MELO3C010128 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010128
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPentatricopeptide repeat-containing protein, putative
Locationchr2 : 13423399 .. 13423708 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCATCGGAATTTCTCCCTCAGAGCCTCCATTTCACCAATCCATTATCGAAGCCAACAATTCCCCAATCACATTCAGATTCCATCCCCACTCGCAGATTTTCAAACAAAACCTACCTCAGAAATGTCACTTCTTCTGCTGAATCTAGACAACCCCATTTCCCTAATCTCGATAACAGAGATGCCCATTTGATGAAACTCCTTAACAGGTCCTGCAGAGCTGGGAAGCACAACGAGTCCCTCTATTTTCTCGAAAGCGTGGTGAGTAAAGGCTTCAAACCTGATGTTGTGCTCTGTACTAAACTCA

mRNA sequence

ATGTTTTCATCGGAATTTCTCCCTCAGAGCCTCCATTTCACCAATCCATTATCGAAGCCAACAATTCCCCAATCACATTCAGATTCCATCCCCACTCGCAGATTTTCAAACAAAACCTACCTCAGAAATGTCACTTCTTCTGCTGAATCTAGACAACCCCATTTCCCTAATCTCGATAACAGAGATGCCCATTTGATGAAACTCCTTAACAGGTCCTGCAGAGCTGGGAAGCACAACGAGTCCCTCTATTTTCTCGAAAGCGTGGTGAGTAAAGGCTTCAAACCTGATGTTGTGCTCTGTACTAAACTCA

Coding sequence (CDS)

ATGTTTTCATCGGAATTTCTCCCTCAGAGCCTCCATTTCACCAATCCATTATCGAAGCCAACAATTCCCCAATCACATTCAGATTCCATCCCCACTCGCAGATTTTCAAACAAAACCTACCTCAGAAATGTCACTTCTTCTGCTGAATCTAGACAACCCCATTTCCCTAATCTCGATAACAGAGATGCCCATTTGATGAAACTCCTTAACAGGTCCTGCAGAGCTGGGAAGCACAACGAGTCCCTCTATTTTCTCGAAAGCGTGGTGAGTAAAGGCTTCAAACCTGATGTTGTGCTCTGTACTAAACTCA

Protein sequence

MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL
Homology
[Close]
BLAST of MELO3C010128 vs. Swiss-Prot
Match: PP213_ARATH (Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.5e-12
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 1 

Query: 11  LHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDNRDAHLMKLLN 70
           L F+N  S P      S S    R    T   + T   E RQ H  +L  RD  ++K+ +
Sbjct: 40  LTFSN--SNPNNDNGRSFSSSGARNLQTTTTTDATLPTERRQQHSQSLGFRDTQMLKIFH 99

Query: 71  RSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 104
           RSCR+G + ESL+ LE++V KG+ PDV+LCTKL
Sbjct: 100 RSCRSGNYIESLHLLETMVRKGYNPDVILCTKL 130


HSP 2 Score: 29.3 bits (64), Expect = 3.2e+01
Identity = 12/31 (38.71%), Postives = 19/31 (61.29%), Query Frame = 1 

Query: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVV 99
           L+   CR G+ + ++ FLE+++S G  PD+V
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIV 404

[Close]
BLAST of MELO3C010128 vs. TrEMBL
Match: A0A0A0M3C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G666460 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-48
Identity = 97/103 (94.17%), Postives = 99/103 (96.12%), Query Frame = 1 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60
           MFSSEFLPQSLHFTNPL+KPTIPQS SDSIP  RFSNKT+LRNVTSSAE RQPHFPNLDN
Sbjct: 1   MFSSEFLPQSLHFTNPLAKPTIPQSRSDSIPACRFSNKTHLRNVTSSAEFRQPHFPNLDN 60

Query: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 104
           RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL
Sbjct: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 103

[Close]
BLAST of MELO3C010128 vs. TrEMBL
Match: B9S7L1_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0609420 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.0e-21
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRR--FSNKTYLRN---VTSSAESRQPHF 60
           +FS+EFLP S+ FT    KPT    HS  +   R   ++   +RN   V  SAE+RQ H 
Sbjct: 3   LFSTEFLPHSISFTTQPLKPTSNSLHSTIVSCIRPELNDANKVRNPQKVRVSAETRQTHV 62

Query: 61  PNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 104
            + D ++ HLMKLLNRSCRAGK+NESLYFLE +V KG+ PDV+LCTKL
Sbjct: 63  LSFDFKEVHLMKLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKL 110

[Close]
BLAST of MELO3C010128 vs. TrEMBL
Match: A0A067JIP8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23550 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-18
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 1 

