MELO3C010311.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C010311.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionGamma-tubulin complex component
Locationchr02 : 16827399 .. 16827743 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCATTATGGAAGAATGCCTTGTTGTATATCTGAGGCAGCAGGTAGATCTTTGAATCTCTTATGCTGAACTTTAGATTTATAGTGTGTGTGGTTGATATTTAGATGTTATCAATTAAACATAACTGTTGTAGGTGGATTACATTGGAAAACGTGTTTTTTTAAAGTTGATGAATGGGTGGAGATTGATGGATGAGCAGGCAGTCTTACACGCTATTTATTTGCTAGGATCAGGTATTTGTTAAGCATTCTATTGTATGATCCTGATTTAATTTTGCCAGTTTGTTTGCAGACCGTTGGCAATATCTTCATATTTTCAGGGGATCTTCGGCAGCACTTTAACT

mRNA sequence

ATGGTCATTATGGAAGAATGCCTTGTTGTATATCTGAGGCAGCAGGTGGATTACATTGGAAAACGTGTTTTTTTAAAGTTGATGAATGGGTGGAGATTGATGGATGAGCAGGCAGTCTTACACGCTATTTATTTGCTAGGATCAGGGGATCTTCGGCAGCACTTTAACT

Coding sequence (CDS)

ATGGTCATTATGGAAGAATGCCTTGTTGTATATCTGAGGCAGCAGGTGGATTACATTGGAAAACGTGTTTTTTTAAAGTTGATGAATGGGTGGAGATTGATGGATGAGCAGGCAGTCTTACACGCTATTTATTTGCTAGGATCAGGGGATCTTCGGCAGCACTTTAAC

Protein sequence

MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHFN
Homology
[Close]
BLAST of MELO3C010311.2 vs. NCBI nr
Match: XP_022136607.1 (gamma-tubulin complex component 5-like [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-17
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1   MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHF 56
           MVIMEECLVVYLRQQVDYIGKRV  KLMN WRLMDE AVL AIYLLGSGDL QHF
Sbjct: 608 MVIMEECLVVYLRQQVDYIGKRVLSKLMNEWRLMDELAVLRAIYLLGSGDLLQHF 662

[Close]
BLAST of MELO3C010311.2 vs. NCBI nr
Match: XP_022975992.1 (gamma-tubulin complex component 5-like [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-17
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1   MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHF 56
           MVIMEECLVVYLRQQVDYIGKRV  KLMN WRLMDE AVL AIYLLGSGDL QHF
Sbjct: 608 MVIMEECLVVYLRQQVDYIGKRVLSKLMNEWRLMDELAVLRAIYLLGSGDLLQHF 662

[Close]
BLAST of MELO3C010311.2 vs. NCBI nr
Match: XP_008452496.1 (PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-17
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1   MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHF 56
           M+IMEECL+VYLRQQVDYIGKRV  KLMN WRLMDE AVL AIYLLGSGDL QHF
Sbjct: 613 MIIMEECLIVYLRQQVDYIGKRVLSKLMNEWRLMDELAVLRAIYLLGSGDLLQHF 667

[Close]
BLAST of MELO3C010311.2 vs. NCBI nr
Match: XP_008452497.1 (PREDICTED: gamma-tubulin complex component 5-like isoform X2 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-17
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1   MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHF 56
           M+IMEECL+VYLRQQVDYIGKRV  KLMN WRLMDE AVL AIYLLGSGDL QHF
Sbjct: 607 MIIMEECLIVYLRQQVDYIGKRVLSKLMNEWRLMDELAVLRAIYLLGSGDLLQHF 661

[Close]
BLAST of MELO3C010311.2 vs. NCBI nr
Match: XP_008452498.1 (PREDICTED: gamma-tubulin complex component 5-like isoform X3 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.7e-17
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1   MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHF 56
           M+IMEECL+VYLRQQVDYIGKRV  KLMN WRLMDE AVL AIYLLGSGDL QHF
Sbjct: 464 MIIMEECLIVYLRQQVDYIGKRVLSKLMNEWRLMDELAVLRAIYLLGSGDLLQHF 518

[Close]
BLAST of MELO3C010311.2 vs. TAIR10
Match: AT1G80260.1 (Spc97 / Spc98 family of spindle pole body (SBP) component)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-16
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 1   MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHF 56
           +VIM+EC  +Y+R+QVDYIGK +  KLMN W+LM E AVL AIYLLGSGDL QHF
Sbjct: 622 VVIMQECFTIYIRRQVDYIGKVILSKLMNDWKLMHELAVLRAIYLLGSGDLLQHF 676

[Close]
BLAST of MELO3C010311.2 vs. TAIR10
Match: AT1G20570.1 (Spc97 / Spc98 family of spindle pole body (SBP) component)

