MELO3C010404 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010404
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr7 : 10211492 .. 10212043 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTTCCAAAACTTTGACAGACAACATAGATGAGTTCAAGAAGACTGTTTCAGAATTTAAAAGTTTGGAGGATAAACTCAGTGATGAAAATGAAGTCTATGTTCTTCTAAATTCTCTACCCAAAGCTTACAAAGTGGTAAAAATTGCACCCAAATATGCTAAAGACTCAGTAAAAACAGATGCAATTGTATCAGCCATTAGAACAAGAGAATTAGAATTTCAGTTATCACAAAAAGAGCATCACAATGGAGATGGTTTATTTGTCAAAGGCAAACTTCAATCTAATCAGTGGAAAAACAGTAGCAACTCTCTTTCAAATGATGAAAAGAAGGCAAAACATAAGAAGAAATGTAAATATTGCAAGAAGAAGGGGCATCTAATCCAAGATTGTTTTTTTCTTAAGAAAAAGAATCAAGAGAAAGAAAAAGATTCAAAAGGAAAGAAACCCAAAACCTCTATAGTAGAAAGCTCATTTATCTATTCTGATGCTTTGGCATCAACTCAAGACCAAGCCAATCATGTTACCCCCTTTGGTAAACATGATTAG

mRNA sequence

ATGGATCCTTCCAAAACTTTGACAGACAACATAGATGAGTTCAAGAAGACTGTTTCAGAATTTAAAAGTTTGGAGGATAAACTCAGTGATGAAAATGAAGTCTATGTTCTTCTAAATTCTCTACCCAAAGCTTACAAAGTGGTAAAAATTGCACCCAAATATGCTAAAGACTCAGTAAAAACAGATGCAATTGTATCAGCCATTAGAACAAGAGAATTAGAATTTCAGTTATCACAAAAAGAGCATCACAATGGAGATGGTTTATTTGTCAAAGGCAAACTTCAATCTAATCAGTGGAAAAACAGTAGCAACTCTCTTTCAAATGATGAAAAGAAGGCAAAACATAAGAAGAAATGTAAATATTGCAAGAAGAAGGGGCATCTAATCCAAGATTGTTTTTTTCTTAAGAAAAAGAATCAAGAGAAAGAAAAAGATTCAAAAGGAAAGAAACCCAAAACCTCTATAGTAGAAAGCTCATTTATCTATTCTGATGCTTTGGCATCAACTCAAGACCAAGCCAATCATGTTACCCCCTTTGGTAAACATGATTAG

Coding sequence (CDS)

ATGGATCCTTCCAAAACTTTGACAGACAACATAGATGAGTTCAAGAAGACTGTTTCAGAATTTAAAAGTTTGGAGGATAAACTCAGTGATGAAAATGAAGTCTATGTTCTTCTAAATTCTCTACCCAAAGCTTACAAAGTGGTAAAAATTGCACCCAAATATGCTAAAGACTCAGTAAAAACAGATGCAATTGTATCAGCCATTAGAACAAGAGAATTAGAATTTCAGTTATCACAAAAAGAGCATCACAATGGAGATGGTTTATTTGTCAAAGGCAAACTTCAATCTAATCAGTGGAAAAACAGTAGCAACTCTCTTTCAAATGATGAAAAGAAGGCAAAACATAAGAAGAAATGTAAATATTGCAAGAAGAAGGGGCATCTAATCCAAGATTGTTTTTTTCTTAAGAAAAAGAATCAAGAGAAAGAAAAAGATTCAAAAGGAAAGAAACCCAAAACCTCTATAGTAGAAAGCTCATTTATCTATTCTGATGCTTTGGCATCAACTCAAGACCAAGCCAATCATGTTACCCCCTTTGGTAAACATGATTAG

Protein sequence

MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWKNSSNSLSNDEKKAKHKKKCKYCKKKGHLIQDCFFLKKKNQEKEKDSKGKKPKTSIVESSFIYSDALASTQDQANHVTPFGKHD*

Homology

[Close]

BLAST of MELO3C010404 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-07
Identity = 32/137 (23.36%), Postives = 65/137 (47.45%), Query Frame = 1


