MELO3C010101 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010101
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMethyl-accepting chemotaxis protein McpS
Locationchr2 : 12939033 .. 12939789 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCTTTTCACAGAAGCCCAAACCTGAGGGCTCTACGAGGAAGATCACCATCAAATCAAGAACGCACGAAAACCCCTCTCAAAGTCGCTTCATTAGACCTAATTCTGAGCAAGCTCAAAGAACTCAAGAGAGCCACGGATTCTGTCATAGAACCAAACGAATGGATGAAGCAAGAAGAGAAAATCTATAAAGACTTGACTGATTTGGAACTTGGGTTAAGTGTTATAGATCACAAAGAAGATACCCAGCTTGGGTATAAGCATGTAAAGCTCAGCTCGAAAAAGGTAAATTCTGGGCACTAGCGCATTGCCTGAAATTATTGTAGAATAAGACGATTCAACAAGGGTTTTAAGATTCATTGAGGAACTAAAACACGAAAAAGAAGAAAAAAGAAAAGAGGAAGAAAGAATGAAGATAATGAGAAAGGACAAAGAAAGAAGAAAAATGGAATGCGCATCCAAGATACGGATGTTGGATAAATAGAAAAGAAAAGAGGAAGCTGAGGCGAGGAGAACAAAAGAACAAGAGAAAGATGATCGTCTCCACCAAACTAATTTCTAGAAGAAGAAAAGAAATGTTAAGTCCCTGGCAGGGACAAAAGAGAACTTGGCAGAAGTCCAGACCACCGATAAAGCAAGGAAGGAGGAGCTTGCAAAGTTAAGCGAGCGAGTGGAAAATGTGGTGGAGAAGAATAAGGCTATCAAAGACCAGAAAGTGGATAACCTTGAGGTTATGAAGGAAGAGTTCACTTAG

mRNA sequence

ATGAGTTCTTTTCACAGAAGCCCAAACCTGAGGGCTCTACGAGGAAGATCACCATCAAATCAAGAACGCACGAAAACCCCTCTCAAAGTCGCTTCATTAGACCTAATTCTGAGCAAGCTCAAAGAACTCAAGAGAGCCACGGATTCTGTCATAGAACCAAACGAATGGATGAAGCAAGAAGAGAAAATCTATAAAGACTTGACTGATTTGGAACTTGGGTTAAGTGTTATAGATCACAAAGAAGATACCCAGCTTGGGTATAAGCATGTAAAGCTCAGCTCGAAAAAGAAGAAGAAAAGAAATGTTAAGTCCCTGGCAGGGACAAAAGAGAACTTGGCAGAAGTCCAGACCACCGATAAAGCAAGGAAGGAGGAGCTTGCAAAGTTAAGCGAGCGAGTGGAAAATGTGGTGGAGAAGAATAAGGCTATCAAAGACCAGAAAGTGGATAACCTTGAGGTTATGAAGGAAGAGTTCACTTAG

Coding sequence (CDS)

ATGAGTTCTTTTCACAGAAGCCCAAACCTGAGGGCTCTACGAGGAAGATCACCATCAAATCAAGAACGCACGAAAACCCCTCTCAAAGTCGCTTCATTAGACCTAATTCTGAGCAAGCTCAAAGAACTCAAGAGAGCCACGGATTCTGTCATAGAACCAAACGAATGGATGAAGCAAGAAGAGAAAATCTATAAAGACTTGACTGATTTGGAACTTGGGTTAAGTGTTATAGATCACAAAGAAGATACCCAGCTTGGGTATAAGCATGTAAAGCTCAGCTCGAAAAAGAAGAAGAAAAGAAATGTTAAGTCCCTGGCAGGGACAAAAGAGAACTTGGCAGAAGTCCAGACCACCGATAAAGCAAGGAAGGAGGAGCTTGCAAAGTTAAGCGAGCGAGTGGAAAATGTGGTGGAGAAGAATAAGGCTATCAAAGACCAGAAAGTGGATAACCTTGAGGTTATGAAGGAAGAGTTCACTTAG

Protein sequence

MSSFHRSPNLRALRGRSPSNQERTKTPLKVASLDLILSKLKELKRATDSVIEPNEWMKQEEKIYKDLTDLELGLSVIDHKEDTQLGYKHVKLSSKKKKKRNVKSLAGTKENLAEVQTTDKARKEELAKLSERVENVVEKNKAIKDQKVDNLEVMKEEFT*
Homology
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BLAST of MELO3C010101 vs. NCBI nr
Match: gi|659102436|ref|XP_008452128.1| (PREDICTED: uncharacterized protein LOC103493227 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 96  KKKKRNVKSLAGTKENLAEVQTTDKARKEELAKLSERVENVVEKNKAIKDQKVDNLEVMK 155
           ++KK+NV+SLA  KE LA++QT  K   +ELAK  ++VE +  KN+A ++QKV+ LEV+ 
Sbjct: 29  QEKKKNVESLAEMKEKLAKIQTAKKVETKELAKFDDQVEGLEMKNEATENQKVNCLEVVA 88

Query: 156 EEF 159
            EF
Sbjct: 89  AEF 91

The following BLAST results are available for this feature:
BLAST of MELO3C010101 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102436|ref|XP_008452128.1|1.1e-0649.21PREDICTED: uncharacterized protein LOC103493227 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010101T1MELO3C010101T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 126..146
scor