MELO3C010129.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010129.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Pentatricopeptide repeat-containing family protein
Location	chr02 : 14233659 .. 14235620 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTATACATTGACCGTTCAAAATTATATGGTAACAGTTAATGGTCAGCATGAATGTTCCAAACAAGAGTATGCTAGTACTGGTATCGGCCAATGCTTGCTGGAAAAAGAAAAACTGTCTTCTTTACACTTAAATTGTTTGTGCAAGTCTAGTTGCATTAGTTCATATAGCTGTCATTGGAGTACAACGCTTGGTTTTGGAAGAAAACAACGGGTTTTACATTTTAAAGGATTGCAGAGGAGTGTATGTATTGATAGAGTTGATAATACTTACGAAGATGAATTGGTGTTGAATGGCCATGAGATAAAGGTTGAAAGGAATTTTGCTGAGAAAATGACTAAAAAGAGGATCAGTTCTCATAATGGTTCATCGTTGTATCTGGATGGACCCTTTGTTGGAAATGATGAACAAACCAACAATGAGATTCTACAAAAGTTCTGCAACAAGGGGAAGTTGATGGAAGCATCTAGGTTAGTTGATATTATGGCTAGTCGAAACCAGATTCCAGATTTCCATTGTTGCGTAAACTTGATTCGTGGGTTTGTAAAGATCGACCGAATAGATAAAGCTGTACAAGCCCTGAAAATCATGGTGATGTCTGGTGGTGTTCCAGATGTTATTACGTACAACATGGTGATTGGTGGTTTATGCAAGCAAGGACATTTGGAATCTGCCATTGAGCTCTTGGACGACATGAGTTTGAGTGGTTGCCCCCCAGATGTTATTACATATAATGCAGTAATCCGCCACATGTTTGACAATGGATGTTTTGATCAGGCTATTGAATTTTGGAAGGAACAGCTCAGAAAAGGAACTCCTCCTTATTTAATTACTTATACAATCCTCATTGAGCTAGTCTGGAAGCACCGTGGAACAGTTCGTGCTATTGAAGTATTGGAAGAAATGGCTAATGAGGGTTGTTATCCTGATCTTGTCACATACAATTCCTTGATCAACTTAACCTGCAAACAGGGAAAATTTGAAGATACAGCTTTAGTTATTGATAATCTTCTTTTCCATGGAATGGTACCCGATGCTGTGACTTACAACACCCTTCTCCATTCACTTTCAAGGCGTGGGCGTTGGGATGAAGTTGATGAAATCTTAAAAATCATGAGTATTAGTTTGCAGCCTCCAACAGTTGTCACGTACAATGTCTTGATTAATGGTCTATGTAAAAATGGACTCTTAGATAGTGCCATAAACTTTCTCAATCAAATGTTTTCCAACAATTGTTTGCCTGACATTATAACGTACAACACTCTACTTGGTGCTCTTAGTAAGGAAGGTATGGTAGATGAGGCTTTTCAATTACTTCACCTTTTAATTGGCTCGGCCTGCTCTCCTGGCTTAATTTCTTACAATACTGTGCTTGATGGGTTATCTAAAAAGGGGTACATGGATAAAGCAATGAGTTTATACAGTCAAATGATGGAAAATGGGATCATGCCAGATGATATCACCCATCGTTCTATAATTTGGGGGTTTTGTAGATCAAACAAATTTGTAGAAGCTGTGGAGATATTGAAGGGGATTCTCAAGGGAGGACACAAAGTGAATAGTAGTTCTTACAGATTTCTAGTTCATGAACTATGCATAAATAAGAAGGTGGATCTTGCAATACAAGTTCTGGAAATGATGTTATCAAGTCAATGTAAACCCAATGAGACAATTTATTCTACTATAATCAACAGCATAGCATCTTCCGGTTTAAAGGAACAGGCTGATGAGTTACGCCAGAAGTTGATAGAATTGAAGGTTTTAGGTAAGAAAGCAGTTTAGAAGGAAGATTTTTTTTTTTTCCAAGGGGAAAATTTATACCTCATCAACTGCTACTTGAGATTTAGGCAATAGTTCCTTGGGGAAGTTGTACAGTATGGTTTAAGTTCTTCAAAGGTGAATCCTTGAATCTTACTTCCTTCTACGGAAAATACCCTTTTGTGTTTCGATAAAAAGCTC

