MELO3C010130 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010130
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionFimbrin-like protein 2
Locationchr2 : 13525901 .. 13526172 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGTTTAAAAATGTCATTTGTAAAAATGATGACCGATGATGCCCAAACTTTGCAGAAAGAGCGGTGCTTCCGGTTGTGGGTCAATAGTCTTGGCATAGCCACATATGTCAACAATGTCTTTGAGAATGTGAGAAACGGGTATTATTTTTTGTTTTACTTTAACTTATGAATCAACTGTATATTGTCCTTTTTTTTTACAAGCTTAAGATACGACGTCCATATTATAGATGGGTTCTTTTGGAAGTTCTTGACAAAGTTTTTCCTTGA

mRNA sequence

ATGGATAGTTTAAAAATGTCATTTGTAAAAATGATGACCGATGATGCCCAAACTTTGCAGAAAGAGCGGTGCTTCCGGTTGTGGGTCAATAGTCTTGGCATAGCCACATATGTCAACAATGTCTTTGAGAATGTGAGAAACGGATGGGTTCTTTTGGAAGTTCTTGACAAAGTTTTTCCTTGA

Coding sequence (CDS)

ATGGATAGTTTAAAAATGTCATTTGTAAAAATGATGACCGATGATGCCCAAACTTTGCAGAAAGAGCGGTGCTTCCGGTTGTGGGTCAATAGTCTTGGCATAGCCACATATGTCAACAATGTCTTTGAGAATGTGAGAAACGGATGGGTTCTTTTGGAAGTTCTTGACAAAGTTTTTCCTTGA

Protein sequence

MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP*
Homology
[Close]
BLAST of MELO3C010130 vs. Swiss-Prot
Match: FIMB5_ARATH (Fimbrin-5 OS=Arabidopsis thaliana GN=FIM5 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.3e-20
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1   MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 60
           +D  K SF +MMTDD +T ++ERCFRLW+NSLG ATYVNNVFE++RNGWVLLEVLDKV P
Sbjct: 374 VDDSKTSFAEMMTDDVETSREERCFRLWINSLGTATYVNNVFEDLRNGWVLLEVLDKVSP 433

[Close]
BLAST of MELO3C010130 vs. Swiss-Prot
Match: FIMB3_ARATH (Fimbrin-3 OS=Arabidopsis thaliana GN=FIM3 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-18
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 5   KMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 61
           + SF +MMT+D QT + ERC+RLW+NSLGI +YVNNVFE+VRNGW+LLEV+DKV+P
Sbjct: 379 RFSFAEMMTEDLQTCRDERCYRLWINSLGIESYVNNVFEDVRNGWILLEVVDKVYP 434

[Close]
BLAST of MELO3C010130 vs. Swiss-Prot
Match: FIMB1_ARATH (Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 5.2e-18
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1 

Query: 5   KMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 61
           K +F +MMT+D +T + ERC+RLW+NSLGI +YVNNVFE+VRNGW+LLEVLDKV P
Sbjct: 378 KYAFAEMMTEDVETCRDERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSP 433

[Close]
BLAST of MELO3C010130 vs. Swiss-Prot
Match: FIMB4_ARATH (Fimbrin-4 OS=Arabidopsis thaliana GN=FIM4 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-15
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 

Query: 6   MSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 61
           +S  +M+T+D +T ++ERCFR W+NSLG  TYV+NVFE+VRNGWVLLEVLDKV P
Sbjct: 375 ISVAEMVTEDEETSREERCFRHWMNSLGAVTYVDNVFEDVRNGWVLLEVLDKVSP 429

[Close]
BLAST of MELO3C010130 vs. Swiss-Prot
Match: FIMB2_ARATH (Fimbrin-2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.8e-11
Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1 

Query: 5   KMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 61
           ++SF++ + DD Q  ++E+ FR W+NS   + Y+NNVFE++R+GW+LL+ LDKV P
Sbjct: 380 QISFLENLADDIQISREEKAFRFWINSFDGSVYINNVFEDLRDGWILLQTLDKVSP 435