Query: 1   MFSSEFLPQSLHFTNPL-SKPTIPQSHSDSIPTRR--FSNKTYLRN---VTSSAESRQPH 60
           +FS EF+P+S+ FT     KPT    HS  +       ++   LRN   ++ SAE+R  H
Sbjct: 3   LFSIEFIPRSITFTTQQRQKPTSNSFHSTVVGCLHPNLNDTDNLRNPPNLSVSAETRPTH 62

Query: 61  FPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 104
             +LD ++ HL+KLLNRSC+AGK+NESLYFLE +V KG+KPDV++CTKL
Sbjct: 63  VLSLDFKEIHLIKLLNRSCKAGKYNESLYFLECMVDKGYKPDVIMCTKL 111

[Close]
BLAST of MELO3C010128 vs. TrEMBL
Match: F6H610_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00690 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-17
Identity = 57/109 (52.29%), Postives = 70/109 (64.22%), Query Frame = 1 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRN------VTSSAESRQPH 60
           ++S++F P+   F NP  KPT   SH  SI T R  N     N      V  SAE+R  H
Sbjct: 3   IYSTDFFPRCPPF-NPQLKPT-SHSHHTSIVTCRNPNPNDGFNSRNAPKVGVSAEARPAH 62

Query: 61  FPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 104
             + D R+ HLMKLLNRSC+AGK NESLYFLE +V+KG+ PDV+LCTKL
Sbjct: 63  LQSYDFRETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKL 109

[Close]
BLAST of MELO3C010128 vs. TrEMBL
Match: A5B1M4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025967 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.8e-17
Identity = 56/109 (51.38%), Postives = 69/109 (63.30%), Query Frame = 1 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRN------VTSSAESRQPH 60
           ++S++F P    F+ P  KPT   SH  SI T R  N     N      V  SAE+R  H
Sbjct: 13  IYSTDFFPHCPPFS-PQLKPT-SHSHHTSIVTCRNPNPNDGYNSRNSPKVGVSAEARPAH 72

Query: 61  FPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 104
             + D R+ HLMKLLNRSC+AGK NESLYFLE +V+KG+ PDV+LCTKL
Sbjct: 73  LQSYDFRETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKL 119

[Close]
BLAST of MELO3C010128 vs. TAIR10
Match: AT3G04760.1 (AT3G04760.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 5.3e-13
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 1 

Query: 11  LHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDNRDAHLMKLLN 70
           L F+N  S P      S S    R    T   + T   E RQ H  +L  RD  ++K+ +
Sbjct: 40  LTFSN--SNPNNDNGRSFSSSGARNLQTTTTTDATLPTERRQQHSQSLGFRDTQMLKIFH 99

Query: 71  RSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 104
           RSCR+G + ESL+ LE++V KG+ PDV+LCTKL
Sbjct: 100 RSCRSGNYIESLHLLETMVRKGYNPDVILCTKL 130


HSP 2 Score: 29.3 bits (64), Expect = 1.8e+00
Identity = 12/31 (38.71%), Postives = 19/31 (61.29%), Query Frame = 1 

Query: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVV 99
           L+   CR G+ + ++ FLE+++S G  PD+V
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIV 404

[Close]
BLAST of MELO3C010128 vs. NCBI nr
Match: gi|659086091|ref|XP_008443759.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 2.5e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60
           MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN
Sbjct: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60

Query: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 104
           RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL
Sbjct: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 103

[Close]
BLAST of MELO3C010128 vs. NCBI nr
Match: gi|449449675|ref|XP_004142590.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 2.8e-48
Identity = 97/103 (94.17%), Postives = 99/103 (96.12%), Query Frame = 1 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRRFSNKTYLRNVTSSAESRQPHFPNLDN 60
           MFSSEFLPQSLHFTNPL+KPTIPQS SDSIP  RFSNKT+LRNVTSSAE RQPHFPNLDN
Sbjct: 1   MFSSEFLPQSLHFTNPLAKPTIPQSRSDSIPACRFSNKTHLRNVTSSAEFRQPHFPNLDN 60

Query: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 104
           RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL
Sbjct: 61  RDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 103

[Close]
BLAST of MELO3C010128 vs. NCBI nr
Match: gi|223538784|gb|EEF40384.1| (pentatricopeptide repeat-containing protein, putative [Ricinus communis])

HSP 1 Score: 108.2 bits (269), Expect = 8.5e-21
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRR--FSNKTYLRN---VTSSAESRQPHF 60
           +FS+EFLP S+ FT    KPT    HS  +   R   ++   +RN   V  SAE+RQ H 
Sbjct: 3   LFSTEFLPHSISFTTQPLKPTSNSLHSTIVSCIRPELNDANKVRNPQKVRVSAETRQTHV 62