mRNA sequence

ATGGCGTATACATTGACCGTTCAAAATTATATGGTAACAGTTAATGGTCAGCATGAATGTTCCAAACAAGAGTATGCTAGTACTGGTATCGGCCAATGCTTGCTGGAAAAAGAAAAACTGTCTTCTTTACACTTAAATTGTTTGTGCAAGTCTAGTTGCATTAGTTCATATAGCTGTCATTGGAGTACAACGCTTGGTTTTGGAAGAAAACAACGGGTTTTACATTTTAAAGGATTGCAGAGGAGTGTATGTATTGATAGAGTTGATAATACTTACGAAGATGAATTGGTGTTGAATGGCCATGAGATAAAGGTTGAAAGGAATTTTGCTGAGAAAATGACTAAAAAGAGGATCAGTTCTCATAATGGTTCATCGTTGTATCTGGATGGACCCTTTGTTGGAAATGATGAACAAACCAACAATGAGATTCTACAAAAGTTCTGCAACAAGGGGAAGTTGATGGAAGCATCTAGGTTAGTTGATATTATGGCTAGTCGAAACCAGATTCCAGATTTCCATTGTTGCGTAAACTTGATTCGTGGGTTTGTAAAGATCGACCGAATAGATAAAGCTGTACAAGCCCTGAAAATCATGGTGATGTCTGGTGGTGTTCCAGATGTTATTACGTACAACATGGTGATTGGTGGTTTATGCAAGCAAGGACATTTGGAATCTGCCATTGAGCTCTTGGACGACATGAGTTTGAGTGGTTGCCCCCCAGATGTTATTACATATAATGCAGTAATCCGCCACATGTTTGACAATGGATGTTTTGATCAGGCTATTGAATTTTGGAAGGAACAGCTCAGAAAAGGAACTCCTCCTTATTTAATTACTTATACAATCCTCATTGAGCTAGTCTGGAAGCACCGTGGAACAGTTCGTGCTATTGAAGGGATTCTCAAGGGAGGACACAAAGTGAATAGTAGTTCTTACAGATTTCTAGTTCATGAACTATGCATAAATAAGAAGGTGGATCTTGCAATACAAGTTCTGGAAATGATGTTATCAAGTCAATGTAAACCCAATGAGACAATTTATTCTACTATAATCAACAGCATAGCATCTTCCGGTTTAAAGGAACAGGCTGATGAGTTACGCCAGAAGTTGATAGAATTGAAGGTTTTAGGTAAGAAAGCAGTTTAGAAGGAAGATTTTTTTTTTTTCCAAGGGGAAAATTTATACCTCATCAACTGCTACTTGAGATTTAGGCAATAGTTCCTTGGGGAAGTTGTACAGTATGGTTTAAGTTCTTCAAAGGTGAATCCTTGAATCTTACTTCCTTCTACGGAAAATACCCTTTTGTGTTTCGATAAAAAGCTC

Coding sequence (CDS)

