MELO3C010143 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010143
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP-dependent zinc metalloprotease FtsH
Location	chr2 : 13798718 .. 13798996 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCACTCGGAATTTGAAGAAAATTGATGAGGCTCTACAGCGGCCTGGGCGGATGGATCGAGTATTTCATCTTCAAAAACCAACACAATCTGAAAGAGAGAAAATACTACAAATTGCTGCAGAAGGATCCATGGATGAGGAACTCGTTAATTATGTAGATTGGAAAAAGGTAATTTGTATCCATCCTTCTTTTGTCCGTAATATTGCAAGTGTTTGCACTGAAGTCTTGTATGGTGCTTCGCACCAGAAAACTTCAAGGTCTTATTGCAGATAA

mRNA sequence

ATGGCTACCACTCGGAATTTGAAGAAAATTGATGAGGCTCTACAGCGGCCTGGGCGGATGGATCGAGTATTTCATCTTCAAAAACCAACACAATCTGAAAGAGAGAAAATACTACAAATTGCTGCAGAAGGATCCATGGATGAGGAACTCGTTAATTATGTAGATTGGAAAAAGGTAATTTGTATCCATCCTTCTTTTGTCCGTAATATTGCAAGTGTTTGCACTGAAGTCTTGTATGGTGCTTCGCACCAGAAAACTTCAAGGTCTTATTGCAGATAA

Coding sequence (CDS)

ATGGCTACCACTCGGAATTTGAAGAAAATTGATGAGGCTCTACAGCGGCCTGGGCGGATGGATCGAGTATTTCATCTTCAAAAACCAACACAATCTGAAAGAGAGAAAATACTACAAATTGCTGCAGAAGGATCCATGGATGAGGAACTCGTTAATTATGTAGATTGGAAAAAGGTAATTTGTATCCATCCTTCTTTTGTCCGTAATATTGCAAGTGTTTGCACTGAAGTCTTGTATGGTGCTTCGCACCAGAAAACTTCAAGGTCTTATTGCAGATAA

Protein sequence

MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKVICIHPSFVRNIASVCTEVLYGASHQKTSRSYCR*

Homology

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BLAST of MELO3C010143 vs. Swiss-Prot
Match: FTSI5_ARATH (Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana GN=FTSHI5 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.7e-18
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 1   MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV 60
           MATTRN K+IDEAL+RPGRMDRVFHLQ PT+ ERE+IL  AAE +MD ELV+ VDW+KV
Sbjct: 927 MATTRNHKQIDEALRRPGRMDRVFHLQSPTEMERERILHNAAEETMDRELVDLVDWRKV 985

[Close]

BLAST of MELO3C010143 vs. TrEMBL
Match: A0A0A0M0U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G673540 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.0e-21
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1  MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKVI 60
          MATTRNLK+ID+ALQRPGRMDRVFHLQ PTQ EREKILQIAAE  MDEEL+NYVDWKK++
Sbjct: 1  MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKIM 60

[Close]

BLAST of MELO3C010143 vs. TrEMBL
Match: K4B5N9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-19
Identity = 47/59 (79.66%), Postives = 58/59 (98.31%), Query Frame = 1


Query: 1   MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV 60
           MATTRNLK+IDEALQRPGRMDR+F LQ+PTQ+EREKIL+IAA+G+MDEEL+++VDW+KV
Sbjct: 904 MATTRNLKQIDEALQRPGRMDRIFRLQRPTQAEREKILRIAAKGTMDEELIDFVDWRKV 962

[Close]

BLAST of MELO3C010143 vs. TrEMBL
Match: A0A0V0IZ74_SOLCH (Putative ATP-dependent zinc metalloprotease FtsH-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-19
Identity = 47/59 (79.66%), Postives = 58/59 (98.31%), Query Frame = 1


Query: 1   MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV 60
           MATTRNLK+IDEALQRPGRMDR+F LQ+PTQ+EREKIL+IAA+G+MDEEL+++VDW+KV
Sbjct: 489 MATTRNLKQIDEALQRPGRMDRIFRLQRPTQAEREKILRIAAKGTMDEELIDFVDWRKV 547

[Close]

BLAST of MELO3C010143 vs. TrEMBL
Match: A0A0B0PX39_GOSAR (ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_06977 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 48/59 (81.36%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 1   MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV 60
           MATTRN+K+IDEALQRPGRMDRVFHLQ+PTQ+ERE+ILQIAA+ +MDEEL++ VDWKKV
Sbjct: 918 MATTRNIKQIDEALQRPGRMDRVFHLQRPTQAERERILQIAAKETMDEELIDMVDWKKV 976

[Close]

BLAST of MELO3C010143 vs. TrEMBL
Match: A0A0D2R067_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G273800 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 48/59 (81.36%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 1   MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV 60
           MATTRN+K+IDEALQRPGRMDRVFHLQ+PTQ+ERE+ILQIAA+ +MDEEL++ VDWKKV
Sbjct: 918 MATTRNIKQIDEALQRPGRMDRVFHLQRPTQAERERILQIAAKETMDEELIDMVDWKKV 976

[Close]

BLAST of MELO3C010143 vs. TAIR10
Match: AT3G04340.1 (AT3G04340.1 FtsH extracellular protease family)

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-19
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 1   MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV 60
           MATTRN K+IDEAL+RPGRMDRVFHLQ PT+ ERE+IL  AAE +MD ELV+ VDW+KV
Sbjct: 927 MATTRNHKQIDEALRRPGRMDRVFHLQSPTEMERERILHNAAEETMDRELVDLVDWRKV 985

