MELO3C010378 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010378
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA ligase
Location	chr7 : 10836738 .. 10837046 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAATTTTTTTCTGGGGATAAGATTTTGTGTAAAAAGCCAGTTTATTATCGAACTGCTGAAGTTCCTGATATGTGGTTCTTGCCACAAGTTGTTTGGGAAATTAGAGGTGCAGACTTAACAGTATCGCCAGTTCACCAGGCTGCTGTAGGTTTAGTTCATCCTGTTCGTGGCATCTCAATCAGGTTTCCAAGATTTATTCGTTCGGTTCCGGATAGAAATCCTGAAGAATGTAGCACGGCTACAGATATAGCGGAAATGTTTAATTCTCAAACGAGGAAAATGGATGTTGCATCAGGAGGTTGA

mRNA sequence

ATGAAAGAATTTTTTTCTGGGGATAAGATTTTGTGTAAAAAGCCAGTTTATTATCGAACTGCTGAAGTTCCTGATATGTGGTTCTTGCCACAAGTTGTTTGGGAAATTAGAGGTGCAGACTTAACAGTATCGCCAGTTCACCAGGCTGCTGTAGGTTTAGTTCATCCTGTTCGTGGCATCTCAATCAGGTTTCCAAGATTTATTCGTTCGGTTCCGGATAGAAATCCTGAAGAATGTAGCACGGCTACAGATATAGCGGAAATGTTTAATTCTCAAACGAGGAAAATGGATGTTGCATCAGGAGGTTGA

Coding sequence (CDS)

ATGAAAGAATTTTTTTCTGGGGATAAGATTTTGTGTAAAAAGCCAGTTTATTATCGAACTGCTGAAGTTCCTGATATGTGGTTCTTGCCACAAGTTGTTTGGGAAATTAGAGGTGCAGACTTAACAGTATCGCCAGTTCACCAGGCTGCTGTAGGTTTAGTTCATCCTGTTCGTGGCATCTCAATCAGGTTTCCAAGATTTATTCGTTCGGTTCCGGATAGAAATCCTGAAGAATGTAGCACGGCTACAGATATAGCGGAAATGTTTAATTCTCAAACGAGGAAAATGGATGTTGCATCAGGAGGTTGA

Protein sequence

MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASGG*

Homology

[Close]

BLAST of MELO3C010378 vs. Swiss-Prot
Match: LIG6_ARATH (DNA ligase 6 OS=Arabidopsis thaliana GN=LIG6 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-40
Identity = 77/100 (77.00%), Postives = 84/100 (84.00%), Query Frame = 1


Query: 1    MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60
            MKEF+S DKIL KKP YYRT E PDMWF  +VVWEIRGAD TVSPVH A++GLVHP RGI
Sbjct: 1295 MKEFYSEDKILAKKPPYYRTGETPDMWFSAEVVWEIRGADFTVSPVHSASLGLVHPSRGI 1354

Query: 61   SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS 101
            S+RFPRFI  V DRNPEECSTATDIAEMF++QTRKM++ S
Sbjct: 1355 SVRFPRFISKVTDRNPEECSTATDIAEMFHAQTRKMNITS 1394

[Close]

BLAST of MELO3C010378 vs. Swiss-Prot
Match: DNLI1_ARATH (DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-17
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 9   KILCKKPVYYRTAEV--PDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPR 68
           +++     YYR  +   PD+WF P  VWE++ ADLT+SPVH+AA G+V P +GIS+RFPR
Sbjct: 691 QVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRFPR 750

Query: 69  FIRSVPDRNPEECSTATDIAEMFNSQ 93
            +R   D+ PEE +++  IA+++ +Q
Sbjct: 751 LLRVREDKKPEEATSSEQIADLYQAQ 776

[Close]

BLAST of MELO3C010378 vs. Swiss-Prot
Match: DNLI1_XENLA (DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.5e-17
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 1


Query: 5    FSGDKILCKKPVYYR--TAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISI 64
            F  D ++     YYR  +A  PD WF P  VWE++ ADL++SPVH+AA+GLV   +GIS+
Sbjct: 964  FLKDHVIENPRSYYRWDSATEPDHWFDPVQVWEVKCADLSISPVHKAALGLVEDQKGISL 1023

