MELO3C010112 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010112
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Pentatricopeptide repeat-containing protein, putative
Location	chr2 : 13143911 .. 13145340 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAAACTCCTGCTCTCTCACGCTCACCTTCTCACACTTCCCTACAATCACCGTTCCTTTTCTCTCAACCATGGCCTCCTCCCCATTCGCTCAGTCCTCTCTGCTCCAGACAAGCGAGGTAGAAAGAAGCGGCAGTCTCGCCACCAACAACAATTGCAACTAAAGGACGATGATTCCACTTCACTTGAGAACTCCCTTCGTTTCACTTTCATGGAGGAACTCATGGACCGCGCTAGAAACCACGATCCACTTGGTGTTTCTGATGTCATTTACGATATGGTTGCTGCTGGATTGAGCCCTGGACCTCGCTCCTTCCATGGATTAGTTGTTTCTCATACTCTAAATGGCGATACTGAGGGAGCGGTGAGAACTCACAACCTCTCTCTCTCTCTCTCTAATTGTGTGTGTGTTTGTAAATTTGTTGGTAATGTTGTTCTTGTTTTTGGTGTGTTTTTAGGCAATGTAGTGGAATTGTATACGTGCAATTTAAGATCTAGTGCTTAAACTTATTCCCTATTCCTTCCTTTTTCGGTTATTGGATGTTTTGAAGTATAGGATCTTTAACCCTTGTTTTCTCTTTCCCGTTCGAAAAACTTAGCTTCTCGGTGTCTTAATTAGATGATGAAGTTTTCTCCTCTAATATGTCCTTCGCATGCTCACCTGGTTAACAGAAGGCAGGGATATGTATAACGTTGACTGTATGGAAGTCTCTGGTCTATTTGTATATATGCGTGTGGGTGTCTATTCTTTTATTGAATCAGGTGTATCTGCACTCTTGCTCCATCCATTGTCATGTAGACGTGTGGGATACATTTTTGTCCTAACAAAGTAAAACTTGTTTTGGTCCCAATGTAATTTTTGTTTACAAATTCCCGGATAGATATGTATTTTTCTAAATCTTCTGGGTATGATGAATGTAGATGCAGTCTCTGAGAAGGGAATTAAGTTCTGGACTTCGTCCTCTCCATGAAACTTTTGTTGCATTAGTTCGGTTATTTGGTTCCAAGGGTCTTGCTAATAGAGGCTTAGAAATCCTTGCTGCCATGGAGAGATTGAATTATGACATCCGTCAAGCATGGCTCATTCTTACGGGTAAGCCTGAACTTCCTGTTGAGAATGCTCCTAATAGATACTTTTTAGTTATGTTTATGTTTATGTCTTAGTTGCATGAATTATTTTGACTAGAGGAACTCGTAAGGAACAAATATTTGGAAGATGCCAATAAAGTGTTCTTAAAGGGTGCCAAAGCGGGTCTCAGAGCCACAGACAAAATTTATGATCTTATGATTGAGGAAGATTGTAAAGCTGGAGATCATTCAAATGCCTTAGAGATCTCATATGAAATGGAGGCTGCTGGGCGGATGGCAACGACCTTCCATTTCAATTGCCTTCTTAGTGTCCAGGTGATGTTTCTTACTATTGGATAA

mRNA sequence

ATGTCCAAACTCCTGCTCTCTCACGCTCACCTTCTCACACTTCCCTACAATCACCGTTCCTTTTCTCTCAACCATGGCCTCCTCCCCATTCGCTCAGTCCTCTCTGCTCCAGACAAGCGAGGTAGAAAGAAGCGGCAGTCTCGCCACCAACAACAATTGCAACTAAAGGACGATGATTCCACTTCACTTGAGAACTCCCTTCGTTTCACTTTCATGGAGGAACTCATGGACCGCGCTAGAAACCACGATCCACTTGGTGTTTCTGATGTCATTTACGATATGGTTGCTGCTGGATTGAGCCCTGGACCTCGCTCCTTCCATGGATTAGTTGTTTCTCATACTCTAAATGGCGATACTGAGGGAGCGATGCAGTCTCTGAGAAGGGAATTAAGTTCTGGACTTCGTCCTCTCCATGAAACTTTTGTTGCATTAGTTCGGTTATTTGGTTCCAAGGGTCTTGCTAATAGAGGCTTAGAAATCCTTGCTGCCATGGAGAGATTGAATTATGACATCCGTCAAGCATGGCTCATTCTTACGGAGGAACTCGTAAGGAACAAATATTTGGAAGATGCCAATAAAGTGTTCTTAAAGGGTGCCAAAGCGGGTCTCAGAGCCACAGACAAAATTTATGATCTTATGATTGAGGAAGATTGTAAAGCTGGAGATCATTCAAATGCCTTAGAGATCTCATATGAAATGGAGGCTGCTGGGCGGATGGCAACGACCTTCCATTTCAATTGCCTTCTTAGTGTCCAGGTGATGTTTCTTACTATTGGATAA

