MELO3C010122 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010122
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	30S ribosomal protein S21
Location	chr2 : 13359195 .. 13359392 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATCGAGCAGCAAGATAATGAGAATTTGATCAATGCATGGAGGAGATTTAAAAGGATGATCAAGAGATGCCCTCACCACAACATCCCTAGATGCATTTTGATGGAGCAGCTTTATTTTGGGCTGAGCAAGGATACCCAACAATCTATTGACGTTGTGTTGATAGGTGGGATACTGAGACCATTCTACCACTAG

mRNA sequence

ATGGCCATCGAGCAGCAAGATAATGAGAATTTGATCAATGCATGGAGGAGATTTAAAAGGATGATCAAGAGATGCCCTCACCACAACATCCCTAGATGCATTTTGATGGAGCAGCTTTATTTTGGGCTGAGCAAGGATACCCAACAATCTATTGACGTTGTGTTGATAGGTGGGATACTGAGACCATTCTACCACTAG

Coding sequence (CDS)

ATGGCCATCGAGCAGCAAGATAATGAGAATTTGATCAATGCATGGAGGAGATTTAAAAGGATGATCAAGAGATGCCCTCACCACAACATCCCTAGATGCATTTTGATGGAGCAGCTTTATTTTGGGCTGAGCAAGGATACCCAACAATCTATTGACGTTGTGTTGATAGGTGGGATACTGAGACCATTCTACCACTAG

Protein sequence

MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGILRPFYH*

Homology

[Close]

BLAST of MELO3C010122 vs. TrEMBL
Match: A0A0A0K6F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.0e-13
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 1  MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL 60
          M  +Q+D EN+ + W RFKR++K CP H IP C+ ME  YFGLSKDT Q ++ + +GG+L
Sbjct: 1  MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60

Query: 61 RPFYH 66
          R  Y+
Sbjct: 61 RSSYN 65

[Close]

BLAST of MELO3C010122 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 1   MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL 60
           M+ +Q ++E+  +AW RFK ++++CPHH IP CI ME  Y GL+  ++  +D    G IL
Sbjct: 149 MSFQQLEDESTSDAWERFKELLRKCPHHGIPHCIQMETFYNGLNAASRMVLDASANGAIL 208

Query: 61  RPFYH 66
              Y+
Sbjct: 209 SKSYN 213

[Close]

BLAST of MELO3C010122 vs. TrEMBL
Match: A0A0A0L0Y4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131150 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-07
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 21 MIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGILR 62
          M+K C HHNI  C+++EQ YFGLS+DTQQ +D V IGG+LR
Sbjct: 1  MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLR 41

[Close]

BLAST of MELO3C010122 vs. TrEMBL
Match: U5CU15_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00007080 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-06
Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 1


Query: 1  MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL 60
          M+ +Q ++E   +AW RFK ++++CPHH IP CI +E  Y GL+  ++    +VL   ++
Sbjct: 1  MSFQQLEDETTSDAWERFKELLRKCPHHGIPHCIQLETFYNGLNAASR----MVLDASLM 60

Query: 61 RPFY 65
           PF+
Sbjct: 61 EPFF 60

[Close]

BLAST of MELO3C010122 vs. TrEMBL
Match: W9RRR5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012321 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.9e-06
Identity = 24/64 (37.50%), Postives = 38/64 (59.38%), Query Frame = 1


Query: 2  AIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGILR 61
          +  Q+D E++  AW RFK ++++CP H IP  I ME  Y GL++ T+  +D    G +L 
Sbjct: 24 SFHQEDGESVYAAWERFKELLRKCPLHGIPHWIQMETFYNGLNEQTRVMVDAAANGALLA 83

Query: 62 PFYH 66
            Y+
Sbjct: 84 KSYN 87

[Close]

BLAST of MELO3C010122 vs. NCBI nr
Match: gi|700189251|gb|KGN44484.1| (hypothetical protein Csa_7G307410 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 7.2e-13
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 1  MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL 60
          M  +Q+D EN+ + W RFKR++K CP H IP C+ ME  YFGLSKDT Q ++ + +GG+L
Sbjct: 1  MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60

Query: 61 RPFYH 66
          R  Y+
Sbjct: 61 RSSYN 65

[Close]

BLAST of MELO3C010122 vs. NCBI nr
Match: gi|548830333|gb|ERM93404.1| (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1


Query: 1   MAIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGIL 60
           M+ +Q ++E+  +AW RFK ++++CPHH IP CI ME  Y GL+  ++  +D    G IL
Sbjct: 149 MSFQQLEDESTSDAWERFKELLRKCPHHGIPHCIQMETFYNGLNAASRMVLDASANGAIL 208

Query: 61  RPFYH 66
              Y+
Sbjct: 209 SKSYN 213

[Close]