Query: 1   MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVK 60
           M        +++ F   +++  +L  K+ +E++  +LLNSLP +Y  +     + K +++
Sbjct: 112 MSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIE 171

Query: 61  TDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWKNSSNSLSNDEKKAKHKKK-- 120
              + SA+   E   ++ +K  + G  L  +G+ +S Q  +++   S    K+K++ K  
Sbjct: 172 LKDVTSALLLNE---KMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSR 231

Query: 121 ---CKYCKKKGHLIQDC 133
              C  C + GH  +DC
Sbjct: 232 VRNCYNCNQPGHFKRDC 245

[Close]

BLAST of MELO3C010404 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-06
Identity = 41/152 (26.97%), Postives = 73/152 (48.03%), Query Frame = 1


Query: 6   TLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVKTDAIV 65
           +L  +   F + +SE  +   K+ + +++  LL +LP  Y  +  A +   +   T A V
Sbjct: 113 SLLSHFHIFDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFV 172

Query: 66  SAIRTRELEFQLSQKEHHNGDGLFVKGKL---QSNQWKNS--SNSLSNDEK----KAKHK 125
              + R L+ ++  K  HN     V   +    +N +KN+   N ++  +K     +K+K
Sbjct: 173 ---KNRLLDQEIKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYK 232

Query: 126 KKCKYCKKKGHLIQDCFFLKK----KNQEKEK 145
            KC +C ++GH+ +DCF  K+    KN+E EK
Sbjct: 233 VKCHHCGREGHIKKDCFHYKRILNNKNKENEK 261

[Close]

BLAST of MELO3C010404 vs. TrEMBL
Match: Q9SJU6_ARATH (Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=At2g21310 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-16
Identity = 52/151 (34.44%), Postives = 87/151 (57.62%), Query Frame = 1


Query: 1   MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVK 60
           M  S T+ +N+++F K +S+ ++++  + DE++  VLL SLPK +  +K   KY K ++ 
Sbjct: 124 MSDSMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKTTLA 183

Query: 61  TDAIVSAIRTRELEFQLSQKEHHN-GDGLFVKGKLQSNQW-KNSSNSLSNDEKKAKHKKK 120
            D I  AIR++ LE   S K   N  D LFV+ + +S +  K+S  + S    K++ KK 
Sbjct: 184 LDEITGAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSERNKSQSRSKSREKKV 243

Query: 121 CKYCKKKGHLIQDCFFLKKKNQEKEKDSKGK 150
           C  C K+GH  + C+  K+KN++     KG+
Sbjct: 244 CWVCGKEGHFKKQCYVWKEKNKKGNNSEKGE 274

[Close]

BLAST of MELO3C010404 vs. TrEMBL
Match: O82196_ARATH (Copia-like retroelement pol polyprotein OS=Arabidopsis thaliana GN=At2g19840 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.6e-16
Identity = 48/141 (34.04%), Postives = 85/141 (60.28%), Query Frame = 1


Query: 1   MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVK 60
           M  SKTL +N+DEF+K +S+  +L+ ++ DE +  ++L++LP +Y ++K   KY ++ +K
Sbjct: 97  MQDSKTLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREGIK 156

Query: 61  TDAIVSAIRTRELEFQ-LSQKEHHNGDGLFVKGKLQSNQWKNSSNSLSNDEKKAKHKKKC 120
            D ++SA +++ELE +  S      G+GL+V+GK Q+          S+  K  + KK C
Sbjct: 157 LDDVISAAKSKELELRDSSGGSRPVGEGLYVRGKSQARG--------SDGPKSTEGKKVC 216

Query: 121 KYCKKKGHLIQDCFFLKKKNQ 141
             C K+GH  + C+   +KN+
Sbjct: 217 WICGKEGHFKRQCYKWLEKNK 229

[Close]

BLAST of MELO3C010404 vs. TrEMBL
Match: A5ARG5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043292 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 47/130 (36.15%), Postives = 79/130 (60.77%), Query Frame = 1


Query: 1   MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVK 60
           M   K++ + IDEF K V + +SL  K+ DE++  +LLNSLPK +  ++   KY+KDS+ 
Sbjct: 56  MHEKKSIDEIIDEFTKLVVDLESLCVKIEDEDQAVLLLNSLPKVFDQLRDTLKYSKDSLS 115

