MELO3C010120 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010120
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr2 : 13328585 .. 13328914 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTTGTGAGTGTAGAGAATTCAACGAGCTTGTTAGCTTCATTTCAGGTTAGGTCTTCCCTAGTAGCTGAGATTGTTAGAATGCATTTAGAGCACAGTCAACTTCAGAAAGGGCTTGGAAAGTCCAAGCAAGGCCAAAAAGCCAAGTTTCAGTTGAGATTAGATGGAACCATAGTTAAGCAAGACAGACTATATGTTCCAAGTGTTAGAGAGTTGAAGGATGCTATCTTTAGAGAAGGTTACAGTTCAGTATATGCTCTACGTCCAGGCAGTACCAAGATGTATAGGACCATGAAGAAAACATACTACTGGCCTAGAATAAAGTGA

mRNA sequence

ATGACAGTTGTGAGTGTAGAGAATTCAACGAGCTTGTTAGCTTCATTTCAGGTTAGGTCTTCCCTAGTAGCTGAGATTGTTAGAATGCATTTAGAGCACAGTCAACTTCAGAAAGGGCTTGGAAAGTCCAAGCAAGGCCAAAAAGCCAAGTTTCAGTTGAGATTAGATGGAACCATAGTTAAGCAAGACAGACTATATGTTCCAAGTGTTAGAGAGTTGAAGGATGCTATCTTTAGAGAAGGTTACAGTTCAGTATATGCTCTACGTCCAGGCAGTACCAAGATGTATAGGACCATGAAGAAAACATACTACTGGCCTAGAATAAAGTGA

Coding sequence (CDS)

ATGACAGTTGTGAGTGTAGAGAATTCAACGAGCTTGTTAGCTTCATTTCAGGTTAGGTCTTCCCTAGTAGCTGAGATTGTTAGAATGCATTTAGAGCACAGTCAACTTCAGAAAGGGCTTGGAAAGTCCAAGCAAGGCCAAAAAGCCAAGTTTCAGTTGAGATTAGATGGAACCATAGTTAAGCAAGACAGACTATATGTTCCAAGTGTTAGAGAGTTGAAGGATGCTATCTTTAGAGAAGGTTACAGTTCAGTATATGCTCTACGTCCAGGCAGTACCAAGATGTATAGGACCATGAAGAAAACATACTACTGGCCTAGAATAAAGTGA

Protein sequence

MTVVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSVRELKDAIFREGYSSVYALRPGSTKMYRTMKKTYYWPRIK*

Homology

[Close]

BLAST of MELO3C010120 vs. TrEMBL
Match: A0A061FX26_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_044444 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-15
Identity = 44/99 (44.44%), Postives = 68/99 (68.69%), Query Frame = 1


Query: 11  SLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSV 70
           +LLASF VR S + +I  +     +L++ + K   G+ ++F+L  DGT++ +DR+ VP  
Sbjct: 273 TLLASFVVRPSFLDQIRELQKSDDELKQEVQKLHDGETSEFRLSDDGTLMFRDRICVPKD 332

Query: 71  RELKDAIFREGYSSVYALRPGSTKMYRTMKKTYYWPRIK 110
            +L+ AI  E +SSVYAL P STKMYRT+K++Y+WP +K
Sbjct: 333 DQLRQAILEEAHSSVYALHPRSTKMYRTIKESYWWPSMK 371

[Close]

BLAST of MELO3C010120 vs. TrEMBL
Match: A0A061G9E7_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028292 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-15
Identity = 44/99 (44.44%), Postives = 69/99 (69.70%), Query Frame = 1


Query: 11  SLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSV 70
           +LLASF VR SL+ +I  +      L++ + K + G+ ++F+L  DGT++ +DR+ VP  
Sbjct: 823 TLLASFVVRPSLLNQIRELQKFDDWLKQEVQKLQDGEASEFRLSDDGTLMLRDRICVPKD 882

Query: 71  RELKDAIFREGYSSVYALRPGSTKMYRTMKKTYYWPRIK 110
            +L+ AI  E +SS YAL PGSTKMY+T+K++Y+WP +K
Sbjct: 883 DQLRRAILEEAHSSAYALHPGSTKMYQTIKESYWWPGMK 921

[Close]

BLAST of MELO3C010120 vs. TrEMBL
Match: A0A061FB63_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_033423 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-15
Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = 1


Query: 11  SLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSV 70
           +LLASF VR SL+ +I  +      L++ + K + G+ ++F+L  DG  + +DR+ VP  
Sbjct: 539 TLLASFVVRPSLLNQIRELQKSDDWLKQEVQKLQDGEASEFRLNDDGIFMLRDRICVPKD 598

