MELO3C010144 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010144
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP-dependent zinc metalloprotease FtsH
Location	chr2 : 13810809 .. 13811603 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAAATCAAACTTAAGAAGCGAGCTGGTGTTGATCCAATTACACATGCATTTGATAGAATGAAGGTTAGAGCCAAATGCTAGAGTTTCTACTGTTTTTCTTCTGATAATTAACTGCTTAAATATACTTATGATCAGCGTGTGGTTTGCAGAGGGTCAAAAATCCACCAATACCTTTGAAAGATTTTGCTAGTATTGAGTCAATGAGAGAGGAGATCAATGAAGTTGTGGCATTTCTACAAAATCCTCGTGCTTTCCAAGAAATGGGTGCACGTGCCCCTCGGGTATGTTAAACTGATGGTAGATAGGCTGCTCTTTAAACTCCTCTCGGACATATTTCCCTTCTATTTTTCTACCTCAACAGTTTTATTTTTCATATTTTTATTTTTTAATAGTTGAATTTGACAGAATAATGTTTTGGTGGTCAACATTACTGGACAACGGTCTTACTCATTTGATTACAGTGTTGTTTGGTGCCTTCTGTGAGTTGTGGTGTGGCCATTACGAAGACCAAAACCGTCAAATGTTTAGAGAGGATTTCCTTCCCATTCTTCAGTCTTTTCTTTTCAAGGGAAAACAAACAGAACTTTTCATGAAAAGTTACAAAAATAACATCTGAAACAGGGTCCCCTACATCCAATTTAATAATCAAAGAAGCAGAAAACTAGCAACCCACACAAACCAACAACTCAAACTCAAATATTTGTTGTGTCCTATTTTTCTTCATTAAAGCCCCTTTATTTAATAGGGCTCTCTTTTGTGTGCTTGGTTTTTTCCTCCAATGAAATTGAG

mRNA sequence

ATGAGGAAAATCAAACTTAAGAAGCGAGCTGGTGTTGATCCAATTACACATGCATTTGATAGAATGAAGAGGGTCAAAAATCCACCAATACCTTTGAAAGATTTTGCTAGTATTGAGTCAATGAGAGAGGAGATCAATGAAGTTGTGGCATTTCTACAAAATCCTCGTGCTTTCCAAGAAATGGGTGCACGTGCCCCTCGGGTATGTTAAACTGATGGTAGATAGGCTGCTCTTTAAACTCCTCTCGGACATATTTCCCTTCTATTTTTCTACCTCAACAGTTTTATTTTTCATATTTTTATTTTTTAATAGTTGAATTTGACAGAATAATGTTTTGGTGGTCAACATTACTGGACAACGGTCTTACTCATTTGATTACAGTGTTGTTTGGTGCCTTCTGTGAGTTGTGGTGTGGCCATTACGAAGACCAAAACCGTCAAATGTTTAGAGAGGATTTCCTTCCCATTCTTCAGTCTTTTCTTTTCAAGGGAAAACAAACAGAACTTTTCATGAAAAGTTACAAAAATAACATCTGAAACAGGGTCCCCTACATCCAATTTAATAATCAAAGAAGCAGAAAACTAGCAACCCACACAAACCAACAACTCAAACTCAAATATTTGTTGTGTCCTATTTTTCTTCATTAAAGCCCCTTTATTTAATAGGGCTCTCTTTTGTGTGCTTGGTTTTTTCCTCCAATGAAATTGAG

Coding sequence (CDS)

ATGAGGAAAATCAAACTTAAGAAGCGAGCTGGTGTTGATCCAATTACACATGCATTTGATAGAATGAAGAGGGTCAAAAATCCACCAATACCTTTGAAAGATTTTGCTAGTATTGAGTCAATGAGAGAGGAGATCAATGAAGTTGTGGCATTTCTACAAAATCCTCGTGCTTTCCAAGAAATGGGTGCACGTGCCCCTCGGGTATGTTAA

Protein sequence

MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQEMGARAPRVC*

Homology

[Close]

BLAST of MELO3C010144 vs. Swiss-Prot
Match: FTSI5_ARATH (Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana GN=FTSHI5 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.7e-26
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 2   RKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQEM 61
           R+IK K++AG+DPI  AFDRMKRVKNPPIPLK+FASIESMREEINEVVAFLQNP+AFQEM
Sbjct: 753 RRIKQKRKAGIDPIKTAFDRMKRVKNPPIPLKNFASIESMREEINEVVAFLQNPKAFQEM 812

Query: 62  GARAPR 68
           GARAPR
Sbjct: 813 GARAPR 818

[Close]