HSP 1 Score: 74.7 bits (182), Expect = 2.0e-14
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 1   MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHF 56
           +VIM+EC  + +R+QVD I K +F KLMN W+LM E AVL AIYLLGSGDL QHF
Sbjct: 621 VVIMQECFTINIRRQVDNISKVIFSKLMNEWKLMHELAVLRAIYLLGSGDLLQHF 675

[Close]
BLAST of MELO3C010311.2 vs. TrEMBL
Match: tr|A0A1S3BU00|A0A1S3BU00_CUCME (Gamma-tubulin complex component OS=Cucumis melo OX=3656 GN=LOC103493512 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1   MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHF 56
           M+IMEECL+VYLRQQVDYIGKRV  KLMN WRLMDE AVL AIYLLGSGDL QHF
Sbjct: 464 MIIMEECLIVYLRQQVDYIGKRVLSKLMNEWRLMDELAVLRAIYLLGSGDLLQHF 518

[Close]
BLAST of MELO3C010311.2 vs. TrEMBL
Match: tr|A0A1S3BTD0|A0A1S3BTD0_CUCME (Gamma-tubulin complex component OS=Cucumis melo OX=3656 GN=LOC103493512 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1   MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHF 56
           M+IMEECL+VYLRQQVDYIGKRV  KLMN WRLMDE AVL AIYLLGSGDL QHF
Sbjct: 607 MIIMEECLIVYLRQQVDYIGKRVLSKLMNEWRLMDELAVLRAIYLLGSGDLLQHF 661

[Close]
BLAST of MELO3C010311.2 vs. TrEMBL
Match: tr|A0A1S3BV48|A0A1S3BV48_CUCME (Gamma-tubulin complex component OS=Cucumis melo OX=3656 GN=LOC103493512 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1   MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHF 56
           M+IMEECL+VYLRQQVDYIGKRV  KLMN WRLMDE AVL AIYLLGSGDL QHF
Sbjct: 613 MIIMEECLIVYLRQQVDYIGKRVLSKLMNEWRLMDELAVLRAIYLLGSGDLLQHF 667

[Close]
BLAST of MELO3C010311.2 vs. TrEMBL
Match: tr|A0A0A0L296|A0A0A0L296_CUCSA (Gamma-tubulin complex component OS=Cucumis sativus OX=3659 GN=Csa_4G638490 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-17
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 1   MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHF 56
           MVIMEECLVVYLRQQVDYIGK V  KLMN WRLMDE AVL AIYLLGSGDL QHF
Sbjct: 607 MVIMEECLVVYLRQQVDYIGKHVLSKLMNEWRLMDELAVLRAIYLLGSGDLLQHF 661

[Close]
BLAST of MELO3C010311.2 vs. TrEMBL
Match: tr|A0A061FRW9|A0A061FRW9_THECC (Gamma-tubulin complex component OS=Theobroma cacao OX=3641 GN=TCM_044506 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-15
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0 

Query: 1   MVIMEECLVVYLRQQVDYIGKRVFLKLMNGWRLMDEQAVLHAIYLLGSGDLRQHF 56
           MVIM+ECL VY+++QVDYIG  +  KLMNGWRLMDE AVL AIYLLGSGDL QHF
Sbjct: 646 MVIMQECLTVYIKKQVDYIGSLILSKLMNGWRLMDELAVLRAIYLLGSGDLLQHF 700

The following BLAST results are available for this feature:
BLAST of MELO3C010311.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136607.11.6e-1789.09gamma-tubulin complex component 5-like [Momordica charantia][more]
XP_022975992.11.6e-1789.09gamma-tubulin complex component 5-like [Cucurbita maxima][more]
XP_008452496.12.7e-1785.45PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Cucumis melo][more]
XP_008452497.12.7e-1785.45PREDICTED: gamma-tubulin complex component 5-like isoform X2 [Cucumis melo][more]
XP_008452498.12.7e-1785.45PREDICTED: gamma-tubulin complex component 5-like isoform X3 [Cucumis melo][more]
BLAST of MELO3C010311.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G80260.11.3e-1669.09Spc97 / Spc98 family of spindle pole body (SBP) component[more]
AT1G20570.12.0e-1465.45Spc97 / Spc98 family of spindle pole body (SBP) component[more]
BLAST of MELO3C010311.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C010311.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BU00|A0A1S3BU00_CUCME1.8e-1785.45Gamma-tubulin complex component OS=Cucumis melo OX=3656 GN=LOC103493512 PE=3 SV=... [more]
tr|A0A1S3BTD0|A0A1S3BTD0_CUCME1.8e-1785.45Gamma-tubulin complex component OS=Cucumis melo OX=3656 GN=LOC103493512 PE=3 SV=... [more]
tr|A0A1S3BV48|A0A1S3BV48_CUCME1.8e-1785.45Gamma-tubulin complex component OS=Cucumis melo OX=3656 GN=LOC103493512 PE=3 SV=... [more]
tr|A0A0A0L296|A0A0A0L296_CUCSA4.0e-1787.27Gamma-tubulin complex component OS=Cucumis sativus OX=3659 GN=Csa_4G638490 PE=3 ... [more]
tr|A0A061FRW9|A0A061FRW9_THECC2.9e-1576.36Gamma-tubulin complex component OS=Theobroma cacao OX=3641 GN=TCM_044506 PE=3 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007020microtubule nucleation
GO:0000226microtubule cytoskeleton organization
Vocabulary: Molecular Function
TermDefinition
GO:0043015gamma-tubulin binding
Vocabulary: Cellular Component
TermDefinition
GO:0000922spindle pole
GO:0005815microtubule organizing center
Vocabulary: INTERPRO
TermDefinition
IPR007259GCP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0007020 microtubule nucleation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0005874 microtubule
cellular_component GO:0005815 microtubule organizing center
cellular_component GO:0000922 spindle pole
molecular_function GO:0043015 gamma-tubulin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010311.2.1MELO3C010311.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19302:SF33GAMMA-TUBULIN COMPLEX COMPONENT 5coord: 2..55
IPR007259Gamma-tubulin complex component proteinPANTHERPTHR19302GAMMA TUBULIN COMPLEX PROTEINcoord: 2..55