Query: 61  TDAIVSAIRTRELEFQLSQKEHHNGDGLFVKG---KLQSNQWKNSSNSLSNDEKKAKHKK 120
            + +VSAI  ++++ ++ +    + +GL V+G   K  +NQ  N   S S  + K+K  +
Sbjct: 116 LEGVVSAIHAKKMDIRVERIGTTSSEGLVVRGRPKKRNNNQKGNHDKSKSKSKSKSKFTR 175

Query: 121 KCKYCKKKGH 128
           KC +C K+GH
Sbjct: 176 KCFHCHKEGH 185

[Close]

BLAST of MELO3C010404 vs. TrEMBL
Match: Q1KUM3_9ROSI (Putative uncharacterized protein OS=Tarenaya spinosa PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-15
Identity = 52/150 (34.67%), Postives = 87/150 (58.00%), Query Frame = 1


Query: 1   MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVK 60
           MD S+T+ +N+D F+K +S+  SL  K+ +E +   LLNSLP AY+ ++   KY++ ++ 
Sbjct: 151 MDSSRTIEENLDIFQKLLSDLHSLNVKVEEEYQAVYLLNSLPPAYEQLREVLKYSRATIS 210

Query: 61  TDAIVSAIRTRELEFQLSQ--KEHHNGDGLFVKGKLQSNQWKNSSNSLSNDEKKAKHKKK 120
            + + +A R +ELE  L+Q       G+GL VKGK + +            +KKAK + +
Sbjct: 211 VEEVKAAARMKELEL-LAQGTLTRGTGEGLVVKGKPEKS---------GGGKKKAKDQVE 270

Query: 121 CKYCKKKGHLIQDCFFLKKKNQEKEKDSKG 149
           C YC KKGH  ++C   + +  ++E + KG
Sbjct: 271 CWYCGKKGHYKKEC---RSRRAKEETEGKG 287

[Close]

BLAST of MELO3C010404 vs. TrEMBL
Match: A0A151STM6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_004437 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 52/160 (32.50%), Postives = 90/160 (56.25%), Query Frame = 1


Query: 7   LTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAK-DSVKTDAIV 66
           +  +++EF   + + +++E K+ DE++  +L+ SLP  YK  K    Y+  D++  + + 
Sbjct: 95  IQSHLNEFNSIIMDLENIEIKIDDEDKAVLLIVSLPSTYKHFKEIMLYSNNDTLSFEDVK 154

Query: 67  SAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWKNSSNSLSNDEKKAKHKKKCKYCKKK 126
           S + ++E +F L       G+GL V+G+ Q     ++  S S   ++ K  K C+YCKK 
Sbjct: 155 SNLLSKE-KFDLDIHSEDKGEGLSVRGRTQEKGSTSNKKSRSKSRRR-KTNKTCRYCKKF 214

Query: 127 GHLIQDCFFLKKKNQEKEKDSKGKKPKTSIVESSFIYSDA 166
           GH I DCF LKKK   +E+  KGK P    VE++ + +D+
Sbjct: 215 GHDISDCFILKKK---QERQEKGKNP----VEAANVETDS 245

[Close]

BLAST of MELO3C010404 vs. NCBI nr
Match: gi|747053728|ref|XP_011073037.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Sesamum indicum])

HSP 1 Score: 95.9 bits (237), Expect = 7.8e-17
Identity = 53/199 (26.63%), Postives = 101/199 (50.75%), Query Frame = 1


Query: 1   MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVK 60
           +D SK + +N+D+F K + + K   DK  DE    VLLN++P+++  VK A KY +DS+ 
Sbjct: 108 LDLSKNIDENLDDFTKLIQDIKLAGDKYIDEYSPIVLLNAIPESFSDVKAAIKYGRDSIN 167

Query: 61  TDAIVSAIRTRELEFQLSQKEHHNGDGLFVKGKLQSNQWKNSSNSLSNDEKKAKHKK--- 120
            + +V+ ++++EL+ ++++    + +   V+G+ +   + +  NS S  + K    K   
Sbjct: 168 LETVVNGLKSKELDLKVNKPSQSHYEINSVRGRTRFGNFNSRYNSRSRSKTKTNRSKSRP 227