Query: 65   RFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS 101
            RFPRF+R   D+ PEE + +  +A+++  Q +  + +S
Sbjct: 1024 RFPRFLRIRDDKKPEESTNSFQVADLYRKQQQIQNTSS 1061

[Close]

BLAST of MELO3C010378 vs. Swiss-Prot
Match: DNLI_PICTO (DNA ligase OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=lig PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-16
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 7   GDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPR 66
           GDKI+ KKP    ++  PD W  P +V EIRGA++TVSPVH  A+ ++    G+++RFPR
Sbjct: 493 GDKIVEKKPARVNSSMEPDHWIYPSLVLEIRGAEITVSPVHTCAMNIIEKGSGLALRFPR 552

Query: 67  FIRSVPDRNPEECSTATDIAEMFNSQTRKMD 98
            I+   D+ PE+ +T  +I EM+ +Q + ++
Sbjct: 553 LIKPRDDKKPEDATTTNEIIEMYKAQKKVIE 583

[Close]

BLAST of MELO3C010378 vs. Swiss-Prot
Match: DNLI1_DICDI (DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-16
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 1


Query: 24   PDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPRFIRSVPDRNPEECSTAT 83
            PD+WF P  VWE+  ADL++SPVH AA G++ P +GI++RFPRFIR  PD++PE+ +++ 
Sbjct: 1108 PDVWFSPSCVWEVLAADLSISPVHTAASGILDPNKGIALRFPRFIRIRPDKSPEDATSSD 1167

Query: 84   DIAEMFNSQ 93
             + +M+ +Q
Sbjct: 1168 QVVDMYQNQ 1176

[Close]

BLAST of MELO3C010378 vs. TrEMBL
Match: V4T333_9ROSI (DNA ligase OS=Citrus clementina GN=CICLE_v10010910mg PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 7.2e-43
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 1


Query: 1    MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60
            MKEFFSGDKIL KKP YYRTAEVPDMWF P+VVWEIRGAD T+SPVHQAA+GLVHP RGI
Sbjct: 1301 MKEFFSGDKILLKKPSYYRTAEVPDMWFSPEVVWEIRGADFTISPVHQAAIGLVHPSRGI 1360

Query: 61   SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS 101
            SIRFPRFIR V DRNP+ECSTA DIAEMF+SQTRKMDV +
Sbjct: 1361 SIRFPRFIRLVSDRNPDECSTAADIAEMFHSQTRKMDVTA 1400

[Close]

BLAST of MELO3C010378 vs. TrEMBL
Match: A0A0D2SFT5_GOSRA (DNA ligase OS=Gossypium raimondii GN=B456_007G185500 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-42
Identity = 82/100 (82.00%), Postives = 91/100 (91.00%), Query Frame = 1


Query: 1    MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60
            MKEFFSGD+IL KKP YY+TAEVPDMWF P+++WEIRGAD TVSPVHQAA+GLVHP RGI
Sbjct: 1305 MKEFFSGDRILAKKPAYYQTAEVPDMWFFPELIWEIRGADFTVSPVHQAAIGLVHPSRGI 1364

Query: 61   SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS 101
            SIRFPRFIR V DRNPEECSTA D+AEMF+SQTRKMDV +
Sbjct: 1365 SIRFPRFIRPVTDRNPEECSTAADVAEMFHSQTRKMDVTA 1404

[Close]

BLAST of MELO3C010378 vs. TrEMBL
Match: A0A059BUJ7_EUCGR (DNA ligase OS=Eucalyptus grandis GN=EUGRSUZ_F02800 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.6e-42
Identity = 84/100 (84.00%), Postives = 92/100 (92.00%), Query Frame = 1


Query: 1    MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60
            MKEFFSGDKIL KKP YY+TAEVPDMWF P+VVWEIRGADLT+SPVHQAAVGLVHP RGI
Sbjct: 1284 MKEFFSGDKILSKKPPYYKTAEVPDMWFSPEVVWEIRGADLTLSPVHQAAVGLVHPSRGI 1343

Query: 61   SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS 101
            S+RFPRFIR V DRNPE+CSTA DIAEMF SQ+RKMD++S
Sbjct: 1344 SMRFPRFIRCVSDRNPEDCSTAADIAEMFQSQSRKMDMSS 1383