Coding sequence (CDS)

ATGTCCAAACTCCTGCTCTCTCACGCTCACCTTCTCACACTTCCCTACAATCACCGTTCCTTTTCTCTCAACCATGGCCTCCTCCCCATTCGCTCAGTCCTCTCTGCTCCAGACAAGCGAGGTAGAAAGAAGCGGCAGTCTCGCCACCAACAACAATTGCAACTAAAGGACGATGATTCCACTTCACTTGAGAACTCCCTTCGTTTCACTTTCATGGAGGAACTCATGGACCGCGCTAGAAACCACGATCCACTTGGTGTTTCTGATGTCATTTACGATATGGTTGCTGCTGGATTGAGCCCTGGACCTCGCTCCTTCCATGGATTAGTTGTTTCTCATACTCTAAATGGCGATACTGAGGGAGCGATGCAGTCTCTGAGAAGGGAATTAAGTTCTGGACTTCGTCCTCTCCATGAAACTTTTGTTGCATTAGTTCGGTTATTTGGTTCCAAGGGTCTTGCTAATAGAGGCTTAGAAATCCTTGCTGCCATGGAGAGATTGAATTATGACATCCGTCAAGCATGGCTCATTCTTACGGAGGAACTCGTAAGGAACAAATATTTGGAAGATGCCAATAAAGTGTTCTTAAAGGGTGCCAAAGCGGGTCTCAGAGCCACAGACAAAATTTATGATCTTATGATTGAGGAAGATTGTAAAGCTGGAGATCATTCAAATGCCTTAGAGATCTCATATGAAATGGAGGCTGCTGGGCGGATGGCAACGACCTTCCATTTCAATTGCCTTCTTAGTGTCCAGGTGATGTTTCTTACTATTGGATAA

Protein sequence

MSKLLLSHAHLLTLPYNHRSFSLNHGLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKDDDSTSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTEGAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLILTEELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQVMFLTIG*

Homology

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BLAST of MELO3C010112 vs. Swiss-Prot
Match: PPR26_ARATH (Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-08
Identity = 46/189 (24.34%), Postives = 84/189 (44.44%), Query Frame = 1


Query: 63  LENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTEGA 122
           + N + FT +  +   +RN +   + +    M++ GL P    ++ LV     NGD   A
Sbjct: 342 IPNDVIFTTL--IHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAA 401

Query: 123 MQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDI-RQAWLILTEE 182
              +   +  GLRP   T+  L+  F   G     LEI   M++   ++ R  +  L   
Sbjct: 402 RNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCG 461

Query: 183 LVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMAT 242
           + +   + DA +   +  +AG++  D  Y +M++  CK GD     ++  EM++ G + +
Sbjct: 462 MCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPS 521

Query: 243 TFHFNCLLS 251
              +N LL+
Sbjct: 522 VVTYNVLLN 528

HSP 2 Score: 42.4 bits (98), Expect = 9.1e-03
Identity = 43/181 (23.76%), Postives = 68/181 (37.57%), Query Frame = 1


Query: 69  FTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTEGAMQSLRR 128
           FT+   +    + +   G   +  +M   GL P    F  L+  H+ NG+ +   +S ++
Sbjct: 311 FTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQK 370

Query: 129 ELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLILTEELVRNKYL 188
            LS GL+P    +  LV  F   G      +++AA   ++  IR+               
Sbjct: 371 MLSKGLQPDIVLYNTLVNGFCKNG------DLVAARNIVDGMIRR--------------- 430

Query: 189 EDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCL 248
                        GLR     Y  +I+  C+ GD   ALEI  EM+  G       F+ L
Sbjct: 431 -------------GLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSAL 457

Query: 249 L 250
           +
Sbjct: 491 V 457

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BLAST of MELO3C010112 vs. Swiss-Prot
Match: PP437_ARATH (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-06
Identity = 42/158 (26.58%), Postives = 67/158 (42.41%), Query Frame = 1