Query: 121 -------------KCKYCKKKGHLIQDCFFLKKKNQEKEKDSKGKKPKTSIVESSFIYSD 180
                        +C  C  KGH I+DC   +++N+++  D K K    SI  +  ++  
Sbjct: 228 RETNLRDDKIRDRRCYNCGTKGHYIKDCRKPRRENRDRNYDDKEKVSNVSIESNGEVF-- 287

Query: 181 ALASTQDQANHVTPFGKHD 184
                  +AN V+ F  H+
Sbjct: 288 ----VVYEANSVSTFDMHE 300

[Close]

BLAST of MELO3C010404 vs. NCBI nr
Match: gi|4567266|gb|AAD23679.1| (putative retroelement pol polyprotein [Arabidopsis thaliana])

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-16
Identity = 52/151 (34.44%), Postives = 87/151 (57.62%), Query Frame = 1


Query: 1   MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVK 60
           M  S T+ +N+++F K +S+ ++++  + DE++  VLL SLPK +  +K   KY K ++ 
Sbjct: 124 MSDSMTIEENVNDFFKLISDLENVKVSVPDEDQAIVLLMSLPKQFDQLKDTLKYGKTTLA 183

Query: 61  TDAIVSAIRTRELEFQLSQKEHHN-GDGLFVKGKLQSNQW-KNSSNSLSNDEKKAKHKKK 120
            D I  AIR++ LE   S K   N  D LFV+ + +S +  K+S  + S    K++ KK 
Sbjct: 184 LDEITGAIRSKVLELGASGKMLKNSSDALFVQDRGRSEKRDKSSERNKSQSRSKSREKKV 243

Query: 121 CKYCKKKGHLIQDCFFLKKKNQEKEKDSKGK 150
           C  C K+GH  + C+  K+KN++     KG+
Sbjct: 244 CWVCGKEGHFKKQCYVWKEKNKKGNNSEKGE 274

[Close]

BLAST of MELO3C010404 vs. NCBI nr
Match: gi|3687234|gb|AAC62132.1| (copia-like retroelement pol polyprotein [Arabidopsis thaliana])

HSP 1 Score: 92.8 bits (229), Expect = 6.6e-16
Identity = 48/141 (34.04%), Postives = 85/141 (60.28%), Query Frame = 1


Query: 1   MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVK 60
           M  SKTL +N+DEF+K +S+  +L+ ++ DE +  ++L++LP +Y ++K   KY ++ +K
Sbjct: 97  MQDSKTLEENVDEFQKMISDLNNLQIQVPDEVQAILILSALPDSYDMLKETLKYGREGIK 156

Query: 61  TDAIVSAIRTRELEFQ-LSQKEHHNGDGLFVKGKLQSNQWKNSSNSLSNDEKKAKHKKKC 120
            D ++SA +++ELE +  S      G+GL+V+GK Q+          S+  K  + KK C
Sbjct: 157 LDDVISAAKSKELELRDSSGGSRPVGEGLYVRGKSQARG--------SDGPKSTEGKKVC 216

Query: 121 KYCKKKGHLIQDCFFLKKKNQ 141
             C K+GH  + C+   +KN+
Sbjct: 217 WICGKEGHFKRQCYKWLEKNK 229

[Close]

BLAST of MELO3C010404 vs. NCBI nr
Match: gi|147778736|emb|CAN71583.1| (hypothetical protein VITISV_043292 [Vitis vinifera])

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15
Identity = 47/130 (36.15%), Postives = 79/130 (60.77%), Query Frame = 1


Query: 1   MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVK 60
           M   K++ + IDEF K V + +SL  K+ DE++  +LLNSLPK +  ++   KY+KDS+ 
Sbjct: 56  MHEKKSIDEIIDEFTKLVVDLESLCVKIEDEDQAVLLLNSLPKVFDQLRDTLKYSKDSLS 115

Query: 61  TDAIVSAIRTRELEFQLSQKEHHNGDGLFVKG---KLQSNQWKNSSNSLSNDEKKAKHKK 120
            + +VSAI  ++++ ++ +    + +GL V+G   K  +NQ  N   S S  + K+K  +
Sbjct: 116 LEGVVSAIHAKKMDIRVERIGTTSSEGLVVRGRPKKRNNNQKGNHDKSKSKSKSKSKFTR 175

