MELO3C010138 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010138
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSerine--tRNA ligase
Locationchr2 : 13732161 .. 13732517 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCGACAAAGATCAAAGATCGGGTAACAAAAGCGCGTTCAGAGACCTTTGCTGATATAGGATCTAATGTCCCAAACATGTTTAATGACGACGTTCCACTCGGTGATTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGAGCATATGTCACCAGATGAGATCTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAAAAAATGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGTGAACATTCTGAAACAGTAGAGATGATGAGGAGTGCATTAGAATTTGGAAATGATCAATTAAAGGCAATTGCAAATTGGCTAAAAGAGAAGCGTGCAATAGAGGTCGAATGA

mRNA sequence

ATGTCTTCGACAAAGATCAAAGATCGGGTAACAAAAGCGCGTTCAGAGACCTTTGCTGATATAGGATCTAATGTCCCAAACATGTTTAATGACGACGTTCCACTCGGTGATTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGAGCATATGTCACCAGATGAGATCTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAAAAAATGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGTGAACATTCTGAAACAGTAGAGATGATGAGGAGTGCATTAGAATTTGGAAATGATCAATTAAAGGCAATTGCAAATTGGCTAAAAGAGAAGCGTGCAATAGAGGTCGAATGA

Coding sequence (CDS)

ATGTCTTCGACAAAGATCAAAGATCGGGTAACAAAAGCGCGTTCAGAGACCTTTGCTGATATAGGATCTAATGTCCCAAACATGTTTAATGACGACGTTCCACTCGGTGATTCACATGATCAAGACATCCCGATGATGTATAGCCAAGGAGAGCATATGTCACCAGATGAGATCTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAAAAAATGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGTGAACATTCTGAAACAGTAGAGATGATGAGGAGTGCATTAGAATTTGGAAATGATCAATTAAAGGCAATTGCAAATTGGCTAAAAGAGAAGCGTGCAATAGAGGTCGAATGA

Protein sequence

MSSTKIKDRVTKARSETFADIGSNVPNMFNDDVPLGDSHDQDIPMMYSQGEHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHSETVEMMRSALEFGNDQLKAIANWLKEKRAIEVE*
Homology
[Close]
BLAST of MELO3C010138 vs. TrEMBL
Match: E5GBB1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-30
Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 1 

Query: 28  MFNDDVPLGDSHDQDIPMMYSQGEHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHSET 87
           MFND VPLGDSHDQDIP MYSQG HM  +E+FGIRA QASER+ CSSGSKRK+GSEH E 
Sbjct: 1   MFNDGVPLGDSHDQDIPTMYSQGVHMLSNEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60

Query: 88  VEMMRSALEFGNDQLKAIANWLKEKRAIEVE 119
           VE+++SA+EFGNDQLKA  +W K+K + EVE
Sbjct: 61  VEVIKSAMEFGNDQLKAFEDWSKDKHSTEVE 91

[Close]
BLAST of MELO3C010138 vs. TrEMBL
Match: A0A0A0M036_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654880 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-23
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 1 

Query: 6   IKDRVTKARSETFADIGSNVPNMFNDDVPLGDSHDQDIPMMYSQGEHMSPDEIFGIRAGQ 65
           IKD+ T+ R E F DI SNVPN FND VP GDSHD +I MMYSQG  MS DE+ G   GQ
Sbjct: 24  IKDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPNILMMYSQGMDMSSDEMLGTCVGQ 83

Query: 66  ASERKKCSSGSKRKRGSEHSETVEMMRSALEFGNDQLK 104
            SE +  S+G+KRK+G ++ E +E++R+A+EF ND LK
Sbjct: 84  TSEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPLK 121

[Close]
BLAST of MELO3C010138 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-16
Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 1 

Query: 7   KDRVTKARSETFADIGSNVPNMFNDDVPLGDSH-DQDIPMMYSQGEHMSPDEIFGIRAGQ 66
           KDR T  R+E+FADIGSN P  +  D    D+  D D P MYS G +MSPD++   R  +
Sbjct: 490 KDRATGGRAESFADIGSNDPPGY--DAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTAR 549

Query: 67  ASERKKCSSGSKRKRGSEHSETVEMMRSALEFGNDQLKAIANW 109
            SER+  SSGSKRKR    +++ +++R+A+E+GN+QL  IA W
Sbjct: 550 VSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEW 590

[Close]
BLAST of MELO3C010138 vs. TrEMBL
Match: A0A0A0KFW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.3e-15
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 1 

Query: 46  MYSQGEHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHSETVEMMRSALEFGNDQLKAI 105
           MYSQG  M PDE+ G R  Q+SE + CSSGSKRK G +H E V+++ + +E  NDQLKAI
Sbjct: 1   MYSQGLDMPPDEMLGTR--QSSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAI 60

Query: 106 ANWLKEKRAIEVE 119
           ANW KEKRA EVE
Sbjct: 61  ANWSKEKRATEVE 71

[Close]
BLAST of MELO3C010138 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-13
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = 1 

Query: 7   KDRVTKARSETFADIGSNVPNMFNDDVPLGDSHDQDIPMMYSQGEHMSPDEIFGIRAGQA 66
           +DR T   +ETFAD+GSN P    D   +GD ++ D P +YS+G  +  D++   R  +A
Sbjct: 455 RDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSRGVDILQDDVRASRPSRA 514

Query: 67  SERKKCSSGSKRKRGSEHSETVEMMRSALEFGNDQLKAIANW 109
           SE K  SSGSKRKRGS+    VE +  AL+  N+QL+ IA W
Sbjct: 515 SEGKTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEW 555