ATGGCGTATACATTGACCGTTCAAAATTATATGGTAACAGTTAATGGTCAGCATGAATGTTCCAAACAAGAGTATGCTAGTACTGGTATCGGCCAATGCTTGCTGGAAAAAGAAAAACTGTCTTCTTTACACTTAAATTGTTTGTGCAAGTCTAGTTGCATTAGTTCATATAGCTGTCATTGGAGTACAACGCTTGGTTTTGGAAGAAAACAACGGGTTTTACATTTTAAAGGATTGCAGAGGAGTGTATGTATTGATAGAGTTGATAATACTTACGAAGATGAATTGGTGTTGAATGGCCATGAGATAAAGGTTGAAAGGAATTTTGCTGAGAAAATGACTAAAAAGAGGATCAGTTCTCATAATGGTTCATCGTTGTATCTGGATGGACCCTTTGTTGGAAATGATGAACAAACCAACAATGAGATTCTACAAAAGTTCTGCAACAAGGGGAAGTTGATGGAAGCATCTAGGTTAGTTGATATTATGGCTAGTCGAAACCAGATTCCAGATTTCCATTGTTGCGTAAACTTGATTCGTGGGTTTGTAAAGATCGACCGAATAGATAAAGCTGTACAAGCCCTGAAAATCATGGTGATGTCTGGTGGTGTTCCAGATGTTATTACGTACAACATGGTGATTGGTGGTTTATGCAAGCAAGGACATTTGGAATCTGCCATTGAGCTCTTGGACGACATGAGTTTGAGTGGTTGCCCCCCAGATGTTATTACATATAATGCAGTAATCCGCCACATGTTTGACAATGGATGTTTTGATCAGGCTATTGAATTTTGGAAGGAACAGCTCAGAAAAGGAACTCCTCCTTATTTAATTACTTATACAATCCTCATTGAGCTAGTCTGGAAGCACCGTGGAACAGTTCGTGCTATTGAAGGGATTCTCAAGGGAGGACACAAAGTGAATAGTAGTTCTTACAGATTTCTAGTTCATGAACTATGCATAAATAAGAAGGTGGATCTTGCAATACAAGTTCTGGAAATGATGTTATCAAGTCAATGTAAACCCAATGAGACAATTTATTCTACTATAATCAACAGCATAGCATCTTCCGGTTTAAAGGAACAGGCTGATGAGTTACGCCAGAAGTTGATAGAATTGAAGGTTTTAGGTAAGAAAGCAGTTTAG

Protein sequence

MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCHWSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISSHNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIRGFVKIDRIDKAVQALKIMVMSGGVPDVITYNMVIGGLCKQGHLESAIELLDDMSLSGCPPDVITYNAVIRHMFDNGCFDQAIEFWKEQLRKGTPPYLITYTILIELVWKHRGTVRAIEGILKGGHKVNSSSYRFLVHELCINKKVDLAIQVLEMMLSSQCKPNETIYSTIINSIASSGLKEQADELRQKLIELKVLGKKAV

Homology

[Close]

BLAST of MELO3C010129.2 vs. NCBI nr
Match: XP_008443760.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Cucumis melo])

HSP 1 Score: 375.6 bits (963), Expect = 2.1e-100
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH 60
           MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH
Sbjct: 1   MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH 60

Query: 61  WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS 120
           WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS
Sbjct: 61  WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS 120

Query: 121 HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR 180
           HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR
Sbjct: 121 HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

HSP 2 Score: 48.1 bits (113), Expect = 7.5e-02
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 357 SGLKEQADELRQKLIELKVLGKKAV 382
           SGLKEQADELRQKLIELKVLGKKAV
Sbjct: 570 SGLKEQADELRQKLIELKVLGKKAV 594

[Close]

BLAST of MELO3C010129.2 vs. NCBI nr
Match: XP_004142592.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Cucumis sativus] >KGN66733.1 hypothetical protein Csa_1G665940 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 9.3e-85
Identity = 157/181 (86.74%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH 60
           MAY LTVQNYMVTVNG HECSKQEYASTGIGQCLLEKEK SSLHL  LCK+S   SYSCH
Sbjct: 1   MAYILTVQNYMVTVNGLHECSKQEYASTGIGQCLLEKEKPSSLHLYGLCKTSFNGSYSCH 60

Query: 61  WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS 120
           WSTTLG GRKQRVLHFKGLQRSVCIDRVD+TYEDEL LNGHEIKVERNF+EK+TKKR  S
Sbjct: 61  WSTTLGLGRKQRVLHFKGLQRSVCIDRVDDTYEDELALNGHEIKVERNFSEKLTKKRFGS 120

Query: 121 HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR 180
           HN SSLYLDGPFVGNDE+TNN ILQKFC KGKLMEASR+VDIMASRNQIPDF CC+N+IR
Sbjct: 121 HNCSSLYLDGPFVGNDEETNNVILQKFCYKGKLMEASRVVDIMASRNQIPDFECCINMIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

[Close]