Query: 93  DMVAAGLSPGPRSFHGLVVSHTLNGDTEGAMQSLRRELSSGLRPLHETFVALVRLFGSKG 152
           +MV  GL      ++ L+  H   GD   A   +   ++  L P   T+ +L+  + SKG
Sbjct: 427 EMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKG 486

Query: 153 LANRGLEILAAMERLNYDIR-QAWLILTEELVRNKYLEDANKVFLKGAKAGLRATDKIYD 212
             N+ L +   M           +  L   L R   + DA K+F + A+  ++     Y+
Sbjct: 487 KINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYN 546

Query: 213 LMIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLL 250
           +MIE  C+ GD S A E   EM   G +  T+ +  L+
Sbjct: 547 VMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLI 584

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BLAST of MELO3C010112 vs. TrEMBL
Match: I1NIL0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G221100 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 9.2e-95
Identity = 183/255 (71.76%), Postives = 214/255 (83.92%), Query Frame = 1


Query: 1   MSKLLLSHAHLLTLPYNHRSFSLNH---GLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKD 60
           MS L+L + +  T  Y    F LN      + +R+ +S+PDKRGRKK+Q+        KD
Sbjct: 1   MSSLILPYTY--TYGYARFPFKLNRFSPRTVTVRAAVSSPDKRGRKKKQA--------KD 60

Query: 61  DDSTSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNG 120
           DDS ++EN LRF+FMEELMDRARN D  GVS+V+YDM+AAGLSPGPRSFHGLVVSH LNG
Sbjct: 61  DDS-AVENGLRFSFMEELMDRARNRDSNGVSEVMYDMIAAGLSPGPRSFHGLVVSHALNG 120

Query: 121 DTEGAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLI 180
           D E AM+SLRREL++GLRP+HETF+AL+RLFGSKG A RGLEILAAME+LNYDIRQAWLI
Sbjct: 121 DEEAAMESLRRELAAGLRPVHETFLALIRLFGSKGRATRGLEILAAMEKLNYDIRQAWLI 180

Query: 181 LTEELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAG 240
           L EELV NK+LEDAN+VFLKGAK GL+ATD++YDL+IEEDCKAGDHSNAL+I+YEMEAAG
Sbjct: 181 LIEELVWNKHLEDANEVFLKGAKGGLKATDEVYDLLIEEDCKAGDHSNALDIAYEMEAAG 240

Query: 241 RMATTFHFNCLLSVQ 253
           RMATTFHFNCLLSVQ
Sbjct: 241 RMATTFHFNCLLSVQ 244

[Close]

BLAST of MELO3C010112 vs. TrEMBL
Match: A0A0B2PBH9_GLYSO (Pentatricopeptide repeat-containing protein, chloroplastic OS=Glycine soja GN=glysoja_013869 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 9.2e-95
Identity = 183/255 (71.76%), Postives = 214/255 (83.92%), Query Frame = 1


Query: 1   MSKLLLSHAHLLTLPYNHRSFSLNH---GLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKD 60
           MS L+L + +  T  Y    F LN      + +R+ +S+PDKRGRKK+Q+        KD
Sbjct: 1   MSSLILPYTY--TYGYARFPFKLNRFSPRTVTVRAAVSSPDKRGRKKKQA--------KD 60

Query: 61  DDSTSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNG 120
           DDS ++EN LRF+FMEELMDRARN D  GVS+V+YDM+AAGLSPGPRSFHGLVVSH LNG
Sbjct: 61  DDS-AVENGLRFSFMEELMDRARNRDSNGVSEVMYDMIAAGLSPGPRSFHGLVVSHALNG 120

Query: 121 DTEGAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLI 180
           D E AM+SLRREL++GLRP+HETF+AL+RLFGSKG A RGLEILAAME+LNYDIRQAWLI
Sbjct: 121 DEEAAMESLRRELAAGLRPVHETFLALIRLFGSKGRATRGLEILAAMEKLNYDIRQAWLI 180

Query: 181 LTEELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAG 240
           L EELV NK+LEDAN+VFLKGAK GL+ATD++YDL+IEEDCKAGDHSNAL+I+YEMEAAG
Sbjct: 181 LIEELVWNKHLEDANEVFLKGAKGGLKATDEVYDLLIEEDCKAGDHSNALDIAYEMEAAG 240

Query: 241 RMATTFHFNCLLSVQ 253
           RMATTFHFNCLLSVQ
Sbjct: 241 RMATTFHFNCLLSVQ 244

[Close]

BLAST of MELO3C010112 vs. TrEMBL
Match: I1LBT1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G168600 PE=4 SV=2)

