MELO3C010141 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010141
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	PIF1-like helicase
Location	chr2 : 13762571 .. 13763031 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAAATACAACCTTCATCAGTTTCGATCTGACAATAGATGATACCAATTCTTACTATCGAGAAGAGTTCTTAAATTCTCTACTACCAAATGGAATACCACCACATAAACTTATATTAAAGGTGAATTGTCCATTTATGTTATTGAGAAATTTGGATCCATCTAATGGATTGTGTAATGGGACAAAATTGGTATGTCGATCATTTAGCAAAAATATTATATATGCTAAAATAGAAATTGGTGATAATGCAGGAAAACAAGTTTTTATTTCACGAATACCATTAGGCCCACCAAATGACAATGGATATCCATTCAAGTTCCAGAGAAAACAATTCCCCATTTACCTATGCTTTGCAATGACAATTAACAAAACACAAAGACAAACAATTCCTAATGTTGGAATATATGTTCCTGAAAATGTGTTTTCTCATGAACACTTTTGTCTAGAGGAATTTCAATAA

mRNA sequence

GAGAAAATACAACCTTCATCAGTTTCGATCTGACAATAGATGATACCAATTCTTACTATCGAGAAGAGTTCTTAAATTCTCTACTACCAAATGGAATACCACCACATAAACTTATATTAAAGGTGAATTGTCCATTTATGTTATTGAGAAATTTGGATCCATCTAATGGATTGTGTAATGGGACAAAATTGGTATGTCGATCATTTAGCAAAAATATTATATATGCTAAAATAGAAATTGGTGATAATGCAGGAAAACAAGTTTTTATTTCACGAATACCATTAGGCCCACCAAATGACAATGGATATCCATTCAAGTTCCAGAGAAAACAATTCCCCATTTACCTATGCTTTGCAATGACAATTAACAAAACACAAAGACAAACAATTCCTAATGTTGGAATATATGTTCCTGAAAATGTGTTTTCTCATGAACACTTTTGTCTAGAGGAATTTCAATAA

Coding sequence (CDS)

GAGAAAATACAACCTTCATCAGTTTCGATCTGACAATAGATGATACCAATTCTTACTATCGAGAAGAGTTCTTAAATTCTCTACTACCAAATGGAATACCACCACATAAACTTATATTAAAGGTGAATTGTCCATTTATGTTATTGAGAAATTTGGATCCATCTAATGGATTGTGTAATGGGACAAAATTGGTATGTCGATCATTTAGCAAAAATATTATATATGCTAAAATAGAAATTGGTGATAATGCAGGAAAACAAGTTTTTATTTCACGAATACCATTAGGCCCACCAAATGACAATGGATATCCATTCAAGTTCCAGAGAAAACAATTCCCCATTTACCTATGCTTTGCAATGACAATTAACAAAACACAAAGACAAACAATTCCTAATGTTGGAATATATGTTCCTGAAAATGTGTTTTCTCATGAACACTTTTGTCTAGAGGAATTTCAATAA

Protein sequence

ENTTFISFDLTIDDTNSYYREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNGTKLVCRSFSKNIIYAKIEIGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMTINKTQRQTIPNVGIYVPENVFSHEHFCLEEFQ*

Homology

[Close]

BLAST of MELO3C010141 vs. TrEMBL
Match: K4CED9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.6e-49
Identity = 93/143 (65.03%), Postives = 116/143 (81.12%), Query Frame = 1


Query: 1    ENTTFISFDLTIDDTNSYYREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNG 60
            E+  F SFD   DDTN+YY+EE+LN+L PNG+PPH+L LK N P MLLRNLDPS+GLCNG
Sbjct: 1224 ESKIFNSFDSAEDDTNNYYQEEYLNTLTPNGLPPHRLELKENAPIMLLRNLDPSSGLCNG 1283

Query: 61   TKLVCRSFSKNIIYAKIEIGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMT 120
            T+++CR FS+N+++A+I  G +A K VF+ RI L PP + GYPFKF RKQFPI LCFAMT
Sbjct: 1284 TRMICRGFSQNVLHAEISSGHSATKYVFLPRIQLLPPENEGYPFKFIRKQFPIRLCFAMT 1343

Query: 121  INKTQRQTIPNVGIYVPENVFSH 144
            INK Q QTI NVG+Y+P++VFSH
Sbjct: 1344 INKAQGQTIHNVGLYLPQHVFSH 1366

[Close]

BLAST of MELO3C010141 vs. TrEMBL
Match: K4BI98_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.7e-49
Identity = 92/143 (64.34%), Postives = 114/143 (79.72%), Query Frame = 1


