pathway

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0043401	steroid hormone mediated signaling pathway
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010406T1	MELO3C010406T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000536	Nuclear hormone receptor, ligand-binding domain	GENE3D	G3DSA:1.10.565.10		coord: 14..68 score: 9.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010406	Cucurbita pepo (Zucchini)	cpemeB590
MELO3C010406	Cucumber (Gy14) v2	cgybmeB253
MELO3C010406	Silver-seed gourd	carmeB0333
MELO3C010406	Cucumber (Chinese Long) v3	cucmeB298
MELO3C010406	Wax gourd	mewgoB593
MELO3C010406	Cucurbita maxima (Rimu)	cmameB246
MELO3C010406	Cucurbita moschata (Rifu)	cmomeB234
MELO3C010406	Wild cucumber (PI 183967)	cpimeB292
MELO3C010406	Cucumber (Chinese Long) v2	cumeB298
MELO3C010406	Watermelon (Charleston Gray)	mewcgB491
MELO3C010406	Watermelon (97103) v1	mewmB520