HSP 1 Score: 354.8 bits (909), Expect = 9.2e-95
Identity = 180/255 (70.59%), Postives = 212/255 (83.14%), Query Frame = 1


Query: 1   MSKLLLSHAHLLTLPYNHRSFSLNH---GLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKD 60
           MS L+L + +  T  Y    F LN      + +R+ +SAPDKRGRKK+QS+         
Sbjct: 1   MSSLILPYTY--TYGYARFPFKLNRFSPRAVTVRAAVSAPDKRGRKKKQSK--------- 60

Query: 61  DDSTSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNG 120
           DD +++EN LRF+FMEELMDRARN D  GVS+V+YDM+AAGLSPGPRSFHGLVVSH LNG
Sbjct: 61  DDESAVENGLRFSFMEELMDRARNRDSNGVSEVMYDMIAAGLSPGPRSFHGLVVSHALNG 120

Query: 121 DTEGAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLI 180
           D E AM+SLRREL++GLRP+HETF+AL+RLFGSKG A RGLEILAAME+LNYDIRQAWLI
Sbjct: 121 DEEAAMESLRRELAAGLRPVHETFLALIRLFGSKGRATRGLEILAAMEKLNYDIRQAWLI 180

Query: 181 LTEELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAG 240
           L EELVRN +LEDAN+VFLKGAK GL+ATD++YDL+I+EDCK GDHSNAL+I+YEMEAAG
Sbjct: 181 LIEELVRNMHLEDANEVFLKGAKGGLKATDEVYDLLIQEDCKVGDHSNALDIAYEMEAAG 240

Query: 241 RMATTFHFNCLLSVQ 253
           RMATTFHFNCLLSVQ
Sbjct: 241 RMATTFHFNCLLSVQ 244

[Close]

BLAST of MELO3C010112 vs. TrEMBL
Match: A0A151U5M8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_007275 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 2.3e-93
Identity = 176/256 (68.75%), Postives = 211/256 (82.42%), Query Frame = 1


Query: 1   MSKLLL----SHAHLLTLPYNHRSFSLNHGLLPIRSVLSAPDKRGRKKRQSRHQQQLQLK 60
           MS L+L    +H +    P+    FS     + +R+ +S+PDKR RKK+ ++        
Sbjct: 1   MSSLILPYTCTHGYAPNFPFKFNRFSPR--TVTVRAAVSSPDKRSRKKKPAK-------- 60

Query: 61  DDDSTSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLN 120
            DD T+LEN LRF+FMEELMDRAR+ D  GVS+V+YDM+AAGL+PGPRSFHGLVVSH LN
Sbjct: 61  -DDETALENGLRFSFMEELMDRARSRDSNGVSEVMYDMIAAGLNPGPRSFHGLVVSHALN 120

Query: 121 GDTEGAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWL 180
           GD E AM+SLRREL++GLRP+HETF+ALVRLFGSKG A RGLEILAAME+LNYDIRQAW+
Sbjct: 121 GDEEAAMESLRRELAAGLRPVHETFLALVRLFGSKGRATRGLEILAAMEKLNYDIRQAWI 180

Query: 181 ILTEELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAA 240
           +L EELV+NK+LEDAN+VFLKGAK GLRATD++YDL+IEEDCK GDHSNAL+I+YEMEAA
Sbjct: 181 VLIEELVQNKHLEDANQVFLKGAKGGLRATDEVYDLLIEEDCKVGDHSNALDIAYEMEAA 240

Query: 241 GRMATTFHFNCLLSVQ 253
           GRMATTFHFNCLLSVQ
Sbjct: 241 GRMATTFHFNCLLSVQ 245

[Close]

BLAST of MELO3C010112 vs. TrEMBL
Match: A0A072VNI7_MEDTR (Plastid transcriptionally active protein OS=Medicago truncatula GN=MTR_1g079525 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 3.3e-92
Identity = 175/224 (78.12%), Postives = 196/224 (87.50%), Query Frame = 1


Query: 29  PIRSVLSAPDKRGRKKRQSRHQQQLQLKDDDSTSLENSLRFTFMEELMDRARNHDPLGVS 88
           P+R+ LS+P+KR RKK+Q        +KDDD T LENSLRF+FMEELM+RARN D  GVS
Sbjct: 25  PVRAALSSPEKRTRKKKQ--------VKDDD-TLLENSLRFSFMEELMNRARNRDSTGVS 84