Query: 1   ENTTFISFDLTIDDTNSYYREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNG 60
           E+  F SFD   DDTN YY+EE+LN+L PNG+PPH+L LK N P MLLRNLDPS+GLCN 
Sbjct: 94  ESKLFNSFDSAEDDTNYYYQEEYLNTLTPNGLPPHRLELKKNAPIMLLRNLDPSSGLCND 153

Query: 61  TKLVCRSFSKNIIYAKIEIGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMT 120
           T+++CR FS+N+++A+I  G +A K VF+ RI L PP + GYPFKF RKQFPI LCFAMT
Sbjct: 154 TRMICRGFSQNVLHAEISTGHSATKHVFLPRIQLSPPENEGYPFKFIRKQFPIRLCFAMT 213

Query: 121 INKTQRQTIPNVGIYVPENVFSH 144
           INK Q QTI NVG+Y+P++VFSH
Sbjct: 214 INKAQGQTIHNVGLYLPQHVFSH 236

[Close]

BLAST of MELO3C010141 vs. TrEMBL
Match: A0A0A9DUN1_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.5e-48
Identity = 90/143 (62.94%), Postives = 115/143 (80.42%), Query Frame = 1


Query: 1    ENTTFISFDLTIDDTNSYYREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNG 60
            +   + SFD  +DD ++YY  EFLNSL PNG+PPH L LK+NCP +LLRN+DP+NGLCNG
Sbjct: 868  DEMVYHSFDCAVDDPHNYYPSEFLNSLTPNGLPPHVLTLKINCPIILLRNIDPANGLCNG 927

Query: 61   TKLVCRSFSKNIIYAKIEIGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMT 120
            T+LV R+F +N I A+I +G +AGK+VF+ RIPL P +D  +PF+F+RKQFPI L FAMT
Sbjct: 928  TRLVVRAFQRNAIDAEIVLGQHAGKRVFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMT 987

Query: 121  INKTQRQTIPNVGIYVPENVFSH 144
            +NK+Q QTIPNVGIY+PE VFSH
Sbjct: 988  VNKSQGQTIPNVGIYLPEPVFSH 1010

[Close]

BLAST of MELO3C010141 vs. TrEMBL
Match: Q10GM7_ORYSJ (Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os03g42380 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.2e-47
Identity = 90/140 (64.29%), Postives = 111/140 (79.29%), Query Frame = 1


Query: 4    TFISFDLTIDDTNSYYREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNGTKL 63
            T+ SFD   DD ++YY  EFLNSL PNG+PPH L LK+NCP MLLRN+DP+NGLCNGT+L
Sbjct: 1423 TYHSFDRADDDPHNYYPPEFLNSLTPNGLPPHVLKLKINCPIMLLRNIDPANGLCNGTRL 1482

Query: 64   VCRSFSKNIIYAKIEIGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMTINK 123
            V R F KN I A+I +G +AGK+VF+ RIPL P +D  +PF+F+RKQFP+ L FA+TINK
Sbjct: 1483 VVRQFGKNAIDAEIVVGQHAGKRVFLPRIPLCPSDDEMFPFRFKRKQFPVRLSFALTINK 1542

Query: 124  TQRQTIPNVGIYVPENVFSH 144
             Q QTIPN G+Y+PE VFSH
Sbjct: 1543 AQGQTIPNAGVYLPEPVFSH 1562

[Close]

BLAST of MELO3C010141 vs. TrEMBL
Match: Q851V4_ORYSJ (Putative helicase OS=Oryza sativa subsp. japonica GN=OSJNBb0111B07.18 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.2e-47
Identity = 90/140 (64.29%), Postives = 111/140 (79.29%), Query Frame = 1


Query: 4    TFISFDLTIDDTNSYYREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNGTKL 63
            T+ SFD   DD ++YY  EFLNSL PNG+PPH L LK+NCP MLLRN+DP+NGLCNGT+L
Sbjct: 1424 TYHSFDRADDDPHNYYPPEFLNSLTPNGLPPHVLKLKINCPIMLLRNIDPANGLCNGTRL 1483

Query: 64   VCRSFSKNIIYAKIEIGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMTINK 123
            V R F KN I A+I +G +AGK+VF+ RIPL P +D  +PF+F+RKQFP+ L FA+TINK
Sbjct: 1484 VVRQFGKNAIDAEIVVGQHAGKRVFLPRIPLCPSDDEMFPFRFKRKQFPVRLSFALTINK 1543