BLAST of MELO3C010144 vs. TrEMBL
Match: A0A0A0M0C3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G674540 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.9e-28
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1   MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQE 60
           MR IK K+RAGVDPITHAFD MKRVKNPPIPLKDF+SIESM+EEINEVVAFLQNPRAFQE
Sbjct: 759 MRNIKHKRRAGVDPITHAFDGMKRVKNPPIPLKDFSSIESMKEEINEVVAFLQNPRAFQE 818

Query: 61  MGARAPRVC 70
           MGARAPRVC
Sbjct: 819 MGARAPRVC 827

[Close]

BLAST of MELO3C010144 vs. TrEMBL
Match: A0A061F1B5_THECC (Metalloprotease m41 ftsh, putative isoform 7 OS=Theobroma cacao GN=TCM_026140 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.9e-25
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1   MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQE 60
           +RKIK KKRAG+DPI  AFD MKRVKNPPIPLKDFASIESMREEINEVVAFLQNP AFQE
Sbjct: 734 LRKIKRKKRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQE 793

Query: 61  MGARAPR 68
           MGARAPR
Sbjct: 794 MGARAPR 800

[Close]

BLAST of MELO3C010144 vs. TrEMBL
Match: A0A061F1B0_THECC (Metalloprotease m41 ftsh, putative isoform 2 OS=Theobroma cacao GN=TCM_026140 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.9e-25
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1   MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQE 60
           +RKIK KKRAG+DPI  AFD MKRVKNPPIPLKDFASIESMREEINEVVAFLQNP AFQE
Sbjct: 734 LRKIKRKKRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQE 793

Query: 61  MGARAPR 68
           MGARAPR
Sbjct: 794 MGARAPR 800

[Close]

BLAST of MELO3C010144 vs. TrEMBL
Match: A0A061F2C6_THECC (Metalloprotease m41 ftsh, putative isoform 8 OS=Theobroma cacao GN=TCM_026140 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.9e-25
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1   MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQE 60
           +RKIK KKRAG+DPI  AFD MKRVKNPPIPLKDFASIESMREEINEVVAFLQNP AFQE
Sbjct: 734 LRKIKRKKRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQE 793

Query: 61  MGARAPR 68
           MGARAPR
Sbjct: 794 MGARAPR 800

[Close]

BLAST of MELO3C010144 vs. TrEMBL
Match: A0A061F8K6_THECC (Metalloprotease m41 ftsh, putative isoform 5 OS=Theobroma cacao GN=TCM_026140 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 7.9e-25
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1   MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQE 60
           +RKIK KKRAG+DPI  AFD MKRVKNPPIPLKDFASIESMREEINEVVAFLQNP AFQE
Sbjct: 734 LRKIKRKKRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQE 793

Query: 61  MGARAPR 68
           MGARAPR
Sbjct: 794 MGARAPR 800

[Close]

BLAST of MELO3C010144 vs. TAIR10
Match: AT3G04340.1 (AT3G04340.1 FtsH extracellular protease family)

HSP 1 Score: 118.6 bits (296), Expect = 1.5e-27
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 2   RKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQEM 61
           R+IK K++AG+DPI  AFDRMKRVKNPPIPLK+FASIESMREEINEVVAFLQNP+AFQEM
Sbjct: 753 RRIKQKRKAGIDPIKTAFDRMKRVKNPPIPLKNFASIESMREEINEVVAFLQNPKAFQEM 812

Query: 62  GARAPR 68
           GARAPR
Sbjct: 813 GARAPR 818

[Close]

BLAST of MELO3C010144 vs. NCBI nr
Match: gi|659086122|ref|XP_008443775.1| (PREDICTED: uncharacterized protein LOC103487285 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1   MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQE 60
           MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQE
Sbjct: 754 MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQE 813

Query: 61  MGARAPR 68
           MGARAPR
Sbjct: 814 MGARAPR 820

[Close]

BLAST of MELO3C010144 vs. NCBI nr
Match: gi|700211653|gb|KGN66749.1| (hypothetical protein Csa_1G674540 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-27
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1   MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQE 60
           MR IK K+RAGVDPITHAFD MKRVKNPPIPLKDF+SIESM+EEINEVVAFLQNPRAFQE
Sbjct: 759 MRNIKHKRRAGVDPITHAFDGMKRVKNPPIPLKDFSSIESMKEEINEVVAFLQNPRAFQE 818

Query: 61  MGARAPRVC 70
           MGARAPRVC
Sbjct: 819 MGARAPRVC 827

[Close]

BLAST of MELO3C010144 vs. NCBI nr
Match: gi|449449669|ref|XP_004142587.1| (PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 4.6e-26
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1   MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQE 60
           MR IK K+RAGVDPITHAFD MKRVKNPPIPLKDF+SIESM+EEINEVVAFLQNPRAFQE
Sbjct: 759 MRNIKHKRRAGVDPITHAFDGMKRVKNPPIPLKDFSSIESMKEEINEVVAFLQNPRAFQE 818