BLAST of MELO3C010129.2 vs. NCBI nr
Match: XP_022960808.1 (pentatricopeptide repeat-containing protein At1g08610 [Cucurbita moschata] >XP_022960809.1 pentatricopeptide repeat-containing protein At1g08610 [Cucurbita moschata] >XP_022960810.1 pentatricopeptide repeat-containing protein At1g08610 [Cucurbita moschata])

HSP 1 Score: 307.4 bits (786), Expect = 6.9e-80
Identity = 146/181 (80.66%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH 60
           MAYTLTVQNYMVT+NG HEC KQEY STG GQCL+EKEK  S+HL+CLCKSSC SSYS H
Sbjct: 1   MAYTLTVQNYMVTLNGLHECYKQEYVSTGSGQCLMEKEKPFSVHLSCLCKSSCSSSYSYH 60

Query: 61  WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS 120
           WSTT GFGRKQRVL  KG Q SVCIDRVD+ Y+DEL LNGHEI+V RNF EKMTKKR+SS
Sbjct: 61  WSTTPGFGRKQRVLRCKGAQSSVCIDRVDDAYKDELTLNGHEIEVGRNFVEKMTKKRLSS 120

Query: 121 HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR 180
           HNGSS+Y+DGPF+GNDE+TNN ILQKFC  GKLME+SRLVDIMA RNQIPDFHCCV LIR
Sbjct: 121 HNGSSVYMDGPFIGNDEETNNMILQKFCTMGKLMESSRLVDIMACRNQIPDFHCCVKLIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

[Close]

BLAST of MELO3C010129.2 vs. NCBI nr
Match: XP_022988054.1 (pentatricopeptide repeat-containing protein At1g08610 [Cucurbita maxima] >XP_022988055.1 pentatricopeptide repeat-containing protein At1g08610 [Cucurbita maxima] >XP_022988056.1 pentatricopeptide repeat-containing protein At1g08610 [Cucurbita maxima])

HSP 1 Score: 303.5 bits (776), Expect = 1.0e-78
Identity = 144/181 (79.56%), Postives = 158/181 (87.29%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH 60
           MAYTLTVQNYMVT+NG HEC KQEY STG GQCL+EKEK  S+HL+CLCKSSC SSYS H
Sbjct: 1   MAYTLTVQNYMVTLNGLHECFKQEYVSTGSGQCLMEKEKPFSVHLSCLCKSSCSSSYSYH 60

Query: 61  WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS 120
           WS T G GRKQRVL  KG+Q SVCIDRVD+ Y+DEL LNGHEI+V RNFAEKMTK R+SS
Sbjct: 61  WSATPGLGRKQRVLRCKGVQSSVCIDRVDDAYKDELTLNGHEIEVGRNFAEKMTKNRLSS 120

Query: 121 HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR 180
           HNGSS+Y+DGPF+GNDE+TNN ILQKFC  GKLME+SRLVDIMA RNQIPDFHCCV LIR
Sbjct: 121 HNGSSVYMDGPFIGNDEETNNMILQKFCTMGKLMESSRLVDIMACRNQIPDFHCCVKLIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

[Close]

BLAST of MELO3C010129.2 vs. NCBI nr
Match: XP_023516968.1 (pentatricopeptide repeat-containing protein At1g08610 [Cucurbita pepo subsp. pepo] >XP_023516969.1 pentatricopeptide repeat-containing protein At1g08610 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.1 bits (767), Expect = 1.1e-77
Identity = 142/181 (78.45%), Postives = 157/181 (86.74%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH 60
           MAYTLTVQNYMVT+NG HEC KQEY STG GQCL+EKEK  S+HL+CLCKSSC SSYS H
Sbjct: 1   MAYTLTVQNYMVTLNGIHECFKQEYVSTGSGQCLMEKEKPFSVHLSCLCKSSCSSSYSYH 60

Query: 61  WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS 120
           WS T G GRKQRVL  KG+Q SVCIDRVD+ Y+DEL LNGHE +V RNF EK+TKKR+SS
Sbjct: 61  WSATPGLGRKQRVLRCKGVQSSVCIDRVDDAYKDELTLNGHETEVGRNFVEKVTKKRLSS 120

Query: 121 HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR 180
           HNGSS+Y+DGPF+GNDE+TNN ILQKFC  GKLME+SRLVDIMA RNQIPDFHCCV LIR
Sbjct: 121 HNGSSVYMDGPFIGNDEETNNMILQKFCTMGKLMESSRLVDIMACRNQIPDFHCCVKLIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