Query: 124  TQRQTIPNVGIYVPENVFSH 144
             Q QTIPN G+Y+PE VFSH
Sbjct: 1544 AQGQTIPNAGVYLPEPVFSH 1563

[Close]

BLAST of MELO3C010141 vs. TAIR10
Match: AT5G28780.1 (AT5G28780.1 PIF1 helicase)

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-25
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = 1


Query: 14  DTNSYYREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNGTKLVCRSFSKNII 73
           D  + Y  ++LNSL    +P HK+ LK   P M +RN +   GLCNGT+L+  +  + +I
Sbjct: 161 DYEALYHVKYLNSLEFPSLPKHKISLKKGVPIMQMRNFNQKEGLCNGTRLIVTNLGEQVI 220

Query: 74  YAKIEIGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMTINKTQRQTIPNVG 133
            A+I  G +AGK V I R  L PP    +PF  +R+QFP+ +C+AMTI K Q Q++ +  
Sbjct: 221 EAQIVTGTHAGKMVSIPRFILSPPQSE-HPFTLRRQQFPMRVCYAMTIIKNQGQSLKSDV 280

Query: 134 IYVPENVFSH 144
           +Y+P  VFSH
Sbjct: 281 LYLPNPVFSH 289

[Close]

BLAST of MELO3C010141 vs. TAIR10
Match: AT3G51690.1 (AT3G51690.1 PIF1 helicase)

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-22
Identity = 53/122 (43.44%), Postives = 73/122 (59.84%), Query Frame = 1


Query: 22  EFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNGTKLVCRSFSKNIIYAKIEIGD 81
           E LNS+   G+P  KL LKV  P MLLR+LDPS G   GT+L        ++ A I  G+
Sbjct: 167 EVLNSIKVPGLPDFKLRLKVGAPVMLLRDLDPSRGFFTGTRLQITRLCGFLLEAMIIAGN 226

Query: 82  NAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMTINKTQRQTIPNVGIYVPENVF 141
             GK+++I RI    P +  +P + +R Q+P+ L FAMTI+++Q  T+  VG+Y+P  VF
Sbjct: 227 KHGKKIWIPRI-ASYPTETNFPLQMRRTQYPLKLAFAMTIDESQVHTLSKVGLYLPRQVF 286

Query: 142 SH 144
           SH
Sbjct: 287 SH 287

[Close]

BLAST of MELO3C010141 vs. TAIR10
Match: AT3G51700.1 (AT3G51700.1 PIF1 helicase)

HSP 1 Score: 100.9 bits (250), Expect = 7.1e-22
Identity = 56/125 (44.80%), Postives = 73/125 (58.40%), Query Frame = 1


Query: 19  YREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNGTKLVCRSFSKNIIYAKIE 78
           Y  EFLNS+   G P  KL LKV  P MLLR+L P   L  GT+L        ++ A I 
Sbjct: 168 YPLEFLNSIKIPGFPDFKLRLKVGAPVMLLRDLAPYGWLRKGTRLQITRVETFVLEAMII 227

Query: 79  IGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMTINKTQRQTIPNVGIYVPE 138
            G+N G++V I RIP     +  +P K +R+QFP+ L FAMTI+++QRQT+  VGIY+P 
Sbjct: 228 TGNNHGEKVLIPRIP-SDLREAKFPIKMRRRQFPVKLAFAMTIDESQRQTLSKVGIYLPR 287

Query: 139 NVFSH 144
            +  H
Sbjct: 288 QLLFH 291

[Close]

BLAST of MELO3C010141 vs. NCBI nr
Match: gi|971564338|ref|XP_015167741.1| (PREDICTED: ATP-dependent DNA helicase RRM3-like [Solanum tuberosum])

HSP 1 Score: 219.9 bits (559), Expect = 3.0e-54
Identity = 101/143 (70.63%), Postives = 118/143 (82.52%), Query Frame = 1


Query: 1   ENTTFISFDLTIDDTNSYYREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNG 60
           E  T+ISFD   DDTN+YY+EE+LN+L PNG+PPH+L+LK N P MLLRNLDPSNGLCNG
Sbjct: 454 ETKTYISFDSAEDDTNNYYQEEYLNTLTPNGLPPHRLVLKENAPIMLLRNLDPSNGLCNG 513

Query: 61  TKLVCRSFSKNIIYAKIEIGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMT 120
           T+L+CR F KNII+A+I  G  A KQVFI RI L PP + GYPFKF RKQFPI LCFAMT
Sbjct: 514 TRLICRGFDKNIIHAEITTGQYATKQVFIPRIQLSPPENEGYPFKFIRKQFPIRLCFAMT 573

