MELO3C010158 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010158
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	T27c4.14 protein isoform 3
Location	chr2 : 14093376 .. 14093713 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGCAGCTGCATCTGCCTCAGCATTAGATGACAATATTGAATCTGAATATTTTCAAGCTTCCGTTTCTGGTGAGAGAATAACCTAGTTTGCAAAACAATTATTGGGATAAATGATGTTCTACCTGCTACCGTTTGTCATTATTTGCATTTTGTTGCTTCTGCAGCCATGGATGAAAGATTAAGTGCTTATGCTCTTATTGCGAGGGCAGCAATAAATGTCACAGTTCCCTTCCTCATAAGATTGTTATCAGAGCGTCTCTCGAAGCTTAATCAGGTTCCTCTTCCATGCACTAAGGATATCTTTGTGGTACATTCTACGATGTTAACTGCTTGA

mRNA sequence

ATGGTCGCAGCTGCATCTGCCTCAGCATTAGATGACAATATTGAATCTGAATATTTTCAAGCTTCCGTTTCTGCCATGGATGAAAGATTAAGTGCTTATGCTCTTATTGCGAGGGCAGCAATAAATGTCACAGTTCCCTTCCTCATAAGATTGTTATCAGAGCGTCTCTCGAAGCTTAATCAGGTTCCTCTTCCATGCACTAAGGATATCTTTGTGGTACATTCTACGATGTTAACTGCTTGA

Coding sequence (CDS)

ATGGTCGCAGCTGCATCTGCCTCAGCATTAGATGACAATATTGAATCTGAATATTTTCAAGCTTCCGTTTCTGCCATGGATGAAAGATTAAGTGCTTATGCTCTTATTGCGAGGGCAGCAATAAATGTCACAGTTCCCTTCCTCATAAGATTGTTATCAGAGCGTCTCTCGAAGCTTAATCAGGTTCCTCTTCCATGCACTAAGGATATCTTTGTGGTACATTCTACGATGTTAACTGCTTGA

Protein sequence

MVAAASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQVPLPCTKDIFVVHSTMLTA*

Homology

[Close]

BLAST of MELO3C010158 vs. TrEMBL
Match: A0A0A0M0V8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680090 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-20
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 4   AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 62
           AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRL SERLSKLNQ
Sbjct: 142 AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLFSERLSKLNQ 199

[Close]

BLAST of MELO3C010158 vs. TrEMBL
Match: K4DDS9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.5e-14
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 4   AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 62
           AASASA +D  E++Y QAS++AMDERLS+YALIARAAINVTVPFLIRL SE+ ++L Q
Sbjct: 223 AASASAFNDENETDYLQASIAAMDERLSSYALIARAAINVTVPFLIRLFSEKFARLQQ 280

[Close]

BLAST of MELO3C010158 vs. TrEMBL
Match: A0A0V0J004_SOLCH (Putative exportin-4-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.5e-14
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 4   AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 62
           AASASA +D  E++Y QAS++AMDERLS+YALIARAAINVTVPFLIRL SE+ ++L Q
Sbjct: 490 AASASAFNDENETDYLQASITAMDERLSSYALIARAAINVTVPFLIRLFSEKFARLQQ 547

[Close]

BLAST of MELO3C010158 vs. TrEMBL
Match: V4TW02_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100185681mg PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-12
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 1


Query: 5   ASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 62
           ASASA+DDN E  Y QAS+SAMDERLS+YALIARAAI+ TVP L RL SER+++L+Q
Sbjct: 343 ASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERVARLHQ 399

[Close]

BLAST of MELO3C010158 vs. TrEMBL
Match: A0A067E0Y3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0010133mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-12
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1


Query: 5   ASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 62
           ASASA+DDN E  Y QAS+SAMDERLS+YALIARAAI+ TVP L RL SER ++L+Q
Sbjct: 146 ASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQ 202

[Close]

BLAST of MELO3C010158 vs. TAIR10
Match: AT3G04490.1 (AT3G04490.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-10
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1