[Close]
BLAST of MELO3C010130 vs. TrEMBL
Match: A0A0A0K1W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037520 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.6e-21
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 1   MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 60
           +DS KMSF +MMTDDAQT ++ERCFRLW+NSLGIATYVNNVFE+VRNGWVLLEVLDKV P
Sbjct: 374 VDSSKMSFAEMMTDDAQTSREERCFRLWINSLGIATYVNNVFEDVRNGWVLLEVLDKVSP 433

[Close]
BLAST of MELO3C010130 vs. TrEMBL
Match: A0A0B2SPQ5_GLYSO (Fimbrin-like protein 2 OS=Glycine soja GN=glysoja_031200 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-20
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 1   MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 60
           +DS KMSF +MMTDDA+T ++ERCFRLW+NSLGIATYVNNVFE+VRNGWVLLEVLDKV P
Sbjct: 375 VDSQKMSFAEMMTDDAETSREERCFRLWINSLGIATYVNNVFEDVRNGWVLLEVLDKVSP 434

[Close]
BLAST of MELO3C010130 vs. TrEMBL
Match: V7BDG6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G287800g PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-20
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 1   MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 60
           +DS KMSF +MMTDDA+T ++ERCFRLW+NSLGIATYVNNVFE+VRNGWVLLEVLDKV P
Sbjct: 375 VDSQKMSFAEMMTDDAETSREERCFRLWINSLGIATYVNNVFEDVRNGWVLLEVLDKVSP 434

[Close]
BLAST of MELO3C010130 vs. TrEMBL
Match: I1M675_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G005200 PE=4 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-20
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 1   MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 60
           +DS KMSF +MMTDDA+T ++ERCFRLW+NSLGIATYVNNVFE+VRNGWVLLEVLDKV P
Sbjct: 394 VDSQKMSFAEMMTDDAETSREERCFRLWINSLGIATYVNNVFEDVRNGWVLLEVLDKVSP 453

[Close]
BLAST of MELO3C010130 vs. TrEMBL
Match: A0A072UFF9_MEDTR (Actin-binding calponin-like (CH) domain protein OS=Medicago truncatula GN=MTR_5g098130 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-20
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 1   MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 60
           +D+ KMSF +MMTDDAQT ++ERCFRLW+NSLGIATYVNNVFE+VRNGWVLLEVLDKV P
Sbjct: 374 VDTNKMSFAEMMTDDAQTSREERCFRLWINSLGIATYVNNVFEDVRNGWVLLEVLDKVSP 433

[Close]
BLAST of MELO3C010130 vs. TAIR10
Match: AT5G35700.1 (AT5G35700.1 fimbrin-like protein 2)

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-21
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1   MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 60
           +D  K SF +MMTDD +T ++ERCFRLW+NSLG ATYVNNVFE++RNGWVLLEVLDKV P
Sbjct: 374 VDDSKTSFAEMMTDDVETSREERCFRLWINSLGTATYVNNVFEDLRNGWVLLEVLDKVSP 433

[Close]
BLAST of MELO3C010130 vs. TAIR10
Match: AT5G55400.1 (AT5G55400.1 Actin binding Calponin homology (CH) domain-containing protein)

HSP 1 Score: 93.2 bits (230), Expect = 5.9e-20
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 

Query: 5   KMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 61
           + SF +MMT+D QT + ERC+RLW+NSLGI +YVNNVFE+VRNGW+LLEV+DKV+P
Sbjct: 379 RFSFAEMMTEDLQTCRDERCYRLWINSLGIESYVNNVFEDVRNGWILLEVVDKVYP 434

[Close]
BLAST of MELO3C010130 vs. TAIR10
Match: AT4G26700.1 (AT4G26700.1 fimbrin 1)

HSP 1 Score: 90.9 bits (224), Expect = 2.9e-19
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1 

Query: 5   KMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 61
           K +F +MMT+D +T + ERC+RLW+NSLGI +YVNNVFE+VRNGW+LLEVLDKV P
Sbjct: 378 KYAFAEMMTEDVETCRDERCYRLWINSLGIDSYVNNVFEDVRNGWILLEVLDKVSP 433