Query: 121 INKTQRQTIPNVGIYVPENVFSH 144
           INK Q QTIPNVG+Y+P++VFSH
Sbjct: 574 INKAQGQTIPNVGLYLPQHVFSH 596

[Close]

BLAST of MELO3C010141 vs. NCBI nr
Match: gi|848874370|ref|XP_012837726.1| (PREDICTED: uncharacterized protein LOC105958267 [Erythranthe guttata])

HSP 1 Score: 217.2 bits (552), Expect = 1.9e-53
Identity = 97/143 (67.83%), Postives = 118/143 (82.52%), Query Frame = 1


Query: 1    ENTTFISFDLTIDDTNSYYREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNG 60
            E  +F S+D  IDD N+YY EEFLNSL PNG+PPHKL+LK+NCP +LLRNLDPSNGLCNG
Sbjct: 914  EGRSFHSYDEAIDDVNNYYEEEFLNSLSPNGLPPHKLLLKINCPIILLRNLDPSNGLCNG 973

Query: 61   TKLVCRSFSKNIIYAKIEIGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMT 120
            T++VCR+F  N+I A+I  G ++GK VFI RIPL P  + GYPFKF+RKQFP+ LCFAMT
Sbjct: 974  TRMVCRNFKDNVIDAEIVFGQHSGKHVFIPRIPLSPAENEGYPFKFKRKQFPVRLCFAMT 1033

Query: 121  INKTQRQTIPNVGIYVPENVFSH 144
            INK Q QTI NVG+Y+P++VFSH
Sbjct: 1034 INKAQGQTISNVGVYLPQSVFSH 1056

[Close]

BLAST of MELO3C010141 vs. NCBI nr
Match: gi|971564515|ref|XP_015167793.1| (PREDICTED: uncharacterized protein LOC107062081 [Solanum tuberosum])

HSP 1 Score: 217.2 bits (552), Expect = 1.9e-53
Identity = 98/143 (68.53%), Postives = 118/143 (82.52%), Query Frame = 1


Query: 1    ENTTFISFDLTIDDTNSYYREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNG 60
            E  T+ISFD   DDTN+YY+EE+LN+L PNG+PPH+L+LK N P M+LRNLDPSNGLCNG
Sbjct: 1127 ETKTYISFDSAEDDTNNYYQEEYLNTLTPNGLPPHRLVLKENAPIMMLRNLDPSNGLCNG 1186

Query: 61   TKLVCRSFSKNIIYAKIEIGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMT 120
            T+L+CR F  N+I+A+I  G+ A KQVFI RI L PP + GYPFKF RKQFPI LCFAMT
Sbjct: 1187 TRLICRGFDNNVIHAEITTGEFATKQVFIPRIQLSPPENEGYPFKFIRKQFPIRLCFAMT 1246

Query: 121  INKTQRQTIPNVGIYVPENVFSH 144
            INK Q QTIPNVG+Y+P++VFSH
Sbjct: 1247 INKAQGQTIPNVGLYLPQHVFSH 1269

[Close]

BLAST of MELO3C010141 vs. NCBI nr
Match: gi|848881324|ref|XP_012841028.1| (PREDICTED: uncharacterized protein LOC105961341 [Erythranthe guttata])

HSP 1 Score: 216.1 bits (549), Expect = 4.3e-53
Identity = 98/140 (70.00%), Postives = 115/140 (82.14%), Query Frame = 1


Query: 4    TFISFDLTIDDTNSYYREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNGTKL 63
            TF SFD  IDDTN+ Y E+FLNSL PNG+PPHKL+LK NCP +LLRNLDPSNGLCNGT++
Sbjct: 1347 TFQSFDEAIDDTNNNYEEDFLNSLTPNGLPPHKLVLKRNCPIILLRNLDPSNGLCNGTRM 1406

Query: 64   VCRSFSKNIIYAKIEIGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMTINK 123
            VCR+F  N+I A+I  G + GK VFI RIPL P  + GYPFKF+RKQFPI LCFAMTINK
Sbjct: 1407 VCRNFKSNVIDAEIVFGQHVGKHVFIPRIPLSPAENEGYPFKFKRKQFPIRLCFAMTINK 1466

Query: 124  TQRQTIPNVGIYVPENVFSH 144
             Q QTIPN+G+Y+P+ VFSH
Sbjct: 1467 AQGQTIPNIGVYLPQPVFSH 1486

[Close]

BLAST of MELO3C010141 vs. NCBI nr
Match: gi|848881561|ref|XP_012841137.1| (PREDICTED: uncharacterized protein LOC105961450 [Erythranthe guttata])