[Close]

BLAST of MELO3C010378 vs. TrEMBL
Match: A0A0B0NW93_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_21615 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 6.1e-42
Identity = 81/100 (81.00%), Postives = 91/100 (91.00%), Query Frame = 1


Query: 1    MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60
            MKEF+SGD+IL KKP YY+TAEVPDMWF P+++WEIRGAD TVSPVHQAA+GLVHP RGI
Sbjct: 1220 MKEFYSGDRILAKKPAYYQTAEVPDMWFSPELIWEIRGADFTVSPVHQAAIGLVHPSRGI 1279

Query: 61   SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS 101
            SIRFPRFIR V DRNPEECSTA D+AEMF+SQTRKMDV +
Sbjct: 1280 SIRFPRFIRLVTDRNPEECSTAADVAEMFHSQTRKMDVTA 1319

[Close]

BLAST of MELO3C010378 vs. TrEMBL
Match: B9H345_POPTR (DNA ligase OS=Populus trichocarpa GN=POPTR_0004s09310g PE=3 SV=2)

HSP 1 Score: 177.6 bits (449), Expect = 8.0e-42
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 1


Query: 1    MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60
            MKEFFSGD+IL KKP YYRT E PDMWF P+VVWEIRGAD T+SPVHQAAVGLVH  RGI
Sbjct: 1287 MKEFFSGDRILAKKPPYYRTVEAPDMWFSPEVVWEIRGADFTISPVHQAAVGLVHQSRGI 1346

Query: 61   SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS 101
            SIRFPRFI S+ DRNPEECSTA DIAEMFNSQTRKMDV +
Sbjct: 1347 SIRFPRFIHSISDRNPEECSTAADIAEMFNSQTRKMDVTA 1386

[Close]

BLAST of MELO3C010378 vs. TAIR10
Match: AT1G66730.1 (AT1G66730.1 DNA LIGASE 6)

HSP 1 Score: 166.4 bits (420), Expect = 9.3e-42
Identity = 77/100 (77.00%), Postives = 84/100 (84.00%), Query Frame = 1


Query: 1    MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60
            MKEF+S DKIL KKP YYRT E PDMWF  +VVWEIRGAD TVSPVH A++GLVHP RGI
Sbjct: 1295 MKEFYSEDKILAKKPPYYRTGETPDMWFSAEVVWEIRGADFTVSPVHSASLGLVHPSRGI 1354

Query: 61   SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS 101
            S+RFPRFI  V DRNPEECSTATDIAEMF++QTRKM++ S
Sbjct: 1355 SVRFPRFISKVTDRNPEECSTATDIAEMFHAQTRKMNITS 1394

[Close]

BLAST of MELO3C010378 vs. TAIR10
Match: AT1G08130.1 (AT1G08130.1 DNA ligase 1)

HSP 1 Score: 90.5 bits (223), Expect = 6.5e-19
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 9   KILCKKPVYYRTAEV--PDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPR 68
           +++     YYR  +   PD+WF P  VWE++ ADLT+SPVH+AA G+V P +GIS+RFPR
Sbjct: 691 QVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRFPR 750

Query: 69  FIRSVPDRNPEECSTATDIAEMFNSQ 93
            +R   D+ PEE +++  IA+++ +Q
Sbjct: 751 LLRVREDKKPEEATSSEQIADLYQAQ 776

[Close]

BLAST of MELO3C010378 vs. TAIR10
Match: AT1G49250.1 (AT1G49250.1 ATP-dependent DNA ligase)

HSP 1 Score: 90.1 bits (222), Expect = 8.5e-19
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1


Query: 9   KILCKKPVYYRTAEV--PDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGISIRFPR 68
           K++     YY+      PD+W  P  VWE++ ADLTVSPV++ A+G+V P +GIS+RFPR
Sbjct: 558 KVIATPKQYYQVDNDLNPDVWLEPTEVWEVKAADLTVSPVYREAIGIVDPDKGISLRFPR 617

Query: 69  FIRSVPDRNPEECSTATDIAEMFNSQ 93
            +R   D+NPEE +T+  IAEM+ +Q
Sbjct: 618 LVRIRKDKNPEEATTSDQIAEMYQAQ 643

[Close]

