MELO3C010139 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010139
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA topoisomerase 1
Locationchr2 : 13740521 .. 13740694 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTAAGGAAACTTTGTCGCCTGTGTCTACAAAGAGTCCTAAGAAGAAAAACCCATTGCCTGATAAATCCAAATCCTCCAAGGCCACTAGCACTAAAACTCCTACCAAGTCCAAAACGCCACCACCTCCCAAGAAATCCAAGTCGTTAACCTCAATCCAACAAATCTAA

mRNA sequence

ATGGAATCTAAGGAAACTTTGTCGCCTGTGTCTACAAAGAGTCCTAAGAAGAAAAACCCATTGCCTGATAAATCCAAATCCTCCAAGGCCACTAGCACTAAAACTCCTACCAAGTCCAAAACGCCACCACCTCCCAAGAAATCCAAGTCGTTAACCTCAATCCAACAAATCTAA

Coding sequence (CDS)

ATGGAATCTAAGGAAACTTTGTCGCCTGTGTCTACAAAGAGTCCTAAGAAGAAAAACCCATTGCCTGATAAATCCAAATCCTCCAAGGCCACTAGCACTAAAACTCCTACCAAGTCCAAAACGCCACCACCTCCCAAGAAATCCAAGTCGTTAACCTCAATCCAACAAATCTAA

Protein sequence

MESKETLSPVSTKSPKKKNPLPDKSKSSKATSTKTPTKSKTPPPPKKSKSLTSIQQI*
Homology
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BLAST of MELO3C010139 vs. NCBI nr
Match: gi|659123193|ref|XP_008461541.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 8.0e-08
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 2   ESKETLSPVSTKSPKKKN----PLPDKSKSSKATSTKTPTKSKT-PPPPKKSKSLTSIQQ 58
           +SKE      TKSPKKK     P  +K KSSKATS++TPTKSKT PPPPKKSKS T  Q+
Sbjct: 87  DSKENFLSTFTKSPKKKKLTNLPSLNKYKSSKATSSQTPTKSKTPPPPPKKSKSPTISQE 146

The following BLAST results are available for this feature:
BLAST of MELO3C010139 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123193|ref|XP_008461541.1|8.0e-0862.30PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010139T1MELO3C010139T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010139Cucumber (Chinese Long) v3cucmeB044
MELO3C010139Cucumber (Gy14) v1cgymeB651
MELO3C010139Cucurbita maxima (Rimu)cmameB072
MELO3C010139Cucurbita maxima (Rimu)cmameB107
MELO3C010139Cucurbita moschata (Rifu)cmomeB065
MELO3C010139Cucurbita moschata (Rifu)cmomeB099
MELO3C010139Wild cucumber (PI 183967)cpimeB044
MELO3C010139Cucumber (Chinese Long) v2cumeB043
MELO3C010139Watermelon (97103) v1mewmB270
MELO3C010139Bottle gourd (USVL1VR-Ls)lsimeB398
MELO3C010139Cucumber (Gy14) v2cgybmeB040