Query: 89  DVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTEGAMQSLRRELSSGLRPLHETFVALVRLF 148
            V+YDM+AAGLSPGPRSFHGLVVS+ LNG+ + AM SLRREL +GLRP+HETFVALVRLF
Sbjct: 85  QVMYDMIAAGLSPGPRSFHGLVVSYALNGNEQAAMDSLRRELGAGLRPIHETFVALVRLF 144

Query: 149 GSKGLANRGLEILAAMERLNYDIRQAWLILTEELVRNKYLEDANKVFLKGAKAGLRATDK 208
           GSKG + RGLEIL AME LNYDIR AW+IL EELVRNK+LEDANKVFLKGAK GLRATD+
Sbjct: 145 GSKGHSTRGLEILGAMENLNYDIRHAWIILIEELVRNKHLEDANKVFLKGAKGGLRATDE 204

Query: 209 IYDLMIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQ 253
           +YDL+IEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQ
Sbjct: 205 LYDLLIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQ 239

[Close]

BLAST of MELO3C010112 vs. TAIR10
Match: AT3G04260.1 (AT3G04260.1 plastid transcriptionally active 3)

HSP 1 Score: 323.6 bits (828), Expect = 1.2e-88
Identity = 166/236 (70.34%), Postives = 191/236 (80.93%), Query Frame = 1


Query: 26  GLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKDDDSTS---------LENSLRFTFMEELM 85
           G+  IR  +SAP+K+ R++R+ +     +  +DDS S         LE SLR TFM+ELM
Sbjct: 24  GISSIRCSISAPEKKPRRRRKQKRGDGAE--NDDSLSFGSGEAVSALERSLRLTFMDELM 83

Query: 86  DRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTEGAMQSLRRELSSGLRP 145
           +RARN D  GVS+VIYDM+AAGLSPGPRSFHGLVV+H LNGD +GAM SLR+EL +G RP
Sbjct: 84  ERARNRDTSGVSEVIYDMIAAGLSPGPRSFHGLVVAHALNGDEQGAMHSLRKELGAGQRP 143

Query: 146 LHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLILTEELVRNKYLEDANKVFL 205
           L ET +ALVRL GSKG A RGLEILAAME+L YDIRQAWLIL EEL+R  +LEDANKVFL
Sbjct: 144 LPETMIALVRLSGSKGNATRGLEILAAMEKLKYDIRQAWLILVEELMRINHLEDANKVFL 203

Query: 206 KGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLLSVQ 253
           KGA+ G+RATD++YDLMIEEDCKAGDHSNAL+ISYEMEAAGRMATTFHFNCLLSVQ
Sbjct: 204 KGARGGMRATDQLYDLMIEEDCKAGDHSNALDISYEMEAAGRMATTFHFNCLLSVQ 257

[Close]

BLAST of MELO3C010112 vs. TAIR10
Match: AT1G09680.1 (AT1G09680.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-09
Identity = 46/189 (24.34%), Postives = 84/189 (44.44%), Query Frame = 1


Query: 63  LENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTEGA 122
           + N + FT +  +   +RN +   + +    M++ GL P    ++ LV     NGD   A
Sbjct: 342 IPNDVIFTTL--IHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAA 401

Query: 123 MQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDI-RQAWLILTEE 182
              +   +  GLRP   T+  L+  F   G     LEI   M++   ++ R  +  L   
Sbjct: 402 RNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCG 461

Query: 183 LVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMAT 242
           + +   + DA +   +  +AG++  D  Y +M++  CK GD     ++  EM++ G + +
Sbjct: 462 MCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPS 521

Query: 243 TFHFNCLLS 251
              +N LL+
Sbjct: 522 VVTYNVLLN 528

HSP 2 Score: 42.4 bits (98), Expect = 5.1e-04
Identity = 43/181 (23.76%), Postives = 68/181 (37.57%), Query Frame = 1


Query: 69  FTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTEGAMQSLRR 128
           FT+   +    + +   G   +  +M   GL P    F  L+  H+ NG+ +   +S ++
Sbjct: 311 FTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQK 370

Query: 129 ELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLILTEELVRNKYL 188
            LS GL+P    +  LV  F   G      +++AA   ++  IR+               
Sbjct: 371 MLSKGLQPDIVLYNTLVNGFCKNG------DLVAARNIVDGMIRR--------------- 430

Query: 189 EDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCL 248
                        GLR     Y  +I+  C+ GD   ALEI  EM+  G       F+ L
Sbjct: 431 -------------GLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSAL 457

Query: 249 L 250
           +
Sbjct: 491 V 457

[Close]