Query: 71  RELKDAIFREGYSSVYALRPGSTKMYRTMKKTYYWPRIK 110
            +L+ AI  E +SS YAL PGSTKMYRT+K++Y+WP +K
Sbjct: 599 DQLRRAILEEAHSSAYALHPGSTKMYRTIKESYWWPGMK 637

[Close]

BLAST of MELO3C010120 vs. TrEMBL
Match: A0A061E5E3_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 43/96 (44.79%), Postives = 66/96 (68.75%), Query Frame = 1


Query: 11   SLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSV 70
            +LLASF VR SL+ +I  +      L++ + K + G+ ++F+L  DGT++ +DR+ VP  
Sbjct: 1034 TLLASFVVRPSLLNQIRELQKSDDWLKQEVQKLQDGKASEFRLSDDGTLMLRDRICVPKD 1093

Query: 71   RELKDAIFREGYSSVYALRPGSTKMYRTMKKTYYWP 107
             +L+ AI  E + S YAL PGSTKMYRT+K++Y+WP
Sbjct: 1094 DQLRRAILEEAHYSAYALHPGSTKMYRTIKESYWWP 1129

[Close]

BLAST of MELO3C010120 vs. TrEMBL
Match: A0A061E6T4_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.5e-14
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 1


Query: 11   SLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSV 70
            SLLA+F VR SL+ +I  +     +L+K + K   G  ++F+   D  ++ +DR+ VP  
Sbjct: 1021 SLLANFIVRPSLLNQIKDIQRSDDELRKEIQKLTDGGVSEFRFGEDNVLMFKDRVCVPEG 1080

Query: 71   RELKDAIFREGYSSVYALRPGSTKMYRTMKKTYYWPRIK 110
             +L+ AI  E +SS YAL PGSTKMYRT+++ Y+WP +K
Sbjct: 1081 NQLRQAIMEEAHSSAYALHPGSTKMYRTIRENYWWPGMK 1119

[Close]

BLAST of MELO3C010120 vs. NCBI nr
Match: gi|659127634|ref|XP_008463805.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501860 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-19
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 1


Query: 3   VVSVENSTSLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQ 62
           V++ E+S SLLA FQVRSSLVAEIV   LE   LQK L K+KQG KA+F+LR D  IVKQ
Sbjct: 640 VMTAESSGSLLAQFQVRSSLVAEIVGRQLEDRNLQKMLAKAKQGPKAEFELRTDRAIVKQ 699

Query: 63  DRLYVPSVRELKDAIFREGYSSVYALRPGSTKM 96
            RL V ++ ELK AI  E ++S YA+ PGSTKM
Sbjct: 700 GRLCVLNISELKGAILEEAHNSAYAMHPGSTKM 732

[Close]

BLAST of MELO3C010120 vs. NCBI nr
Match: gi|590567558|ref|XP_007010549.1| (Uncharacterized protein TCM_044444 [Theobroma cacao])

HSP 1 Score: 90.1 bits (222), Expect = 2.6e-15
Identity = 44/99 (44.44%), Postives = 68/99 (68.69%), Query Frame = 1


Query: 11  SLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSV 70
           +LLASF VR S + +I  +     +L++ + K   G+ ++F+L  DGT++ +DR+ VP  
Sbjct: 273 TLLASFVVRPSFLDQIRELQKSDDELKQEVQKLHDGETSEFRLSDDGTLMFRDRICVPKD 332

Query: 71  RELKDAIFREGYSSVYALRPGSTKMYRTMKKTYYWPRIK 110
            +L+ AI  E +SSVYAL P STKMYRT+K++Y+WP +K
Sbjct: 333 DQLRQAILEEAHSSVYALHPRSTKMYRTIKESYWWPSMK 371

[Close]

BLAST of MELO3C010120 vs. NCBI nr
Match: gi|590613257|ref|XP_007022613.1| (Uncharacterized protein TCM_033423 [Theobroma cacao])

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-15
Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = 1


Query: 11  SLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSV 70
           +LLASF VR SL+ +I  +      L++ + K + G+ ++F+L  DG  + +DR+ VP  
Sbjct: 539 TLLASFVVRPSLLNQIRELQKSDDWLKQEVQKLQDGEASEFRLNDDGIFMLRDRICVPKD 598

Query: 71  RELKDAIFREGYSSVYALRPGSTKMYRTMKKTYYWPRIK 110
            +L+ AI  E +SS YAL PGSTKMYRT+K++Y+WP +K
Sbjct: 599 DQLRRAILEEAHSSAYALHPGSTKMYRTIKESYWWPGMK 637

[Close]

BLAST of MELO3C010120 vs. NCBI nr
Match: gi|590617810|ref|XP_007023888.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-15
Identity = 44/99 (44.44%), Postives = 69/99 (69.70%), Query Frame = 1