BLAST of MELO3C010122 vs. NCBI nr
Match: gi|985472737|ref|XP_015381576.1| (PREDICTED: uncharacterized protein LOC107174869 [Citrus sinensis])

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-07
Identity = 25/64 (39.06%), Postives = 40/64 (62.50%), Query Frame = 1


Query: 2   AIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGILR 61
           +  Q ++E+L +AW RFK ++++CPHH IP CI +E  Y GL+  T+  +D    G +L 
Sbjct: 97  SFHQLEDESLCDAWERFKELLRKCPHHGIPCCIQLETFYNGLNPSTRLMVDTSANGALLS 156

Query: 62  PFYH 66
             Y+
Sbjct: 157 KSYN 160

[Close]

BLAST of MELO3C010122 vs. NCBI nr
Match: gi|700198643|gb|KGN53801.1| (hypothetical protein Csa_4G131150 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 5.9e-07
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1


Query: 21 MIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGILR 62
          M+K C HHNI  C+++EQ YFGLS+DTQQ +D V IGG+LR
Sbjct: 1  MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLR 41

[Close]

BLAST of MELO3C010122 vs. NCBI nr
Match: gi|985471059|ref|XP_015381143.1| (PREDICTED: uncharacterized protein LOC107174616 [Citrus sinensis])

HSP 1 Score: 61.6 bits (148), Expect = 5.9e-07
Identity = 25/64 (39.06%), Postives = 41/64 (64.06%), Query Frame = 1


Query: 2  AIEQQDNENLINAWRRFKRMIKRCPHHNIPRCILMEQLYFGLSKDTQQSIDVVLIGGILR 61
          +  Q ++E+L +AW RFK +++RCP+H IP CI +E  Y GL++ T+  +D    G +L 
Sbjct: 18 SFHQLEDESLYDAWERFKELLRRCPYHGIPCCIQLETFYNGLNQSTRLMVDASANGALLS 77

Query: 62 PFYH 66
            Y+
Sbjct: 78 KSYN 81

The following BLAST results are available for this feature:

BLAST of MELO3C010122 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6F9_CUCSA	5.0e-13	50.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G307410 PE=4 SV=1	[more]
U5CUI2_AMBTC	1.4e-07	40.00	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=...	[more]
A0A0A0L0Y4_CUCSA	4.1e-07	63.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131150 PE=4 SV=1	[more]
U5CU15_AMBTC	2.7e-06	37.50	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00007080 PE=4 SV=...	[more]
W9RRR5_9ROSA	5.9e-06	37.50	Uncharacterized protein OS=Morus notabilis GN=L484_012321 PE=4 SV=1	[more]

BLAST of MELO3C010122 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189251\|gb\|KGN44484.1\|	7.2e-13	50.77	hypothetical protein Csa_7G307410 [Cucumis sativus]	[more]
gi\|548830333\|gb\|ERM93404.1\|	2.0e-07	40.00	hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda]	[more]
gi\|985472737\|ref\|XP_015381576.1\|	4.5e-07	39.06	PREDICTED: uncharacterized protein LOC107174869 [Citrus sinensis]	[more]
gi\|700198643\|gb\|KGN53801.1\|	5.9e-07	63.41	hypothetical protein Csa_4G131150 [Cucumis sativus]	[more]
gi\|985471059\|ref\|XP_015381143.1\|	5.9e-07	39.06	PREDICTED: uncharacterized protein LOC107174616 [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010122T1	MELO3C010122T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010122	Cucumber (Gy14) v2	cgybmeB040
MELO3C010122	Cucumber (Gy14) v2	cgybmeB055
MELO3C010122	Cucumber (Chinese Long) v3	cucmeB044
MELO3C010122	Watermelon (97103) v2	mewmbB244
MELO3C010122	Wax gourd	mewgoB316
MELO3C010122	Cucumber (Gy14) v1	cgymeB650
MELO3C010122	Cucumber (Gy14) v1	cgymeB651
MELO3C010122	Cucurbita maxima (Rimu)	cmameB062
MELO3C010122	Cucurbita maxima (Rimu)	cmameB072
MELO3C010122	Cucurbita maxima (Rimu)	cmameB107
MELO3C010122	Cucurbita moschata (Rifu)	cmomeB055
MELO3C010122	Cucurbita moschata (Rifu)	cmomeB065
MELO3C010122	Cucurbita moschata (Rifu)	cmomeB099
MELO3C010122	Wild cucumber (PI 183967)	cpimeB044
MELO3C010122	Wild cucumber (PI 183967)	cpimeB062
MELO3C010122	Cucumber (Chinese Long) v2	cumeB043
MELO3C010122	Cucumber (Chinese Long) v2	cumeB062
MELO3C010122	Watermelon (Charleston Gray)	mewcgB239
MELO3C010122	Cucurbita pepo (Zucchini)	cpemeB339
MELO3C010122	Bottle gourd (USVL1VR-Ls)	lsimeB398