HSP 1 Score: 213.0 bits (541), Expect = 3.7e-52
Identity = 97/139 (69.78%), Postives = 114/139 (82.01%), Query Frame = 1


Query: 4    TFISFDLTIDDTNSYYREEFLNSLLPNGIPPHKLILKVNCPFMLLRNLDPSNGLCNGTKL 63
            TF SFD  IDDTN+ Y E+FLNSL PNG+PPHKL+LK NCP +LLRNLDPSNGLCNGT++
Sbjct: 1141 TFQSFDEAIDDTNNNYEEDFLNSLTPNGLPPHKLVLKRNCPIILLRNLDPSNGLCNGTRM 1200

Query: 64   VCRSFSKNIIYAKIEIGDNAGKQVFISRIPLGPPNDNGYPFKFQRKQFPIYLCFAMTINK 123
            VCR+F  N+I A+I  G + GK VFI RIPL P  + GYPFKF+RKQFPI LCFAMTINK
Sbjct: 1201 VCRNFKSNVIDAEIVFGQHVGKHVFIPRIPLSPAENEGYPFKFKRKQFPIRLCFAMTINK 1260

Query: 124  TQRQTIPNVGIYVPENVFS 143
             Q QTIPN+G+Y+P+ VFS
Sbjct: 1261 AQGQTIPNIGVYLPQPVFS 1279

The following BLAST results are available for this feature:

BLAST of MELO3C010141 vs. TrEMBL


Match Name	E-value	Identity	Description
K4CED9_SOLLC	2.6e-49	65.03	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
K4BI98_SOLLC	7.7e-49	64.34	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0A9DUN1_ARUDO	6.5e-48	62.94	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
Q10GM7_ORYSJ	4.2e-47	64.29	Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os03g42380 PE=4 SV=1	[more]
Q851V4_ORYSJ	4.2e-47	64.29	Putative helicase OS=Oryza sativa subsp. japonica GN=OSJNBb0111B07.18 PE=4 SV=1	[more]

BLAST of MELO3C010141 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28780.1	9.0e-25	42.31	PIF1 helicase	[more]
AT3G51690.1	4.2e-22	43.44	PIF1 helicase	[more]
AT3G51700.1	7.1e-22	44.80	PIF1 helicase	[more]

BLAST of MELO3C010141 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|971564338\|ref\|XP_015167741.1\|	3.0e-54	70.63	PREDICTED: ATP-dependent DNA helicase RRM3-like [Solanum tuberosum]	[more]
gi\|848874370\|ref\|XP_012837726.1\|	1.9e-53	67.83	PREDICTED: uncharacterized protein LOC105958267 [Erythranthe guttata]	[more]
gi\|971564515\|ref\|XP_015167793.1\|	1.9e-53	68.53	PREDICTED: uncharacterized protein LOC107062081 [Solanum tuberosum]	[more]
gi\|848881324\|ref\|XP_012841028.1\|	4.3e-53	70.00	PREDICTED: uncharacterized protein LOC105961341 [Erythranthe guttata]	[more]
gi\|848881561\|ref\|XP_012841137.1\|	3.7e-52	69.78	PREDICTED: uncharacterized protein LOC105961450 [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010285	DNA_helicase_pif1-like
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0000723	telomere maintenance
GO:0006281	DNA repair

Vocabulary: **Molecular Function**
Term	Definition
GO:0003678	DNA helicase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006281	DNA repair
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0005657	replication fork
molecular_function	GO:0003678	DNA helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010141T1	MELO3C010141T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010285	DNA helicase Pif1-like	PFAM	PF05970	PIF1	coord: 8..65 score: 3.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 78..145 score: 7.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 20..144 score: 3.35
None	No IPR available	PANTHER	PTHR10492	UNCHARACTERIZED	coord: 3..127 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010141	Bottle gourd (USVL1VR-Ls)	lsimeB398
MELO3C010141	Cucumber (Gy14) v2	cgybmeB040
MELO3C010141	Cucumber (Chinese Long) v3	cucmeB044
MELO3C010141	Cucumber (Gy14) v1	cgymeB651
MELO3C010141	Cucurbita maxima (Rimu)	cmameB072
MELO3C010141	Cucurbita maxima (Rimu)	cmameB107
MELO3C010141	Cucurbita moschata (Rifu)	cmomeB065
MELO3C010141	Cucurbita moschata (Rifu)	cmomeB099
MELO3C010141	Wild cucumber (PI 183967)	cpimeB044
MELO3C010141	Cucumber (Chinese Long) v2	cumeB043
MELO3C010141	Watermelon (97103) v1	mewmB270