[Close]

BLAST of MELO3C010129.2 vs. TAIR10
Match: AT1G08610.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-16
Identity = 50/130 (38.46%), Postives = 64/130 (49.23%), Query Frame = 0


Query: 52  SCISSYSCHWSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAE 111
           SC    S  W   +G  +K       GL  SVCID V++  E       H   V  N   
Sbjct: 27  SCRKFSSLDWKQEIGL-KKDVFFRCHGLLSSVCIDNVNDHAERSSEF--HHYGVGTNL-- 86

Query: 112 KMTKKRISSHNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPD 171
              + R+       L  DGP   NDE+TNNEIL   C+ GKL +A +LV++MA  NQ+P 
Sbjct: 87  ---RARVKPMKQFGLSSDGPITENDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPH 146

Query: 172 FHCCVNLIRG 182
           F  C NL+RG
Sbjct: 147 FPSCSNLVRG 148

[Close]

BLAST of MELO3C010129.2 vs. Swiss-Prot
Match: sp|Q9FRS4|PPR22_ARATH (Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana OX=3702 GN=At1g08610 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.3e-15
Identity = 50/130 (38.46%), Postives = 64/130 (49.23%), Query Frame = 0


Query: 52  SCISSYSCHWSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAE 111
           SC    S  W   +G  +K       GL  SVCID V++  E       H   V  N   
Sbjct: 27  SCRKFSSLDWKQEIGL-KKDVFFRCHGLLSSVCIDNVNDHAERSSEF--HHYGVGTNL-- 86

Query: 112 KMTKKRISSHNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPD 171
              + R+       L  DGP   NDE+TNNEIL   C+ GKL +A +LV++MA  NQ+P 
Sbjct: 87  ---RARVKPMKQFGLSSDGPITENDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPH 146

Query: 172 FHCCVNLIRG 182
           F  C NL+RG
Sbjct: 147 FPSCSNLVRG 148

[Close]

BLAST of MELO3C010129.2 vs. TrEMBL
Match: tr|A0A1S3B8B2|A0A1S3B8B2_CUCME (pentatricopeptide repeat-containing protein At1g08610 OS=Cucumis melo OX=3656 GN=LOC103487276 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH 60
           MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH
Sbjct: 1   MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH 60

Query: 61  WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS 120
           WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS
Sbjct: 61  WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS 120

Query: 121 HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR 180
           HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR
Sbjct: 121 HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

HSP 2 Score: 48.1 bits (113), Expect = 5.0e-02
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 357 SGLKEQADELRQKLIELKVLGKKAV 382
           SGLKEQADELRQKLIELKVLGKKAV
Sbjct: 570 SGLKEQADELRQKLIELKVLGKKAV 594

[Close]

BLAST of MELO3C010129.2 vs. TrEMBL
Match: tr|A0A0A0LY76|A0A0A0LY76_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G665940 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.2e-85
Identity = 157/181 (86.74%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH 60
           MAY LTVQNYMVTVNG HECSKQEYASTGIGQCLLEKEK SSLHL  LCK+S   SYSCH
Sbjct: 1   MAYILTVQNYMVTVNGLHECSKQEYASTGIGQCLLEKEKPSSLHLYGLCKTSFNGSYSCH 60

Query: 61  WSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRISS 120
           WSTTLG GRKQRVLHFKGLQRSVCIDRVD+TYEDEL LNGHEIKVERNF+EK+TKKR  S
Sbjct: 61  WSTTLGLGRKQRVLHFKGLQRSVCIDRVDDTYEDELALNGHEIKVERNFSEKLTKKRFGS 120

Query: 121 HNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNLIR 180
           HN SSLYLDGPFVGNDE+TNN ILQKFC KGKLMEASR+VDIMASRNQIPDF CC+N+IR
Sbjct: 121 HNCSSLYLDGPFVGNDEETNNVILQKFCYKGKLMEASRVVDIMASRNQIPDFECCINMIR 180

Query: 181 G 182
           G
Sbjct: 181 G 181

[Close]