Query: 121 KCKYCKKKGH 128
           KC +C K+GH
Sbjct: 176 KCFHCHKEGH 185

[Close]

BLAST of MELO3C010404 vs. NCBI nr
Match: gi|90657665|gb|ABD96963.1| (hypothetical protein [Tarenaya spinosa])

HSP 1 Score: 89.7 bits (221), Expect = 5.6e-15
Identity = 52/150 (34.67%), Postives = 87/150 (58.00%), Query Frame = 1


Query: 1   MDPSKTLTDNIDEFKKTVSEFKSLEDKLSDENEVYVLLNSLPKAYKVVKIAPKYAKDSVK 60
           MD S+T+ +N+D F+K +S+  SL  K+ +E +   LLNSLP AY+ ++   KY++ ++ 
Sbjct: 151 MDSSRTIEENLDIFQKLLSDLHSLNVKVEEEYQAVYLLNSLPPAYEQLREVLKYSRATIS 210

Query: 61  TDAIVSAIRTRELEFQLSQ--KEHHNGDGLFVKGKLQSNQWKNSSNSLSNDEKKAKHKKK 120
            + + +A R +ELE  L+Q       G+GL VKGK + +            +KKAK + +
Sbjct: 211 VEEVKAAARMKELEL-LAQGTLTRGTGEGLVVKGKPEKS---------GGGKKKAKDQVE 270

Query: 121 CKYCKKKGHLIQDCFFLKKKNQEKEKDSKG 149
           C YC KKGH  ++C   + +  ++E + KG
Sbjct: 271 CWYCGKKGHYKKEC---RSRRAKEETEGKG 287

The following BLAST results are available for this feature:

BLAST of MELO3C010404 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	4.3e-07	23.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	1.3e-06	26.97	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]

BLAST of MELO3C010404 vs. TrEMBL


Match Name	E-value	Identity	Description
Q9SJU6_ARATH	2.1e-16	34.44	Putative retroelement pol polyprotein OS=Arabidopsis thaliana GN=At2g21310 PE=4 ...	[more]
O82196_ARATH	4.6e-16	34.04	Copia-like retroelement pol polyprotein OS=Arabidopsis thaliana GN=At2g19840 PE=...	[more]
A5ARG5_VITVI	1.3e-15	36.15	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043292 PE=4 SV=1	[more]
Q1KUM3_9ROSI	3.9e-15	34.67	Putative uncharacterized protein OS=Tarenaya spinosa PE=4 SV=1	[more]
A0A151STM6_CAJCA	1.1e-14	32.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of MELO3C010404 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|747053728\|ref\|XP_011073037.1\|	7.8e-17	26.63	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Sesamum ...	[more]
gi\|4567266\|gb\|AAD23679.1\|	3.0e-16	34.44	putative retroelement pol polyprotein [Arabidopsis thaliana]	[more]
gi\|3687234\|gb\|AAC62132.1\|	6.6e-16	34.04	copia-like retroelement pol polyprotein [Arabidopsis thaliana]	[more]
gi\|147778736\|emb\|CAN71583.1\|	1.9e-15	36.15	hypothetical protein VITISV_043292 [Vitis vinifera]	[more]
gi\|90657665\|gb\|ABD96963.1\|	5.6e-15	34.67	hypothetical protein [Tarenaya spinosa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010404T1	MELO3C010404T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 113..132 score: 9.
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 99..136 score: 6.
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..73 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010404	Cucumber (Gy14) v2	cgybmeB253
MELO3C010404	Silver-seed gourd	carmeB0333
MELO3C010404	Cucumber (Chinese Long) v3	cucmeB298
MELO3C010404	Wax gourd	mewgoB593
MELO3C010404	Cucurbita maxima (Rimu)	cmameB246
MELO3C010404	Cucurbita moschata (Rifu)	cmomeB234
MELO3C010404	Wild cucumber (PI 183967)	cpimeB292
MELO3C010404	Cucumber (Chinese Long) v2	cumeB298
MELO3C010404	Watermelon (Charleston Gray)	mewcgB491
MELO3C010404	Watermelon (97103) v1	mewmB520
MELO3C010404	Cucurbita pepo (Zucchini)	cpemeB590