Query: 11  SLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSV 70
           +LLASF VR SL+ +I  +      L++ + K + G+ ++F+L  DGT++ +DR+ VP  
Sbjct: 823 TLLASFVVRPSLLNQIRELQKFDDWLKQEVQKLQDGEASEFRLSDDGTLMLRDRICVPKD 882

Query: 71  RELKDAIFREGYSSVYALRPGSTKMYRTMKKTYYWPRIK 110
            +L+ AI  E +SS YAL PGSTKMY+T+K++Y+WP +K
Sbjct: 883 DQLRRAILEEAHSSAYALHPGSTKMYQTIKESYWWPGMK 921

[Close]

BLAST of MELO3C010120 vs. NCBI nr
Match: gi|590693615|ref|XP_007044383.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 43/96 (44.79%), Postives = 66/96 (68.75%), Query Frame = 1


Query: 11   SLLASFQVRSSLVAEIVRMHLEHSQLQKGLGKSKQGQKAKFQLRLDGTIVKQDRLYVPSV 70
            +LLASF VR SL+ +I  +      L++ + K + G+ ++F+L  DGT++ +DR+ VP  
Sbjct: 1034 TLLASFVVRPSLLNQIRELQKSDDWLKQEVQKLQDGKASEFRLSDDGTLMLRDRICVPKD 1093

Query: 71   RELKDAIFREGYSSVYALRPGSTKMYRTMKKTYYWP 107
             +L+ AI  E + S YAL PGSTKMYRT+K++Y+WP
Sbjct: 1094 DQLRRAILEEAHYSAYALHPGSTKMYRTIKESYWWP 1129

The following BLAST results are available for this feature:

BLAST of MELO3C010120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061FX26_THECC	1.8e-15	44.44	Uncharacterized protein OS=Theobroma cacao GN=TCM_044444 PE=4 SV=1	[more]
A0A061G9E7_THECC	4.0e-15	44.44	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028292 PE=4 SV...	[more]
A0A061FB63_THECC	4.0e-15	44.44	Uncharacterized protein OS=Theobroma cacao GN=TCM_033423 PE=4 SV=1	[more]
A0A061E5E3_THECC	1.2e-14	44.79	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV...	[more]
A0A061E6T4_THECC	7.5e-14	42.42	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV...	[more]

BLAST of MELO3C010120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127634\|ref\|XP_008463805.1\|	1.3e-19	61.29	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501860 [Cucumis me...	[more]
gi\|590567558\|ref\|XP_007010549.1\|	2.6e-15	44.44	Uncharacterized protein TCM_044444 [Theobroma cacao]	[more]
gi\|590613257\|ref\|XP_007022613.1\|	5.7e-15	44.44	Uncharacterized protein TCM_033423 [Theobroma cacao]	[more]
gi\|590617810\|ref\|XP_007023888.1\|	5.7e-15	44.44	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590693615\|ref\|XP_007044383.1\|	1.7e-14	44.79	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010120T1	MELO3C010120T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010120	Silver-seed gourd	carmeB0899
MELO3C010120	Cucumber (Chinese Long) v3	cucmeB044
MELO3C010120	Watermelon (97103) v2	mewmbB244
MELO3C010120	Watermelon (97103) v2	mewmbB252
MELO3C010120	Wax gourd	mewgoB316
MELO3C010120	Cucumber (Gy14) v1	cgymeB650
MELO3C010120	Cucumber (Gy14) v1	cgymeB651
MELO3C010120	Cucurbita maxima (Rimu)	cmameB062
MELO3C010120	Cucurbita maxima (Rimu)	cmameB072
MELO3C010120	Cucurbita maxima (Rimu)	cmameB107
MELO3C010120	Cucurbita moschata (Rifu)	cmomeB055
MELO3C010120	Cucurbita moschata (Rifu)	cmomeB065
MELO3C010120	Cucurbita moschata (Rifu)	cmomeB099
MELO3C010120	Wild cucumber (PI 183967)	cpimeB044
MELO3C010120	Wild cucumber (PI 183967)	cpimeB062
MELO3C010120	Cucumber (Chinese Long) v2	cumeB043
MELO3C010120	Cucumber (Chinese Long) v2	cumeB062
MELO3C010120	Watermelon (Charleston Gray)	mewcgB239
MELO3C010120	Watermelon (97103) v1	mewmB268
MELO3C010120	Cucurbita pepo (Zucchini)	cpemeB339
MELO3C010120	Bottle gourd (USVL1VR-Ls)	lsimeB398
MELO3C010120	Cucumber (Gy14) v2	cgybmeB040
MELO3C010120	Cucumber (Gy14) v2	cgybmeB055