[Close]
BLAST of MELO3C010138 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 9.2e-43
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 1 

Query: 7   KDRVTKARSETFADIGSNVPNMFNDDVPLGDSHDQDIPMMYSQGEHMSPDEIFGIRAGQA 66
           KDR T ARSETF ++GSNV NMFND +PLGDSHD+DIP MYSQG HMSPDE+FGIRAGQA
Sbjct: 138 KDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQA 197

Query: 67  SERKKCSSGSKRKRGSEHSETVEMMRSALEFGNDQLKAIANWLKEKRAIEVE 119
           SER+ CSS SKRKRGSE  ETVE++RS +EFGN+QLKAIA+W KEKRA+EVE
Sbjct: 198 SERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVE 249

[Close]
BLAST of MELO3C010138 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 7.5e-37
Identity = 83/111 (74.77%), Postives = 90/111 (81.08%), Query Frame = 1 

Query: 8   DRVTKARSETFADIGSNVPNMFNDDVPLGDSHDQDIPMMYSQGEHMSPDEIFGIRAGQAS 67
           D  T A SETFAD GSNV NMFND VPLGDSH+QDI  +YSQG HMS DEIFGIRAGQAS
Sbjct: 96  DGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQAS 155

Query: 68  ERKKCSSGSKRKRGSEHSETVEMMRSALEFGNDQLKAIANWLKEKRAIEVE 119
           ER+  SSGSKRKRGS+H E VE++ SA EFGNDQLK I +W KEKRA EVE
Sbjct: 156 ERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVE 206

[Close]
BLAST of MELO3C010138 vs. NCBI nr
Match: gi|307135888|gb|ADN33753.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-30
Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 1 

Query: 28  MFNDDVPLGDSHDQDIPMMYSQGEHMSPDEIFGIRAGQASERKKCSSGSKRKRGSEHSET 87
           MFND VPLGDSHDQDIP MYSQG HM  +E+FGIRA QASER+ CSSGSKRK+GSEH E 
Sbjct: 1   MFNDGVPLGDSHDQDIPTMYSQGVHMLSNEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60

Query: 88  VEMMRSALEFGNDQLKAIANWLKEKRAIEVE 119
           VE+++SA+EFGNDQLKA  +W K+K + EVE
Sbjct: 61  VEVIKSAMEFGNDQLKAFEDWSKDKHSTEVE 91

[Close]
BLAST of MELO3C010138 vs. NCBI nr
Match: gi|659111565|ref|XP_008455793.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 7   KDRVTKARSETFADIGSNVPNMFNDDVPLGDSHDQDIPMMYSQGEHMSPDEIFGIRAGQA 66
           KDR T ARSETF D+GSNVPNMFND +PLGDSHD+DIP MYSQG H+SPDE+FGIRAGQA
Sbjct: 87  KDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQA 146

Query: 67  SERKKCSSGSKRK 80
           SER+ CSSGSKRK
Sbjct: 147 SERRNCSSGSKRK 159

[Close]
BLAST of MELO3C010138 vs. NCBI nr
Match: gi|700211563|gb|KGN66659.1| (hypothetical protein Csa_1G654880 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-23
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 1 

Query: 6   IKDRVTKARSETFADIGSNVPNMFNDDVPLGDSHDQDIPMMYSQGEHMSPDEIFGIRAGQ 65
           IKD+ T+ R E F DI SNVPN FND VP GDSHD +I MMYSQG  MS DE+ G   GQ
Sbjct: 24  IKDQATEGRLEIFVDIKSNVPNQFNDGVPFGDSHDPNILMMYSQGMDMSSDEMLGTCVGQ 83

Query: 66  ASERKKCSSGSKRKRGSEHSETVEMMRSALEFGNDQLK 104
            SE +  S+G+KRK+G ++ E +E++R+A+EF ND LK
Sbjct: 84  TSEGRNTSNGNKRKQGGQYYEMMEVLRNAMEFANDPLK 121

The following BLAST results are available for this feature:
BLAST of MELO3C010138 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB1_CUCME1.6e-3072.53Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0M036_CUCSA1.9e-2357.14Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654880 PE=4 SV=1[more]
E5GCB5_CUCME2.3e-1647.57Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KFW0_CUCSA3.3e-1561.64Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1[more]
E5GBB2_CUCME1.8e-1345.10Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C010138 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082641|ref|XP_008441954.1|9.2e-4377.68PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|659113923|ref|XP_008456820.1|7.5e-3774.77PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo][more]
gi|307135888|gb|ADN33753.1|2.3e-3072.53hypothetical protein [Cucumis melo subsp. melo][more]
gi|659111565|ref|XP_008455793.1|1.1e-2782.19PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|700211563|gb|KGN66659.1|2.8e-2357.14hypothetical protein Csa_1G654880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010138T1MELO3C010138T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010138Cucumber (Gy14) v2cgybmeB040
MELO3C010138Cucumber (Chinese Long) v3cucmeB044
MELO3C010138Cucumber (Gy14) v1cgymeB651
MELO3C010138Cucurbita maxima (Rimu)cmameB072
MELO3C010138Cucurbita maxima (Rimu)cmameB107
MELO3C010138Cucurbita moschata (Rifu)cmomeB065
MELO3C010138Cucurbita moschata (Rifu)cmomeB099
MELO3C010138Wild cucumber (PI 183967)cpimeB044
MELO3C010138Cucumber (Chinese Long) v2cumeB043
MELO3C010138Watermelon (97103) v1mewmB270
MELO3C010138Bottle gourd (USVL1VR-Ls)lsimeB398