Query: 61  PNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 104
            + D ++ HLMKLLNRSCRAGK+NESLYFLE +V KG+ PDV+LCTKL
Sbjct: 63  LSFDFKEVHLMKLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKL 110

[Close]
BLAST of MELO3C010128 vs. NCBI nr
Match: gi|1000959094|ref|XP_002521980.2| (PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Ricinus communis])

HSP 1 Score: 108.2 bits (269), Expect = 8.5e-21
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1 

Query: 1   MFSSEFLPQSLHFTNPLSKPTIPQSHSDSIPTRR--FSNKTYLRN---VTSSAESRQPHF 60
           +FS+EFLP S+ FT    KPT    HS  +   R   ++   +RN   V  SAE+RQ H 
Sbjct: 3   LFSTEFLPHSISFTTQPLKPTSNSLHSTIVSCIRPELNDANKVRNPQKVRVSAETRQTHV 62

Query: 61  PNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 104
            + D ++ HLMKLLNRSCRAGK+NESLYFLE +V KG+ PDV+LCTKL
Sbjct: 63  LSFDFKEVHLMKLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKL 110

[Close]
BLAST of MELO3C010128 vs. NCBI nr
Match: gi|643708801|gb|KDP23717.1| (hypothetical protein JCGZ_23550 [Jatropha curcas])

HSP 1 Score: 99.0 bits (245), Expect = 5.2e-18
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 1 

Query: 1   MFSSEFLPQSLHFTNPL-SKPTIPQSHSDSIPTRR--FSNKTYLRN---VTSSAESRQPH 60
           +FS EF+P+S+ FT     KPT    HS  +       ++   LRN   ++ SAE+R  H
Sbjct: 3   LFSIEFIPRSITFTTQQRQKPTSNSFHSTVVGCLHPNLNDTDNLRNPPNLSVSAETRPTH 62

Query: 61  FPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKL 104
             +LD ++ HL+KLLNRSC+AGK+NESLYFLE +V KG+KPDV++CTKL
Sbjct: 63  VLSLDFKEIHLIKLLNRSCKAGKYNESLYFLECMVDKGYKPDVIMCTKL 111

The following BLAST results are available for this feature:
BLAST of MELO3C010128 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP213_ARATH9.5e-1241.94Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidop... [more]
BLAST of MELO3C010128 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M3C6_CUCSA2.0e-4894.17Uncharacterized protein OS=Cucumis sativus GN=Csa_1G666460 PE=4 SV=1[more]
B9S7L1_RICCO6.0e-2153.70Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO... [more]
A0A067JIP8_JATCU3.6e-1849.54Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23550 PE=4 SV=1[more]
F6H610_VITVI1.8e-1752.29Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00690 PE=4 SV=... [more]
A5B1M4_VITVI6.8e-1751.38Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025967 PE=4 SV=1[more]
BLAST of MELO3C010128 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04760.15.3e-1341.94 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of MELO3C010128 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086091|ref|XP_008443759.1|2.5e-52100.00PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic ... [more]
gi|449449675|ref|XP_004142590.1|2.8e-4894.17PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic ... [more]
gi|223538784|gb|EEF40384.1|8.5e-2153.70pentatricopeptide repeat-containing protein, putative [Ricinus communis][more]
gi|1000959094|ref|XP_002521980.2|8.5e-2153.70PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic ... [more]
gi|643708801|gb|KDP23717.1|5.2e-1849.54hypothetical protein JCGZ_23550 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010128T1MELO3C010128T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 68..97
score: 0.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 2..103
score: 3.7
NoneNo IPR availablePANTHERPTHR24015:SF572SUBFAMILY NOT NAMEDcoord: 2..103
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C010128Bhi02G001054Wax gourdmewgoB316
MELO3C010128CSPI01G33000Wild cucumber (PI 183967)cpimeB044
MELO3C010128Cucsa.027550Cucumber (Gy14) v1cgymeB651
MELO3C010128CsGy1G031790Cucumber (Gy14) v2cgybmeB040
MELO3C010128CsaV3_1G045110Cucumber (Chinese Long) v3cucmeB044
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010128Cucurbita maxima (Rimu)cmameB072
MELO3C010128Cucurbita maxima (Rimu)cmameB107
MELO3C010128Cucurbita moschata (Rifu)cmomeB065
MELO3C010128Cucurbita moschata (Rifu)cmomeB099
MELO3C010128Cucumber (Chinese Long) v2cumeB043
MELO3C010128Watermelon (Charleston Gray)mewcgB239
MELO3C010128Bottle gourd (USVL1VR-Ls)lsimeB398
MELO3C010128Watermelon (97103) v2mewmbB244