[Close]

BLAST of MELO3C010143 vs. NCBI nr
Match: gi|659086122|ref|XP_008443775.1| (PREDICTED: uncharacterized protein LOC103487285 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1


Query: 1   MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV 60
           MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV
Sbjct: 929 MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV 987

[Close]

BLAST of MELO3C010143 vs. NCBI nr
Match: gi|449449669|ref|XP_004142587.1| (PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-20
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1


Query: 1   MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV 60
           MATTRNLK+ID+ALQRPGRMDRVFHLQ PTQ EREKILQIAAE  MDEEL+NYVDWKKV
Sbjct: 934 MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKV 992

[Close]

BLAST of MELO3C010143 vs. NCBI nr
Match: gi|700211651|gb|KGN66747.1| (hypothetical protein Csa_1G673540 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-20
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 1


Query: 1  MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKVI 60
          MATTRNLK+ID+ALQRPGRMDRVFHLQ PTQ EREKILQIAAE  MDEEL+NYVDWKK++
Sbjct: 1  MATTRNLKQIDDALQRPGRMDRVFHLQSPTQYEREKILQIAAEEFMDEELINYVDWKKIM 60

[Close]

BLAST of MELO3C010143 vs. NCBI nr
Match: gi|1021567622|ref|XP_016175030.1| (PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic [Arachis ipaensis])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 47/59 (79.66%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 1   MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV 60
           MATTRNLK+IDEALQRPGRMDR+FHLQ+PTQ+EREKIL +AAE +MD++L++YVDWKKV
Sbjct: 896 MATTRNLKQIDEALQRPGRMDRIFHLQRPTQAEREKILYLAAEETMDDQLIDYVDWKKV 954

[Close]

BLAST of MELO3C010143 vs. NCBI nr
Match: gi|1012238216|ref|XP_015940181.1| (PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic isoform X1 [Arachis duranensis])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 47/59 (79.66%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 1   MATTRNLKKIDEALQRPGRMDRVFHLQKPTQSEREKILQIAAEGSMDEELVNYVDWKKV 60
           MATTRNLK+IDEALQRPGRMDR+FHLQ+PTQ+EREKIL +AAE +MD++L++YVDWKKV
Sbjct: 896 MATTRNLKQIDEALQRPGRMDRIFHLQRPTQTEREKILYLAAEETMDDQLIDYVDWKKV 954

The following BLAST results are available for this feature:

BLAST of MELO3C010143 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FTSI5_ARATH	4.7e-18	74.58	Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=A...	[more]

BLAST of MELO3C010143 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0U2_CUCSA	7.0e-21	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G673540 PE=4 SV=1	[more]
K4B5N9_SOLLC	1.0e-19	79.66	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0V0IZ74_SOLCH	1.0e-19	79.66	Putative ATP-dependent zinc metalloprotease FtsH-like OS=Solanum chacoense PE=4 ...	[more]
A0A0B0PX39_GOSAR	1.3e-19	81.36	ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_06977 PE=4...	[more]
A0A0D2R067_GOSRA	1.3e-19	81.36	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G273800 PE=4 SV=1	[more]

BLAST of MELO3C010143 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04340.1	2.6e-19	74.58	FtsH extracellular protease family	[more]

BLAST of MELO3C010143 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086122\|ref\|XP_008443775.1\|	1.5e-24	100.00	PREDICTED: uncharacterized protein LOC103487285 [Cucumis melo]	[more]
gi\|449449669\|ref\|XP_004142587.1\|	1.0e-20	88.14	PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus]	[more]
gi\|700211651\|gb\|KGN66747.1\|	1.0e-20	85.00	hypothetical protein Csa_1G673540 [Cucumis sativus]	[more]
gi\|1021567622\|ref\|XP_016175030.1\|	1.1e-19	79.66	PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chlorop...	[more]
gi\|1012238216\|ref\|XP_015940181.1\|	1.1e-19	79.66	PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chlorop...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0042981	regulation of apoptotic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008568	microtubule-severing ATPase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010143T1	MELO3C010143T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 1..81 score: 4.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..74 score: 5.8
None	No IPR available	PANTHER	PTHR23076	METALLOPROTEASE M41 FTSH	coord: 1..60 score: 1.2
None	No IPR available	PANTHER	PTHR23076:SF58	FTSH EXTRACELLULAR PROTEASE FAMILY PROTEIN	coord: 1..60 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010143	Csa1G673540	Cucumber (Chinese Long) v2	cumeB043
MELO3C010143	CSPI01G33110	Wild cucumber (PI 183967)	cpimeB044
MELO3C010143	Cucsa.027440	Cucumber (Gy14) v1	cgymeB651
MELO3C010143	CmaCh10G010190	Cucurbita maxima (Rimu)	cmameB072
MELO3C010143	CmoCh10G010760	Cucurbita moschata (Rifu)	cmomeB065
MELO3C010143	CsaV3_1G045170	Cucumber (Chinese Long) v3	cucmeB044

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010143	Cucurbita maxima (Rimu)	cmameB107
MELO3C010143	Cucurbita moschata (Rifu)	cmomeB099
MELO3C010143	Watermelon (97103) v1	mewmB270
MELO3C010143	Bottle gourd (USVL1VR-Ls)	lsimeB398
MELO3C010143	Cucumber (Gy14) v2	cgybmeB040