BLAST of MELO3C010378 vs. NCBI nr
Match: gi|659086673|ref|XP_008444062.1| (PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 2.5e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1    MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60
            MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI
Sbjct: 1303 MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 1362

Query: 61   SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASGG 103
            SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASGG
Sbjct: 1363 SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASGG 1404

[Close]

BLAST of MELO3C010378 vs. NCBI nr
Match: gi|659086671|ref|XP_008444061.1| (PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 2.5e-52
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1    MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60
            MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI
Sbjct: 1304 MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 1363

Query: 61   SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASGG 103
            SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASGG
Sbjct: 1364 SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVASGG 1405

[Close]

BLAST of MELO3C010378 vs. NCBI nr
Match: gi|568857253|ref|XP_006482181.1| (PREDICTED: DNA ligase 1 isoform X1 [Citrus sinensis])

HSP 1 Score: 181.0 bits (458), Expect = 1.0e-42
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 1


Query: 1    MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60
            MKEFFSGDKIL KKP YYRTAEVPDMWF P+VVWEIRGAD T+SPVHQAA+GLVHP RGI
Sbjct: 1301 MKEFFSGDKILLKKPSYYRTAEVPDMWFSPEVVWEIRGADFTISPVHQAAIGLVHPSRGI 1360

Query: 61   SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS 101
            SIRFPRFIR V DRNP+ECSTA DIAEMF+SQTRKMDV +
Sbjct: 1361 SIRFPRFIRLVSDRNPDECSTAADIAEMFHSQTRKMDVTA 1400

[Close]

BLAST of MELO3C010378 vs. NCBI nr
Match: gi|567876203|ref|XP_006430691.1| (hypothetical protein CICLE_v10010910mg [Citrus clementina])

HSP 1 Score: 181.0 bits (458), Expect = 1.0e-42
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 1


Query: 1    MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60
            MKEFFSGDKIL KKP YYRTAEVPDMWF P+VVWEIRGAD T+SPVHQAA+GLVHP RGI
Sbjct: 1301 MKEFFSGDKILLKKPSYYRTAEVPDMWFSPEVVWEIRGADFTISPVHQAAIGLVHPSRGI 1360

Query: 61   SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS 101
            SIRFPRFIR V DRNP+ECSTA DIAEMF+SQTRKMDV +
Sbjct: 1361 SIRFPRFIRLVSDRNPDECSTAADIAEMFHSQTRKMDVTA 1400

[Close]

BLAST of MELO3C010378 vs. NCBI nr
Match: gi|823191077|ref|XP_012491347.1| (PREDICTED: DNA ligase 1 isoform X1 [Gossypium raimondii])

HSP 1 Score: 180.3 bits (456), Expect = 1.8e-42
Identity = 82/100 (82.00%), Postives = 91/100 (91.00%), Query Frame = 1


Query: 1    MKEFFSGDKILCKKPVYYRTAEVPDMWFLPQVVWEIRGADLTVSPVHQAAVGLVHPVRGI 60
            MKEFFSGD+IL KKP YY+TAEVPDMWF P+++WEIRGAD TVSPVHQAA+GLVHP RGI
Sbjct: 1305 MKEFFSGDRILAKKPAYYQTAEVPDMWFFPELIWEIRGADFTVSPVHQAAIGLVHPSRGI 1364

Query: 61   SIRFPRFIRSVPDRNPEECSTATDIAEMFNSQTRKMDVAS 101
            SIRFPRFIR V DRNPEECSTA D+AEMF+SQTRKMDV +
Sbjct: 1365 SIRFPRFIRPVTDRNPEECSTAADVAEMFHSQTRKMDVTA 1404

The following BLAST results are available for this feature:

BLAST of MELO3C010378 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LIG6_ARATH	1.7e-40	77.00	DNA ligase 6 OS=Arabidopsis thaliana GN=LIG6 PE=2 SV=1	[more]
DNLI1_ARATH	1.2e-17	45.35	DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2	[more]
DNLI1_XENLA	7.5e-17	42.86	DNA ligase 1 OS=Xenopus laevis GN=lig1 PE=2 SV=1	[more]
DNLI_PICTO	1.3e-16	41.76	DNA ligase OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / ...	[more]
DNLI1_DICDI	1.7e-16	49.28	DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1	[more]