BLAST of MELO3C010129.2 vs. TrEMBL
Match: tr|A0A2N9GYK9|A0A2N9GYK9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32714 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.7e-31
Identity = 85/182 (46.70%), Postives = 109/182 (59.89%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTV---NGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSY 60
           M YT+  Q+Y+  V   +G H CSKQE  S+    C + K +  +  LNCL K +  S +
Sbjct: 1   MGYTIIQQSYLAQVRSLHGLHGCSKQEGHSSVSCHCSVIKSR--AFRLNCLSKGNHKSQF 60

Query: 61  SCHWSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEI-KVERNFAEKMTKK 120
              W    G GR   +L  + LQRSVCI R +   +DE     +    VERNF + M K 
Sbjct: 61  CLQWKGGFGSGRNACLLQCRVLQRSVCIGRDNEIEQDEWSSKNYGTGVVERNFRQLMKK- 120

Query: 121 RISSHNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCV 179
              + N S LYLDGP VGNDE+TNN+ILQ FC++G+L++ASRLVDIMA RNQIP F  C 
Sbjct: 121 ---TSNSSLLYLDGPLVGNDEETNNDILQSFCSQGRLVDASRLVDIMARRNQIPHFPSCT 176

[Close]

BLAST of MELO3C010129.2 vs. TrEMBL
Match: tr|A0A2I4FP41|A0A2I4FP41_9ROSI (pentatricopeptide repeat-containing protein At1g08610 OS=Juglans regia OX=51240 GN=LOC109000820 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 81/183 (44.26%), Postives = 111/183 (60.66%), Query Frame = 0


Query: 1   MAYTLTVQNYMV---TVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSY 60
           M Y ++ QN+MV   +++G + CSK E   +G   C++ K     L LNC+ K    +  
Sbjct: 1   MGYCISQQNHMVVFSSLHGLNGCSKLEGHHSGTCHCVIIKP--PGLRLNCISKCDHQTQS 60

Query: 61  SCHWSTTLGFGRKQRVLHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKR 120
             HW    G  R       +GLQRS CI+R +   +DE     + + V+RNF + +  K+
Sbjct: 61  CLHWRGVHGARRNVHFSQCRGLQRSFCIERDNEIDQDEWSSEDYRMIVDRNFRQHINSKK 120

Query: 121 ISSHNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVN 180
            SS   SSLYLDGPFV N+E+TNN ILQ FC++G+L++ASRL+DIMA RNQIP F  C N
Sbjct: 121 PSS---SSLYLDGPFVENNEETNNGILQNFCSQGRLLDASRLIDIMARRNQIPHFPSCTN 178

[Close]

BLAST of MELO3C010129.2 vs. TrEMBL
Match: tr|A0A2P6R5I7|A0A2P6R5I7_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0449641 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 79/183 (43.17%), Postives = 106/183 (57.92%), Query Frame = 0


Query: 1   MAYTLTVQNYMVTVNGQHECSKQEYASTGIGQCLLEKEKLSSLHLNCLCKSSCISSYSCH 60
           MA+T+  QN  V     H C+K+    +GIG   + +          L K S  S     
Sbjct: 1   MAHTIAQQNSTVDFRCLHVCAKEVSPCSGIGHLPISR---------FLSKYSRESQCCLR 60

Query: 61  WSTTLGFGRKQRV--LHFKGLQRSVCIDRVDNTYEDELVLNGHEIKVERNFAEKMTKKRI 120
           W    G G K  V  L  +GL+RSVCIDRV     DE  ++  ++ +E+   E++ +KR 
Sbjct: 61  WG---GVGSKSDVQYLQHRGLRRSVCIDRVHEVDLDEWSIDTDKMGIEKKSGEELYEKR- 120

Query: 121 SSHNGSSLYLDGPFVGNDEQTNNEILQKFCNKGKLMEASRLVDIMASRNQIPDFHCCVNL 180
             H  S++ LDG FVGN E  NN++L+ FC++GKL+ ASRL+DIMA RNQIPDFHCC NL
Sbjct: 121 -PHRSSTVDLDGRFVGNGEDKNNDVLRNFCSRGKLLLASRLIDIMARRNQIPDFHCCKNL 169

