MELO3C010396 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010396
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	tRNA modification GTPase MnmE
Location	chr7 : 10362221 .. 10362697 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAGCACGACGTTCCCCATCCCGGAAGACGACGACAACACGGAGAAGGCTAAAGAGCTTCTTGCTAAGTTAGAGGAGGGATTGGAGGAGGTGCAGACTAAAGTCGGCAAGATGAGCGGGTTCATGGAAGAGCTAATCCAAGATAACATGGAGATCTCGAAAGTCACCAAGGAAATGATCAAAGGCCTTGGAGGCTCGTACGGTAAGGAGATGTATGATCTTCTTGTTGAGGTAACTAACTTGCGAAAGTTCGTGAAAGAGGAACTTCACGTCTTACGAAAGGACGTCGATGAGGTACGTGCCGAATGTCAATCTAGACATACTAGTAACGGTAATGCATCCACTAGTACATCATGCACCATGGTAGGCACCTACAGTATCGAAGTGCCAAAAATCAACATGTTTAGTGGCACGAGGAATGCCATGATGTGGAGAATTTCCTATTTGGCCTTGAGCAGTATTATGAGGCCTTAG

mRNA sequence

ATGTGTAGCACGACGTTCCCCATCCCGGAAGACGACGACAACACGGAGAAGGCTAAAGAGCTTCTTGCTAAGTTAGAGGAGGGATTGGAGGAGGTGCAGACTAAAGTCGGCAAGATGAGCGGGTTCATGGAAGAGCTAATCCAAGATAACATGGAGATCTCGAAAGTCACCAAGGAAATGATCAAAGGCCTTGGAGGCTCGTACGGTAAGGAGATGTATGATCTTCTTGTTGAGGTAACTAACTTGCGAAAGTTCGTGAAAGAGGAACTTCACGTCTTACGAAAGGACGTCGATGAGGTACGTGCCGAATGTCAATCTAGACATACTAGTAACGGTAATGCATCCACTAGTACATCATGCACCATGGTAGGCACCTACAGTATCGAAGTGCCAAAAATCAACATGTTTAGTGGCACGAGGAATGCCATGATGTGGAGAATTTCCTATTTGGCCTTGAGCAGTATTATGAGGCCTTAG

Coding sequence (CDS)

ATGTGTAGCACGACGTTCCCCATCCCGGAAGACGACGACAACACGGAGAAGGCTAAAGAGCTTCTTGCTAAGTTAGAGGAGGGATTGGAGGAGGTGCAGACTAAAGTCGGCAAGATGAGCGGGTTCATGGAAGAGCTAATCCAAGATAACATGGAGATCTCGAAAGTCACCAAGGAAATGATCAAAGGCCTTGGAGGCTCGTACGGTAAGGAGATGTATGATCTTCTTGTTGAGGTAACTAACTTGCGAAAGTTCGTGAAAGAGGAACTTCACGTCTTACGAAAGGACGTCGATGAGGTACGTGCCGAATGTCAATCTAGACATACTAGTAACGGTAATGCATCCACTAGTACATCATGCACCATGGTAGGCACCTACAGTATCGAAGTGCCAAAAATCAACATGTTTAGTGGCACGAGGAATGCCATGATGTGGAGAATTTCCTATTTGGCCTTGAGCAGTATTATGAGGCCTTAG

Protein sequence

MCSTTFPIPEDDDNTEKAKELLAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSGTRNAMMWRISYLALSSIMRP*

Homology

[Close]

BLAST of MELO3C010396 vs. TrEMBL
Match: A0A067JKJ0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26608 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08
Identity = 34/99 (34.34%), Postives = 58/99 (58.59%), Query Frame = 1


Query: 25  LEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRK 84
           LE+ +   +  VG++S  ++ ++Q+N EI++  K+MI  LG +  +E+  L  EVT +R 
Sbjct: 8   LEQSMNSQEAFVGELSEQLDNVVQENEEITRAAKDMILELGVALRQELQALANEVTEVRG 67

Query: 85  FVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMV 124
            +  E+  LRK+VD +R+EC      +  ASTS +   V
Sbjct: 68  IINSEVSALRKEVDALRSECWMHQRMSSPASTSATTNPV 106

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BLAST of MELO3C010396 vs. NCBI nr
Match: gi|659083321|ref|XP_008442289.1| (PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 3.0e-17
Identity = 55/137 (40.15%), Postives = 83/137 (60.58%), Query Frame = 1


Query: 16  EKAKELLAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDL 75
           E     L  LE+G+E+VQ  VG++S   EEL+Q+N EI+ V KEMI+ +G ++ KE+ +L
Sbjct: 42  EHVNTRLTNLEQGMEDVQLAVGRLSDNFEELVQENAEITSVAKEMIEDMGRTFQKELKEL 101