Query: 2   VAAASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 61
           VA+ASA+  DD        ASVSAMDERL +YALIARAA++ T+PFL +L S+ +++L+Q
Sbjct: 491 VASASATTEDD----ADCLASVSAMDERLGSYALIARAAVDATIPFLAKLFSDHVARLHQ 546

[Close]

BLAST of MELO3C010158 vs. NCBI nr
Match: gi|659086150|ref|XP_008443789.1| (PREDICTED: exportin-4 isoform X2 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 5.1e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 4   AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 62
           AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ
Sbjct: 381 AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 438

[Close]

BLAST of MELO3C010158 vs. NCBI nr
Match: gi|659086148|ref|XP_008443788.1| (PREDICTED: exportin-4 isoform X1 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 5.1e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1


Query: 4   AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 62
           AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ
Sbjct: 484 AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 541

[Close]

BLAST of MELO3C010158 vs. NCBI nr
Match: gi|778664303|ref|XP_011660266.1| (PREDICTED: exportin-4 isoform X1 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 4   AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 62
           AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRL SERLSKLNQ
Sbjct: 484 AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLFSERLSKLNQ 541

[Close]

BLAST of MELO3C010158 vs. NCBI nr
Match: gi|700211666|gb|KGN66762.1| (hypothetical protein Csa_1G680090 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 4   AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 62
           AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRL SERLSKLNQ
Sbjct: 142 AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLFSERLSKLNQ 199

[Close]

BLAST of MELO3C010158 vs. NCBI nr
Match: gi|778664306|ref|XP_011660267.1| (PREDICTED: exportin-4 isoform X2 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1


Query: 4   AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLLSERLSKLNQ 62
           AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRL SERLSKLNQ
Sbjct: 381 AASASALDDNIESEYFQASVSAMDERLSAYALIARAAINVTVPFLIRLFSERLSKLNQ 438

The following BLAST results are available for this feature:

BLAST of MELO3C010158 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0V8_CUCSA	1.0e-20	98.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680090 PE=4 SV=1	[more]
K4DDS9_SOLLC	9.5e-14	72.41	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0V0J004_SOLCH	9.5e-14	72.41	Putative exportin-4-like OS=Solanum chacoense PE=4 SV=1	[more]
V4TW02_9ROSI	1.0e-12	71.93	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100185681mg PE...	[more]
A0A067E0Y3_CITSI	1.4e-12	71.93	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0010133mg PE=4 ...	[more]

BLAST of MELO3C010158 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04490.1	7.4e-10	55.00	unknown protein	[more]

BLAST of MELO3C010158 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086150\|ref\|XP_008443789.1\|	5.1e-21	100.00	PREDICTED: exportin-4 isoform X2 [Cucumis melo]	[more]
gi\|659086148\|ref\|XP_008443788.1\|	5.1e-21	100.00	PREDICTED: exportin-4 isoform X1 [Cucumis melo]	[more]
gi\|778664303\|ref\|XP_011660266.1\|	1.5e-20	98.28	PREDICTED: exportin-4 isoform X1 [Cucumis sativus]	[more]
gi\|700211666\|gb\|KGN66762.1\|	1.5e-20	98.28	hypothetical protein Csa_1G680090 [Cucumis sativus]	[more]
gi\|778664306\|ref\|XP_011660267.1\|	1.5e-20	98.28	PREDICTED: exportin-4 isoform X2 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010158T1	MELO3C010158T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010158	Cucumber (Chinese Long) v3	cucmeB044
MELO3C010158	Cucumber (Gy14) v1	cgymeB485
MELO3C010158	Cucurbita maxima (Rimu)	cmameB107
MELO3C010158	Cucurbita moschata (Rifu)	cmomeB099
MELO3C010158	Wild cucumber (PI 183967)	cpimeB044
MELO3C010158	Wild cucumber (PI 183967)	cpimeB057
MELO3C010158	Cucumber (Chinese Long) v2	cumeB043
MELO3C010158	Bottle gourd (USVL1VR-Ls)	lsimeB398
MELO3C010158	Cucumber (Gy14) v2	cgybmeB040