BLAST of MELO3C010112 vs. TAIR10
Match: AT5G59900.1 (AT5G59900.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 7.6e-08
Identity = 42/158 (26.58%), Postives = 67/158 (42.41%), Query Frame = 1


Query: 93  DMVAAGLSPGPRSFHGLVVSHTLNGDTEGAMQSLRRELSSGLRPLHETFVALVRLFGSKG 152
           +MV  GL      ++ L+  H   GD   A   +   ++  L P   T+ +L+  + SKG
Sbjct: 427 EMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKG 486

Query: 153 LANRGLEILAAMERLNYDIR-QAWLILTEELVRNKYLEDANKVFLKGAKAGLRATDKIYD 212
             N+ L +   M           +  L   L R   + DA K+F + A+  ++     Y+
Sbjct: 487 KINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYN 546

Query: 213 LMIEEDCKAGDHSNALEISYEMEAAGRMATTFHFNCLL 250
           +MIE  C+ GD S A E   EM   G +  T+ +  L+
Sbjct: 547 VMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLI 584

[Close]

BLAST of MELO3C010112 vs. NCBI nr
Match: gi|659086066|ref|XP_008443747.1| (PREDICTED: uncharacterized protein LOC103487261 isoform X2 [Cucumis melo])

HSP 1 Score: 499.6 bits (1285), Expect = 3.3e-138
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1


Query: 1   MSKLLLSHAHLLTLPYNHRSFSLNHGLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKDDDS 60
           MSKLLLSHAHLLTLPYNHRSFSLNHGLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKDDDS
Sbjct: 1   MSKLLLSHAHLLTLPYNHRSFSLNHGLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKDDDS 60

Query: 61  TSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTE 120
           TSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTE
Sbjct: 61  TSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTE 120

Query: 121 GAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLILTE 180
           GAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLILTE
Sbjct: 121 GAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLILTE 180

Query: 181 ELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMA 240
           ELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMA
Sbjct: 181 ELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMA 240

Query: 241 TTFHFNCLLSVQ 253
           TTFHFNCLLSVQ
Sbjct: 241 TTFHFNCLLSVQ 252

[Close]

BLAST of MELO3C010112 vs. NCBI nr
Match: gi|659086064|ref|XP_008443746.1| (PREDICTED: uncharacterized protein LOC103487261 isoform X1 [Cucumis melo])

HSP 1 Score: 499.6 bits (1285), Expect = 3.3e-138
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1


Query: 1   MSKLLLSHAHLLTLPYNHRSFSLNHGLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKDDDS 60
           MSKLLLSHAHLLTLPYNHRSFSLNHGLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKDDDS
Sbjct: 1   MSKLLLSHAHLLTLPYNHRSFSLNHGLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKDDDS 60

Query: 61  TSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTE 120
           TSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTE
Sbjct: 61  TSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTE 120

Query: 121 GAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLILTE 180
           GAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLILTE
Sbjct: 121 GAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLILTE 180

Query: 181 ELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMA 240
           ELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMA
Sbjct: 181 ELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMA 240

Query: 241 TTFHFNCLLSVQ 253
           TTFHFNCLLSVQ
Sbjct: 241 TTFHFNCLLSVQ 252

[Close]

BLAST of MELO3C010112 vs. NCBI nr
Match: gi|778664211|ref|XP_011660243.1| (PREDICTED: uncharacterized protein LOC101209618 [Cucumis sativus])

HSP 1 Score: 483.0 bits (1242), Expect = 3.2e-133
Identity = 244/252 (96.83%), Postives = 248/252 (98.41%), Query Frame = 1


Query: 1   MSKLLLSHAHLLTLPYNHRSFSLNHGLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKDDDS 60
           MSK LLSHAHLLTLP NHRSFSLNHGLLPIRSVLSAPDKRGRKKRQSRHQQQLQ KD+DS
Sbjct: 1   MSKFLLSHAHLLTLPSNHRSFSLNHGLLPIRSVLSAPDKRGRKKRQSRHQQQLQPKDNDS 60

Query: 61  TSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTE 120
           TSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTE
Sbjct: 61  TSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNGDTE 120

Query: 121 GAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLILTE 180
           GAMQSLRRELS+GL PLHETFVALVRLFGSKGLANRGLEILAAME+LNYDIRQAWLILTE
Sbjct: 121 GAMQSLRRELSAGLLPLHETFVALVRLFGSKGLANRGLEILAAMEKLNYDIRQAWLILTE 180