Query: 76  LVEVTNLRKFVKEELH-------VLRKDVDEVRAECQSRHTSNGNASTSTSCTMVGTYSI 135
              VT L+ FV+ ELH        L   +D +  EC+S+H  +   STST  T  GT +I
Sbjct: 102 ASTVTTLKAFVEGELHDLYTKSISLETRLDALCVECRSKHLGSNAPSTSTHPTTSGTSNI 161

Query: 136 EVPKINMFSGTRNAMMW 146
           +VPK ++ +G  +A +W
Sbjct: 162 KVPKPDIDNGD-SAQLW 177

[Close]

BLAST of MELO3C010396 vs. NCBI nr
Match: gi|659068885|ref|XP_008446938.1| (PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 5.2e-17
Identity = 52/128 (40.62%), Postives = 80/128 (62.50%), Query Frame = 1


Query: 22  LAKLEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTN 81
           L  LE+G+E+VQ  VG++S   EEL+ +N EI+ V KEMI+ +G ++ KE+ +L   VT 
Sbjct: 48  LTNLEQGMEDVQLAVGRLSENFEELVLENAEITSVAKEMIEDMGRTFQKELKELASTVTT 107

Query: 82  LRKFVKEELHVLRKD-------VDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKIN 141
           L+ FV+ ELH L          +D +  EC+S+H  +   S ST  T  GT +I+VPK +
Sbjct: 108 LKAFVEGELHNLHTKSISFETRLDALCVECRSKHLGSNAPSMSTHPTTSGTSNIKVPKPD 167

Query: 142 MFSGTRNA 143
           +++G RN+
Sbjct: 168 VYNGVRNS 175

[Close]

BLAST of MELO3C010396 vs. NCBI nr
Match: gi|659121350|ref|XP_008460615.1| (PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 5.7e-16
Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 1


Query: 29  LEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRKFVKE 88
           +E+VQ  VG++S   EEL+Q+N EI+ V KEMI+ +G ++ +E+ +L   VT L+ FV+ 
Sbjct: 1   MEDVQLAVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELASTVTTLKAFVEG 60

Query: 89  ELHVLRKD-------VDEVRAECQSRHTSNGNASTSTSCTMVGTYSIEVPKINMFSGTRN 143
           ELH L          +D +  EC+S+H  +   STST  T  GT +I+VPK ++++G RN
Sbjct: 61  ELHNLHTKSISFETRLDALCVECRSKHLGSNAPSTSTHPTTSGTSNIKVPKPDVYNGVRN 120

[Close]

BLAST of MELO3C010396 vs. NCBI nr
Match: gi|643710121|gb|KDP24402.1| (hypothetical protein JCGZ_26608 [Jatropha curcas])

HSP 1 Score: 66.2 bits (160), Expect = 5.7e-08
Identity = 34/99 (34.34%), Postives = 58/99 (58.59%), Query Frame = 1


Query: 25  LEEGLEEVQTKVGKMSGFMEELIQDNMEISKVTKEMIKGLGGSYGKEMYDLLVEVTNLRK 84
           LE+ +   +  VG++S  ++ ++Q+N EI++  K+MI  LG +  +E+  L  EVT +R 
Sbjct: 8   LEQSMNSQEAFVGELSEQLDNVVQENEEITRAAKDMILELGVALRQELQALANEVTEVRG 67

Query: 85  FVKEELHVLRKDVDEVRAECQSRHTSNGNASTSTSCTMV 124
            +  E+  LRK+VD +R+EC      +  ASTS +   V
Sbjct: 68  IINSEVSALRKEVDALRSECWMHQRMSSPASTSATTNPV 106

The following BLAST results are available for this feature:

BLAST of MELO3C010396 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067JKJ0_JATCU	4.0e-08	34.34	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26608 PE=4 SV=1	[more]

BLAST of MELO3C010396 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083321\|ref\|XP_008442289.1\|	3.0e-17	40.15	PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo]	[more]
gi\|659068885\|ref\|XP_008446938.1\|	5.2e-17	40.63	PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo]	[more]
gi\|659121350\|ref\|XP_008460615.1\|	5.7e-16	41.32	PREDICTED: uncharacterized protein LOC103499392 [Cucumis melo]	[more]
gi\|643710121\|gb\|KDP24402.1\|	5.7e-08	34.34	hypothetical protein JCGZ_26608 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010396T1	MELO3C010396T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 83..103 score: -coord: 15..35 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010396	Cucurbita maxima (Rimu)	cmameB246
MELO3C010396	Cucurbita maxima (Rimu)	cmameB435
MELO3C010396	Cucurbita moschata (Rifu)	cmomeB234
MELO3C010396	Cucurbita moschata (Rifu)	cmomeB426
MELO3C010396	Cucurbita pepo (Zucchini)	cpemeB541
MELO3C010396	Cucurbita pepo (Zucchini)	cpemeB590
MELO3C010396	Bottle gourd (USVL1VR-Ls)	lsimeB448
MELO3C010396	Silver-seed gourd	carmeB0333
MELO3C010396	Silver-seed gourd	carmeB0759