Query: 181 IRG 182
           IRG
Sbjct: 181 IRG 169

The following BLAST results are available for this feature:

BLAST of MELO3C010129.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443760.1	2.1e-100	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Cucumis melo]	[more]
XP_004142592.1	9.3e-85	86.74	PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Cucumis sativu...	[more]
XP_022960808.1	6.9e-80	80.66	pentatricopeptide repeat-containing protein At1g08610 [Cucurbita moschata] >XP_0...	[more]
XP_022988054.1	1.0e-78	79.56	pentatricopeptide repeat-containing protein At1g08610 [Cucurbita maxima] >XP_022...	[more]
XP_023516968.1	1.1e-77	78.45	pentatricopeptide repeat-containing protein At1g08610 [Cucurbita pepo subsp. pep...	[more]

BLAST of MELO3C010129.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08610.1	2.9e-16	38.46	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of MELO3C010129.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FRS4\|PPR22_ARATH	5.3e-15	38.46	Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana OX...	[more]

BLAST of MELO3C010129.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B8B2\|A0A1S3B8B2_CUCME	1.4e-100	100.00	pentatricopeptide repeat-containing protein At1g08610 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LY76\|A0A0A0LY76_CUCSA	6.2e-85	86.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G665940 PE=4 SV=1	[more]
tr\|A0A2N9GYK9\|A0A2N9GYK9_FAGSY	6.7e-31	46.70	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32714 PE=4 SV=1	[more]
tr\|A0A2I4FP41\|A0A2I4FP41_9ROSI	1.1e-30	44.26	pentatricopeptide repeat-containing protein At1g08610 OS=Juglans regia OX=51240 ...	[more]
tr\|A0A2P6R5I7\|A0A2P6R5I7_ROSCH	1.5e-27	43.17	Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010129.2.1	MELO3C010129.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 356..376
None	No IPR available	PANTHER	PTHR24015:SF533	SUBFAMILY NOT NAMED	coord: 306..377
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 306..377
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 23..302
None	No IPR available	PANTHER	PTHR24015:SF533	SUBFAMILY NOT NAMED	coord: 23..302
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 205..250 e-value: 2.1E-16 score: 59.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 311..344 e-value: 4.3E-4 score: 18.3 coord: 243..275 e-value: 6.2E-5 score: 20.9 coord: 208..242 e-value: 6.8E-11 score: 39.6 coord: 175..207 e-value: 0.0018 score: 16.3
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 304..354 e-value: 1.7E-4 score: 21.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 177..202 e-value: 0.36 score: 11.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 241..275 score: 11.016
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 206..240 score: 13.439
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 171..205 score: 8.309
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 136..170 score: 8.67
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 308..342 score: 9.821
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 343..377 score: 7.059
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 200..294 e-value: 4.1E-24 score: 86.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 295..375 e-value: 2.4E-11 score: 45.4 coord: 96..199 e-value: 1.4E-6 score: 29.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010129.2	Silver-seed gourd	carmedB0906
MELO3C010129.2	Cucumber (Chinese Long) v3	cucmedB041
MELO3C010129.2	Watermelon (97103) v2	medwmbB229
MELO3C010129.2	Wax gourd	medwgoB310
MELO3C010129.2	Cucumber (Gy14) v2	cgybmedB034
MELO3C010129.2	Cucumber (Gy14) v1	cgymedB646
MELO3C010129.2	Cucurbita maxima (Rimu)	cmamedB075
MELO3C010129.2	Cucurbita maxima (Rimu)	cmamedB114
MELO3C010129.2	Cucurbita moschata (Rifu)	cmomedB068
MELO3C010129.2	Cucurbita moschata (Rifu)	cmomedB107
MELO3C010129.2	Wild cucumber (PI 183967)	cpimedB038
MELO3C010129.2	Cucumber (Chinese Long) v2	cumedB035
MELO3C010129.2	Bottle gourd (USVL1VR-Ls)	lsimedB420
MELO3C010129.2	Watermelon (Charleston Gray)	medwcgB230
MELO3C010129.2	Watermelon (97103) v1	medwmB254
MELO3C010129.2	Watermelon (97103) v1	medwmB261