Query: 181 ELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMA 240
           ELVR+KYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMA
Sbjct: 181 ELVRSKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAGRMA 240

Query: 241 TTFHFNCLLSVQ 253
           TTFHFNCLLSVQ
Sbjct: 241 TTFHFNCLLSVQ 252

[Close]

BLAST of MELO3C010112 vs. NCBI nr
Match: gi|734324187|gb|KHN04962.1| (Pentatricopeptide repeat-containing protein, chloroplastic [Glycine soja])

HSP 1 Score: 354.8 bits (909), Expect = 1.3e-94
Identity = 183/255 (71.76%), Postives = 214/255 (83.92%), Query Frame = 1


Query: 1   MSKLLLSHAHLLTLPYNHRSFSLNH---GLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKD 60
           MS L+L + +  T  Y    F LN      + +R+ +S+PDKRGRKK+Q+        KD
Sbjct: 1   MSSLILPYTY--TYGYARFPFKLNRFSPRTVTVRAAVSSPDKRGRKKKQA--------KD 60

Query: 61  DDSTSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNG 120
           DDS ++EN LRF+FMEELMDRARN D  GVS+V+YDM+AAGLSPGPRSFHGLVVSH LNG
Sbjct: 61  DDS-AVENGLRFSFMEELMDRARNRDSNGVSEVMYDMIAAGLSPGPRSFHGLVVSHALNG 120

Query: 121 DTEGAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLI 180
           D E AM+SLRREL++GLRP+HETF+AL+RLFGSKG A RGLEILAAME+LNYDIRQAWLI
Sbjct: 121 DEEAAMESLRRELAAGLRPVHETFLALIRLFGSKGRATRGLEILAAMEKLNYDIRQAWLI 180

Query: 181 LTEELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAG 240
           L EELV NK+LEDAN+VFLKGAK GL+ATD++YDL+IEEDCKAGDHSNAL+I+YEMEAAG
Sbjct: 181 LIEELVWNKHLEDANEVFLKGAKGGLKATDEVYDLLIEEDCKAGDHSNALDIAYEMEAAG 240

Query: 241 RMATTFHFNCLLSVQ 253
           RMATTFHFNCLLSVQ
Sbjct: 241 RMATTFHFNCLLSVQ 244

[Close]

BLAST of MELO3C010112 vs. NCBI nr
Match: gi|356533668|ref|XP_003535382.1| (PREDICTED: uncharacterized protein LOC100802355 [Glycine max])

HSP 1 Score: 354.8 bits (909), Expect = 1.3e-94
Identity = 180/255 (70.59%), Postives = 212/255 (83.14%), Query Frame = 1


Query: 1   MSKLLLSHAHLLTLPYNHRSFSLNH---GLLPIRSVLSAPDKRGRKKRQSRHQQQLQLKD 60
           MS L+L + +  T  Y    F LN      + +R+ +SAPDKRGRKK+QS+         
Sbjct: 1   MSSLILPYTY--TYGYARFPFKLNRFSPRAVTVRAAVSAPDKRGRKKKQSK--------- 60

Query: 61  DDSTSLENSLRFTFMEELMDRARNHDPLGVSDVIYDMVAAGLSPGPRSFHGLVVSHTLNG 120
           DD +++EN LRF+FMEELMDRARN D  GVS+V+YDM+AAGLSPGPRSFHGLVVSH LNG
Sbjct: 61  DDESAVENGLRFSFMEELMDRARNRDSNGVSEVMYDMIAAGLSPGPRSFHGLVVSHALNG 120

Query: 121 DTEGAMQSLRRELSSGLRPLHETFVALVRLFGSKGLANRGLEILAAMERLNYDIRQAWLI 180
           D E AM+SLRREL++GLRP+HETF+AL+RLFGSKG A RGLEILAAME+LNYDIRQAWLI
Sbjct: 121 DEEAAMESLRRELAAGLRPVHETFLALIRLFGSKGRATRGLEILAAMEKLNYDIRQAWLI 180

Query: 181 LTEELVRNKYLEDANKVFLKGAKAGLRATDKIYDLMIEEDCKAGDHSNALEISYEMEAAG 240
           L EELVRN +LEDAN+VFLKGAK GL+ATD++YDL+I+EDCK GDHSNAL+I+YEMEAAG
Sbjct: 181 LIEELVRNMHLEDANEVFLKGAKGGLKATDEVYDLLIQEDCKVGDHSNALDIAYEMEAAG 240

Query: 241 RMATTFHFNCLLSVQ 253
           RMATTFHFNCLLSVQ
Sbjct: 241 RMATTFHFNCLLSVQ 244

The following BLAST results are available for this feature:

BLAST of MELO3C010112 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR26_ARATH	4.2e-08	24.34	Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis th...	[more]
PP437_ARATH	1.4e-06	26.58	Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis th...	[more]

BLAST of MELO3C010112 vs. TrEMBL


Match Name	E-value	Identity	Description
I1NIL0_SOYBN	9.2e-95	71.76	Uncharacterized protein OS=Glycine max GN=GLYMA_20G221100 PE=4 SV=1	[more]
A0A0B2PBH9_GLYSO	9.2e-95	71.76	Pentatricopeptide repeat-containing protein, chloroplastic OS=Glycine soja GN=gl...	[more]
I1LBT1_SOYBN	9.2e-95	70.59	Uncharacterized protein OS=Glycine max GN=GLYMA_10G168600 PE=4 SV=2	[more]
A0A151U5M8_CAJCA	2.3e-93	68.75	Uncharacterized protein OS=Cajanus cajan GN=KK1_007275 PE=4 SV=1	[more]
A0A072VNI7_MEDTR	3.3e-92	78.13	Plastid transcriptionally active protein OS=Medicago truncatula GN=MTR_1g079525 ...	[more]

BLAST of MELO3C010112 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04260.1	1.2e-88	70.34	plastid transcriptionally active 3	[more]
AT1G09680.1	2.4e-09	24.34	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G59900.1	7.6e-08	26.58	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of MELO3C010112 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086066\|ref\|XP_008443747.1\|	3.3e-138	100.00	PREDICTED: uncharacterized protein LOC103487261 isoform X2 [Cucumis melo]	[more]
gi\|659086064\|ref\|XP_008443746.1\|	3.3e-138	100.00	PREDICTED: uncharacterized protein LOC103487261 isoform X1 [Cucumis melo]	[more]
gi\|778664211\|ref\|XP_011660243.1\|	3.2e-133	96.83	PREDICTED: uncharacterized protein LOC101209618 [Cucumis sativus]	[more]
gi\|734324187\|gb\|KHN04962.1\|	1.3e-94	71.76	Pentatricopeptide repeat-containing protein, chloroplastic [Glycine soja]	[more]
gi\|356533668\|ref\|XP_003535382.1\|	1.3e-94	70.59	PREDICTED: uncharacterized protein LOC100802355 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010112T1	MELO3C010112T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 67..254 score: 4.7
None	No IPR available	PANTHER	PTHR31407:SF5	PLASTID TRANSCRIPTIONALLY ACTIVE 3	coord: 67..254 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010112	Cla001551	Watermelon (97103) v1	mewmB268
MELO3C010112	ClCG03G011350	Watermelon (Charleston Gray)	mewcgB247
MELO3C010112	Bhi02G001077	Wax gourd	mewgoB316
MELO3C010112	CSPI01G32810	Wild cucumber (PI 183967)	cpimeB062
MELO3C010112	Lsi06G007550	Bottle gourd (USVL1VR-Ls)	lsimeB410
MELO3C010112	Carg16460	Silver-seed gourd	carmeB0899

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010112	Watermelon (Charleston Gray)	mewcgB239
MELO3C010112	Cucurbita pepo (Zucchini)	cpemeB339
MELO3C010112	Bottle gourd (USVL1VR-Ls)	lsimeB398
MELO3C010112	Cucumber (Gy14) v2	cgybmeB040
MELO3C010112	Cucumber (Gy14) v2	cgybmeB055
MELO3C010112	Cucumber (Chinese Long) v3	cucmeB044
MELO3C010112	Cucumber (Chinese Long) v3	cucmeB061
MELO3C010112	Watermelon (97103) v2	mewmbB244
MELO3C010112	Watermelon (97103) v2	mewmbB252
MELO3C010112	Wax gourd	mewgoB302
MELO3C010112	Cucumber (Gy14) v1	cgymeB650
MELO3C010112	Cucumber (Gy14) v1	cgymeB651
MELO3C010112	Cucurbita maxima (Rimu)	cmameB062
MELO3C010112	Cucurbita maxima (Rimu)	cmameB107
MELO3C010112	Cucurbita moschata (Rifu)	cmomeB055
MELO3C010112	Cucurbita moschata (Rifu)	cmomeB099
MELO3C010112	Wild cucumber (PI 183967)	cpimeB044
MELO3C010112	Cucumber (Chinese Long) v2	cumeB043
MELO3C010112	Cucumber (Chinese Long) v2	cumeB062