[Close]
BLAST of MELO3C010130 vs. TAIR10
Match: AT2G04750.1 (AT2G04750.1 Actin binding Calponin homology (CH) domain-containing protein)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-17
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 

Query: 6   MSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 61
           +S  +M+T+D +T ++ERCFR W+NSLG  TYV+NVFE+VRNGWVLLEVLDKV P
Sbjct: 375 ISVAEMVTEDEETSREERCFRHWMNSLGAVTYVDNVFEDVRNGWVLLEVLDKVSP 429

[Close]
BLAST of MELO3C010130 vs. TAIR10
Match: AT5G48460.1 (AT5G48460.1 Actin binding Calponin homology (CH) domain-containing protein)

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-12
Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1 

Query: 5   KMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 61
           ++SF++ + DD Q  ++E+ FR W+NS   + Y+NNVFE++R+GW+LL+ LDKV P
Sbjct: 380 QISFLENLADDIQISREEKAFRFWINSFDGSVYINNVFEDLRDGWILLQTLDKVSP 435

[Close]
BLAST of MELO3C010130 vs. NCBI nr
Match: gi|449453575|ref|XP_004144532.1| (PREDICTED: fimbrin-5 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 6.6e-21
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 1   MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 60
           +DS KMSF +MMTDDAQT ++ERCFRLW+NSLGIATYVNNVFE+VRNGWVLLEVLDKV P
Sbjct: 374 VDSSKMSFAEMMTDDAQTSREERCFRLWINSLGIATYVNNVFEDVRNGWVLLEVLDKVSP 433

[Close]
BLAST of MELO3C010130 vs. NCBI nr
Match: gi|659110975|ref|XP_008455508.1| (PREDICTED: fimbrin-like protein 2 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 6.6e-21
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 1   MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 60
           +DS KMSF +MMTDDAQT ++ERCFRLW+NSLGIATYVNNVFE+VRNGWVLLEVLDKV P
Sbjct: 374 VDSSKMSFAEMMTDDAQTSREERCFRLWINSLGIATYVNNVFEDVRNGWVLLEVLDKVSP 433

[Close]
BLAST of MELO3C010130 vs. NCBI nr
Match: gi|593567597|ref|XP_007142522.1| (hypothetical protein PHAVU_008G287800g [Phaseolus vulgaris])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-20
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 1   MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 60
           +DS KMSF +MMTDDA+T ++ERCFRLW+NSLGIATYVNNVFE+VRNGWVLLEVLDKV P
Sbjct: 375 VDSQKMSFAEMMTDDAETSREERCFRLWINSLGIATYVNNVFEDVRNGWVLLEVLDKVSP 434

[Close]
BLAST of MELO3C010130 vs. NCBI nr
Match: gi|734433659|gb|KHN46900.1| (Fimbrin-like protein 2 [Glycine soja])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-20
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 1   MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 60
           +DS KMSF +MMTDDA+T ++ERCFRLW+NSLGIATYVNNVFE+VRNGWVLLEVLDKV P
Sbjct: 375 VDSQKMSFAEMMTDDAETSREERCFRLWINSLGIATYVNNVFEDVRNGWVLLEVLDKVSP 434

[Close]
BLAST of MELO3C010130 vs. NCBI nr
Match: gi|571506057|ref|XP_003545629.2| (PREDICTED: fimbrin-5-like [Glycine max])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-20
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 

Query: 1   MDSLKMSFVKMMTDDAQTLQKERCFRLWVNSLGIATYVNNVFENVRNGWVLLEVLDKVFP 60
           +DS KMSF +MMTDDA+T ++ERCFRLW+NSLGIATYVNNVFE+VRNGWVLLEVLDKV P
Sbjct: 394 VDSQKMSFAEMMTDDAETSREERCFRLWINSLGIATYVNNVFEDVRNGWVLLEVLDKVSP 453