BLAST of MELO3C010378 vs. TrEMBL


Match Name	E-value	Identity	Description
V4T333_9ROSI	7.2e-43	85.00	DNA ligase OS=Citrus clementina GN=CICLE_v10010910mg PE=3 SV=1	[more]
A0A0D2SFT5_GOSRA	1.2e-42	82.00	DNA ligase OS=Gossypium raimondii GN=B456_007G185500 PE=3 SV=1	[more]
A0A059BUJ7_EUCGR	3.6e-42	84.00	DNA ligase OS=Eucalyptus grandis GN=EUGRSUZ_F02800 PE=3 SV=1	[more]
A0A0B0NW93_GOSAR	6.1e-42	81.00	Uncharacterized protein OS=Gossypium arboreum GN=F383_21615 PE=4 SV=1	[more]
B9H345_POPTR	8.0e-42	83.00	DNA ligase OS=Populus trichocarpa GN=POPTR_0004s09310g PE=3 SV=2	[more]

BLAST of MELO3C010378 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66730.1	9.3e-42	77.00	DNA LIGASE 6	[more]
AT1G08130.1	6.5e-19	45.35	DNA ligase 1	[more]
AT1G49250.1	8.5e-19	47.67	ATP-dependent DNA ligase	[more]

BLAST of MELO3C010378 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086673\|ref\|XP_008444062.1\|	2.5e-52	100.00	PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo]	[more]
gi\|659086671\|ref\|XP_008444061.1\|	2.5e-52	100.00	PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo]	[more]
gi\|568857253\|ref\|XP_006482181.1\|	1.0e-42	85.00	PREDICTED: DNA ligase 1 isoform X1 [Citrus sinensis]	[more]
gi\|567876203\|ref\|XP_006430691.1\|	1.0e-42	85.00	hypothetical protein CICLE_v10010910mg [Citrus clementina]	[more]
gi\|823191077\|ref\|XP_012491347.1\|	1.8e-42	82.00	PREDICTED: DNA ligase 1 isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012309	DNA_ligase_ATP-dep_C
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003910	DNA ligase (ATP) activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair
GO:0006310	DNA recombination

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0051103	DNA ligation involved in DNA repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006260	DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0006273	lagging strand elongation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003910	DNA ligase (ATP) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010378T1	MELO3C010378T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012309	DNA ligase, ATP-dependent, C-terminal	PFAM	PF04679	DNA_ligase_A_C	coord: 21..73 score: 3.
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 1..92 score: 7.1
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 13..92 score: 7.88
None	No IPR available	PANTHER	PTHR10459	DNA LIGASE	coord: 1..101 score: 2.3
None	No IPR available	PANTHER	PTHR10459:SF38	DNA LIGASE	coord: 1..101 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010378	Cla010766	Watermelon (97103) v1	mewmB519
MELO3C010378	ClCG07G016460	Watermelon (Charleston Gray)	mewcgB489
MELO3C010378	Cla97C07G143470	Watermelon (97103) v2	mewmbB495
MELO3C010378	Bhi01G001673	Wax gourd	mewgoB584
MELO3C010378	Lsi07G009350	Bottle gourd (USVL1VR-Ls)	lsimeB448
MELO3C010378	CsGy4G009840	Cucumber (Gy14) v2	cgybmeB272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010378	Wild cucumber (PI 183967)	cpimeB313
MELO3C010378	Cucumber (Chinese Long) v2	cumeB316
MELO3C010378	Cucurbita pepo (Zucchini)	cpemeB541
MELO3C010378	Cucurbita pepo (Zucchini)	cpemeB590
MELO3C010378	Silver-seed gourd	carmeB0759
MELO3C010378	Cucumber (Chinese Long) v3	cucmeB318
MELO3C010378	Cucurbita maxima (Rimu)	cmameB246
MELO3C010378	Cucurbita maxima (Rimu)	cmameB435
MELO3C010378	Cucurbita moschata (Rifu)	cmomeB234
MELO3C010378	Cucurbita moschata (Rifu)	cmomeB426