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010311.2Wax gourdmedwgoB268
MELO3C010311.2Wax gourdmedwgoB286
MELO3C010311.2Wax gourdmedwgoB290
MELO3C010311.2Cucumber (Gy14) v2cgybmedB045
MELO3C010311.2Cucumber (Gy14) v2cgybmedB092
MELO3C010311.2Cucumber (Gy14) v2cgybmedB162
MELO3C010311.2Cucumber (Gy14) v1cgymedB010
MELO3C010311.2Cucumber (Gy14) v1cgymedB210
MELO3C010311.2Cucumber (Gy14) v1cgymedB511
MELO3C010311.2Cucurbita maxima (Rimu)cmamedB023
MELO3C010311.2Cucurbita maxima (Rimu)cmamedB060
MELO3C010311.2Cucurbita maxima (Rimu)cmamedB112
MELO3C010311.2Cucurbita maxima (Rimu)cmamedB469
MELO3C010311.2Cucurbita maxima (Rimu)cmamedB811
MELO3C010311.2Cucurbita moschata (Rifu)cmomedB011
MELO3C010311.2Cucurbita moschata (Rifu)cmomedB052
MELO3C010311.2Cucurbita moschata (Rifu)cmomedB105
MELO3C010311.2Cucurbita moschata (Rifu)cmomedB806
MELO3C010311.2Cucurbita pepo (Zucchini)cpemedB104
MELO3C010311.2Cucurbita pepo (Zucchini)cpemedB392
MELO3C010311.2Cucurbita pepo (Zucchini)cpemedB604
MELO3C010311.2Cucurbita pepo (Zucchini)cpemedB734
MELO3C010311.2Cucurbita pepo (Zucchini)cpemedB851
MELO3C010311.2Wild cucumber (PI 183967)cpimedB042
MELO3C010311.2Wild cucumber (PI 183967)cpimedB105
MELO3C010311.2Wild cucumber (PI 183967)cpimedB181
MELO3C010311.2Cucumber (Chinese Long) v2cumedB038
MELO3C010311.2Cucumber (Chinese Long) v2cumedB182
MELO3C010311.2Melon (DHL92) v3.6.1medmedB102
MELO3C010311.2Melon (DHL92) v3.6.1medmedB113
MELO3C010311.2Bottle gourd (USVL1VR-Ls)lsimedB108
MELO3C010311.2Bottle gourd (USVL1VR-Ls)lsimedB309
MELO3C010311.2Bottle gourd (USVL1VR-Ls)lsimedB425
MELO3C010311.2Watermelon (Charleston Gray)medwcgB221
MELO3C010311.2Watermelon (Charleston Gray)medwcgB242
MELO3C010311.2Watermelon (Charleston Gray)medwcgB249
MELO3C010311.2Watermelon (97103) v1medwmB268
MELO3C010311.2Watermelon (97103) v1medwmB277
MELO3C010311.2Watermelon (97103) v1medwmB288
MELO3C010311.2Silver-seed gourdcarmedB0036
MELO3C010311.2Silver-seed gourdcarmedB0135
MELO3C010311.2Silver-seed gourdcarmedB0636
MELO3C010311.2Silver-seed gourdcarmedB0675
MELO3C010311.2Cucumber (Chinese Long) v3cucmedB052
MELO3C010311.2Cucumber (Chinese Long) v3cucmedB110
MELO3C010311.2Cucumber (Chinese Long) v3cucmedB185
MELO3C010311.2Cucumber (Chinese Long) v3cucmedB279
MELO3C010311.2Watermelon (97103) v2medwmbB225
MELO3C010311.2Watermelon (97103) v2medwmbB242
MELO3C010311.2Watermelon (97103) v2medwmbB251