The following BLAST results are available for this feature:
BLAST of MELO3C010130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FIMB5_ARATH3.3e-2073.33Fimbrin-5 OS=Arabidopsis thaliana GN=FIM5 PE=1 SV=1[more]
FIMB3_ARATH1.1e-1869.64Fimbrin-3 OS=Arabidopsis thaliana GN=FIM3 PE=3 SV=1[more]
FIMB1_ARATH5.2e-1869.64Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2[more]
FIMB4_ARATH1.1e-1567.27Fimbrin-4 OS=Arabidopsis thaliana GN=FIM4 PE=3 SV=1[more]
FIMB2_ARATH2.8e-1148.21Fimbrin-2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1[more]
BLAST of MELO3C010130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1W9_CUCSA4.6e-2183.33Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037520 PE=4 SV=1[more]
A0A0B2SPQ5_GLYSO1.0e-2081.67Fimbrin-like protein 2 OS=Glycine soja GN=glysoja_031200 PE=4 SV=1[more]
V7BDG6_PHAVU1.0e-2081.67Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G287800g PE=4 SV=1[more]
I1M675_SOYBN1.0e-2081.67Uncharacterized protein OS=Glycine max GN=GLYMA_14G005200 PE=4 SV=2[more]
A0A072UFF9_MEDTR1.3e-2081.67Actin-binding calponin-like (CH) domain protein OS=Medicago truncatula GN=MTR_5g... [more]
BLAST of MELO3C010130 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G35700.11.8e-2173.33 fimbrin-like protein 2[more]
AT5G55400.15.9e-2069.64 Actin binding Calponin homology (CH) domain-containing protein[more]
AT4G26700.12.9e-1969.64 fimbrin 1[more]
AT2G04750.16.1e-1767.27 Actin binding Calponin homology (CH) domain-containing protein[more]
AT5G48460.11.6e-1248.21 Actin binding Calponin homology (CH) domain-containing protein[more]
BLAST of MELO3C010130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453575|ref|XP_004144532.1|6.6e-2183.33PREDICTED: fimbrin-5 [Cucumis sativus][more]
gi|659110975|ref|XP_008455508.1|6.6e-2183.33PREDICTED: fimbrin-like protein 2 [Cucumis melo][more]
gi|593567597|ref|XP_007142522.1|1.5e-2081.67hypothetical protein PHAVU_008G287800g [Phaseolus vulgaris][more]
gi|734433659|gb|KHN46900.1|1.5e-2081.67Fimbrin-like protein 2 [Glycine soja][more]
gi|571506057|ref|XP_003545629.2|1.5e-2081.67PREDICTED: fimbrin-5-like [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001715CH-domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003779 actin binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010130T1MELO3C010130T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001715Calponin homology domainGENE3DG3DSA:1.10.418.10coord: 12..60
score: 1.
IPR001715Calponin homology domainPROFILEPS50021CHcoord: 19..60
score: 8
IPR001715Calponin homology domainunknownSSF47576Calponin-homology domain, CH-domaincoord: 7..59
score: 3.27
NoneNo IPR availablePANTHERPTHR19961FIMBRIN/PLASTINcoord: 1..60
score: 3.6
NoneNo IPR availablePANTHERPTHR19961:SF37FIMBRIN-1-RELATEDcoord: 1..60
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010130Bottle gourd (USVL1VR-Ls)lsimeB398
MELO3C010130Cucumber (Gy14) v2cgybmeB040
MELO3C010130Cucumber (Chinese Long) v3cucmeB044
MELO3C010130Watermelon (97103) v2mewmbB244
MELO3C010130Wax gourdmewgoB316
MELO3C010130Cucumber (Gy14) v1cgymeB651
MELO3C010130Cucurbita maxima (Rimu)cmameB072
MELO3C010130Cucurbita maxima (Rimu)cmameB107
MELO3C010130Cucurbita moschata (Rifu)cmomeB065
MELO3C010130Cucurbita moschata (Rifu)cmomeB099
MELO3C010130Wild cucumber (PI 183967)cpimeB044
MELO3C010130Cucumber (Chinese Long) v2cumeB043
MELO3C010130Watermelon (Charleston Gray)mewcgB239
MELO3C010130Watermelon (97103) v1mewmB270