MELO3C010401 (gene) Melon (DHL92) v3.5.1

NameMELO3C010401
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGlycine cleavage system H protein
Locationchr7 : 10258988 .. 10259226 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTATGGGGAATTTACTAAGGATATGAGCACATTCGCACCGACACCAATTCAAAATGCTCTAGTTGCACTACCATTCTTACTACAAATGGTTGAACATATGGGGTCAACAATTCAAATCACCACACCATATGACGTATTTGGGGTCCGAAGAAAATGTTGCATAATGATAGAGTCGTTGAAGGATTTCACATCTATGCGACCAATAGCTACCGCTTGCCTTGATGCGTACATAAT

mRNA sequence

ATGGACTATGGGGAATTTACTAAGGATATGAGCACATTCGCACCGACACCAATTCAAAATGCTCTAGTTGCACTACCATTCTTACTACAAATGGTTGAACATATGGGGTCAACAATTCAAATCACCACACCATATGACGTATTTGGGGTCCGAAGAAAATGTTGCATAATGATAGAGTCGTTGAAGGATTTCACATCTATGCGACCAATAGCTACCGCTTGCCTTGATGCGTACATAAT

Coding sequence (CDS)

ATGGACTATGGGGAATTTACTAAGGATATGAGCACATTCGCACCGACACCAATTCAAAATGCTCTAGTTGCACTACCATTCTTACTACAAATGGTTGAACATATGGGGTCAACAATTCAAATCACCACACCATATGACGTATTTGGGGTCCGAAGAAAATGTTGCATAATGATAGAGTCGTTGAAGGATTTCACATCTATGCGACCAATAGCTACCGCTTGCCTTGATGCGTACATAAT

Protein sequence

MDYGEFTKDMSTFAPTPIQNALVALPFLLQMVEHMGSTIQITTPYDVFGVRRKCCIMIESLKDFTSMRPIATACLDAYI
BLAST of MELO3C010401 vs. NCBI nr
Match: gi|659069187|ref|XP_008448556.1| (PREDICTED: uncharacterized protein LOC103490696 [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-29
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 1

Query: 1  MDYGEFTKDMSTFAPTPIQNALVALPFLLQMVEHMGSTIQITTPYDVFGVRRKCCIMIES 60
          MDYGEFTKDM+TFAPTPIQNA V L FLL+MV+HM   IQITTPYDVFG++RKCCIMIES
Sbjct: 1  MDYGEFTKDMTTFAPTPIQNAPVTLRFLLRMVKHMRPAIQITTPYDVFGIQRKCCIMIES 60

Query: 61 LKDFTSMRPIATACLDAYI 80
          LKDF+SMRPIA ACL AYI
Sbjct: 61 LKDFSSMRPIAIACLGAYI 79

BLAST of MELO3C010401 vs. NCBI nr
Match: gi|778714054|ref|XP_011657178.1| (PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 4.0e-18
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 1

Query: 6   FTKDMSTFAPTPIQNALVALPFLLQMVEHMGSTIQITTPYDVFGVRRKCCIMIESLKDFT 65
           F  D STF+      ALVAL  L+++VEHMGS+IQ+ TP ++FGV+RKCCIM+ESL+DF+
Sbjct: 78  FNTDPSTFSMAAYLRALVALRCLVRLVEHMGSSIQLNTPLELFGVKRKCCIMVESLRDFS 137

Query: 66  SMRPIATACLDAYI 80
           SM+PI T+CLDAY+
Sbjct: 138 SMQPICTSCLDAYM 151

BLAST of MELO3C010401 vs. NCBI nr
Match: gi|778714056|ref|XP_011657179.1| (PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 4.0e-18
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 1

Query: 6   FTKDMSTFAPTPIQNALVALPFLLQMVEHMGSTIQITTPYDVFGVRRKCCIMIESLKDFT 65
           F  D STF+      ALVAL  L+++VEHMGS+IQ+ TP ++FGV+RKCCIM+ESL+DF+
Sbjct: 77  FNTDPSTFSMAAYLRALVALRCLVRLVEHMGSSIQLNTPLELFGVKRKCCIMVESLRDFS 136

Query: 66  SMRPIATACLDAYI 80
           SM+PI T+CLDAY+
Sbjct: 137 SMQPICTSCLDAYM 150

BLAST of MELO3C010401 vs. NCBI nr
Match: gi|659105267|ref|XP_008453054.1| (PREDICTED: uncharacterized protein LOC103493876 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 7.0e-07
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1

Query: 19 QNALVALPFLLQMVEHMGSTIQITTPYDVFGVRRKCCIMIESLKDFTSMRPIATACLDAY 78
          + A V L  LL  ++++GS IQI  P  VF   RKCCI +E+L++F  M+PI+T C+DA+
Sbjct: 28 KRAPVTLRLLLWELDYIGSKIQIHVPAKVFRYERKCCIFLEALQEFCQMQPISTQCIDAF 87

Query: 79 I 80
          +
Sbjct: 88 M 88

BLAST of MELO3C010401 vs. NCBI nr
Match: gi|659134106|ref|XP_008467031.1| (PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1

Query: 19  QNALVALPFLLQMVEHMGSTIQITTPYDVFGVRRKCCIMIESLKDFTSMRPIATACLDAY 78
           + A V L  LL  + ++GS I+I  P  VFG  RKCCI +E+L++F  M+PI+T C+D +
Sbjct: 247 KRAPVTLRLLLWELNYIGSKIRIHVPAKVFGYERKCCIFLEALQEFCQMQPISTQCIDVF 306

Query: 79  I 80
           +
Sbjct: 307 M 307

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659069187|ref|XP_008448556.1|2.2e-2982.28PREDICTED: uncharacterized protein LOC103490696 [Cucumis melo][more]
gi|778714054|ref|XP_011657178.1|4.0e-1860.81PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus][more]
gi|778714056|ref|XP_011657179.1|4.0e-1860.81PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus][more]
gi|659105267|ref|XP_008453054.1|7.0e-0745.90PREDICTED: uncharacterized protein LOC103493876 [Cucumis melo][more]
gi|659134106|ref|XP_008467031.1|1.2e-0644.26PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010401T1MELO3C010401T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None