Query: 61  MGARAPR 68
           MGARAPR
Sbjct: 819 MGARAPR 825

[Close]

BLAST of MELO3C010144 vs. NCBI nr
Match: gi|590641821|ref|XP_007030339.1| (Metalloprotease m41 ftsh, putative isoform 2 [Theobroma cacao])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1   MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQE 60
           +RKIK KKRAG+DPI  AFD MKRVKNPPIPLKDFASIESMREEINEVVAFLQNP AFQE
Sbjct: 734 LRKIKRKKRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQE 793

Query: 61  MGARAPR 68
           MGARAPR
Sbjct: 794 MGARAPR 800

[Close]

BLAST of MELO3C010144 vs. NCBI nr
Match: gi|590641824|ref|XP_007030340.1| (Metalloprotease m41 ftsh, putative isoform 3 [Theobroma cacao])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-24
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 1


Query: 1   MRKIKLKKRAGVDPITHAFDRMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPRAFQE 60
           +RKIK KKRAG+DPI  AFD MKRVKNPPIPLKDFASIESMREEINEVVAFLQNP AFQE
Sbjct: 734 LRKIKRKKRAGIDPIRTAFDGMKRVKNPPIPLKDFASIESMREEINEVVAFLQNPGAFQE 793

Query: 61  MGARAPR 68
           MGARAPR
Sbjct: 794 MGARAPR 800

The following BLAST results are available for this feature:

BLAST of MELO3C010144 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FTSI5_ARATH	2.7e-26	86.36	Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=A...	[more]

BLAST of MELO3C010144 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0C3_CUCSA	9.9e-28	91.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G674540 PE=4 SV=1	[more]
A0A061F1B5_THECC	7.9e-25	89.55	Metalloprotease m41 ftsh, putative isoform 7 OS=Theobroma cacao GN=TCM_026140 PE...	[more]
A0A061F1B0_THECC	7.9e-25	89.55	Metalloprotease m41 ftsh, putative isoform 2 OS=Theobroma cacao GN=TCM_026140 PE...	[more]
A0A061F2C6_THECC	7.9e-25	89.55	Metalloprotease m41 ftsh, putative isoform 8 OS=Theobroma cacao GN=TCM_026140 PE...	[more]
A0A061F8K6_THECC	7.9e-25	89.55	Metalloprotease m41 ftsh, putative isoform 5 OS=Theobroma cacao GN=TCM_026140 PE...	[more]

BLAST of MELO3C010144 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04340.1	1.5e-27	86.36	FtsH extracellular protease family	[more]

BLAST of MELO3C010144 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086122\|ref\|XP_008443775.1\|	2.6e-29	100.00	PREDICTED: uncharacterized protein LOC103487285 [Cucumis melo]	[more]
gi\|700211653\|gb\|KGN66749.1\|	1.4e-27	91.30	hypothetical protein Csa_1G674540 [Cucumis sativus]	[more]
gi\|449449669\|ref\|XP_004142587.1\|	4.6e-26	91.04	PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus]	[more]
gi\|590641821\|ref\|XP_007030339.1\|	1.1e-24	89.55	Metalloprotease m41 ftsh, putative isoform 2 [Theobroma cacao]	[more]
gi\|590641824\|ref\|XP_007030340.1\|	1.1e-24	89.55	Metalloprotease m41 ftsh, putative isoform 3 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0008150	biological_process
biological_process	GO:0042981	regulation of apoptotic process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008568	microtubule-severing ATPase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010144T1	MELO3C010144T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23076	METALLOPROTEASE M41 FTSH	coord: 4..67 score: 1.6
None	No IPR available	PANTHER	PTHR23076:SF58	FTSH EXTRACELLULAR PROTEASE FAMILY PROTEIN	coord: 4..67 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010144	Csa1G674540	Cucumber (Chinese Long) v2	cumeB043
MELO3C010144	CSPI01G33170	Wild cucumber (PI 183967)	cpimeB044
MELO3C010144	Cucsa.027400	Cucumber (Gy14) v1	cgymeB651

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010144	Cucurbita maxima (Rimu)	cmameB107
MELO3C010144	Cucurbita moschata (Rifu)	cmomeB099
MELO3C010144	Watermelon (97103) v1	mewmB270
MELO3C010144	Bottle gourd (USVL1VR-Ls)	lsimeB398
MELO3C010144	Cucumber (Gy14) v2	cgybmeB040
MELO3C010144	Cucumber (Chinese Long) v3	cucmeB044