MELO3C010096 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010096
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ABC-2 type transporter family protein
Location	chr2 : 12790839 .. 12791101 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGCAGTGCAACAAAACTTAAACAAATGGCTGCTGAAGACGCAGAACTTCTTAAATGAAGTCACATCTCCCCGGGAAAAAACCAGTAAAAACAAAAATCATATTCCTGCAGGAGCCTATGGTACCACTGAGAAAGAGGATATAGTTAAGGTGGAATGTACCGTTAATATCAGGACACCGAACGGCCTTCTCTCTTCTGCTGCTGTTGTATCAATTGAGCAATTTAGCAGGTCAGATTATTACAAAATTTTGGTCATTTATTAA

mRNA sequence

ACGCAGTGCAACAAAACTTAAACAAATGGCTGCTGAAGACGCAGAACTTCTTAAATGAAGTCACATCTCCCCGGGAAAAAACCAGTAAAAACAAAAATCATATTCCTGCAGGAGCCTATGGTACCACTGAGAAAGAGGATATAGTTAAGGTGGAATGTACCGTTAATATCAGGACACCGAACGGCCTTCTCTCTTCTGCTGCTGTTGTATCAATTGAGCAATTTAGCAGGTCAGATTATTACAAAATTTTGGTCATTTATTAA

Coding sequence (CDS)

ACGCAGTGCAACAAAACTTAAACAAATGGCTGCTGAAGACGCAGAACTTCTTAAATGAAGTCACATCTCCCCGGGAAAAAACCAGTAAAAACAAAAATCATATTCCTGCAGGAGCCTATGGTACCACTGAGAAAGAGGATATAGTTAAGGTGGAATGTACCGTTAATATCAGGACACCGAACGGCCTTCTCTCTTCTGCTGCTGTTGTATCAATTGAGCAATTTAGCAGGTCAGATTATTACAAAATTTTGGTCATTTATTAA

Protein sequence

AVQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEKEDIVKVECTVNIRTPNGLLSSAAVVSIEQFSRSDYYKILVIY*

Homology

[Close]

BLAST of MELO3C010096 vs. TrEMBL
Match: A0A0A0LXY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665370 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-34
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 1   AVQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEKEDIVKVECTVNIRTPN 60
           AVQQNLNKWLLKTQNFLNEVTSPR KTSKNK+HIPA AY TTEKEDIVKVECTVNIRTPN
Sbjct: 64  AVQQNLNKWLLKTQNFLNEVTSPRGKTSKNKDHIPAEAYDTTEKEDIVKVECTVNIRTPN 123

Query: 61  GLLSSAAVVSIEQFSRSDYYKI 83
           GLLSSAAVVSIEQFSRSDY KI
Sbjct: 124 GLLSSAAVVSIEQFSRSDYNKI 145

[Close]

BLAST of MELO3C010096 vs. TrEMBL
Match: W9RGJ0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009368 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-13
Identity = 44/75 (58.67%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 2   VQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEKEDIVKVECTVNIRTPNG 61
           VQ  LN WLLKTQ FLNEVTSP  + SK+K  +P    G +  EDI   E T+N R P G
Sbjct: 60  VQDKLNVWLLKTQKFLNEVTSPLVRPSKSKKPVPENDIGDSIMEDIFVAEQTINSRMPQG 119

Query: 62  LLSSAAVVSIEQFSR 77
            LS AA+VSIEQFSR
Sbjct: 120 TLSLAAIVSIEQFSR 134

[Close]

BLAST of MELO3C010096 vs. TrEMBL
Match: A0A0S3S1U1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G009300 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-11
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1


Query: 1   AVQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEKEDIVKVECTVNIRTPN 60
           ++Q+ LN  + +TQNFLNEVT PR K  ++K   P   +G    EDI ++E T++ RTP+
Sbjct: 62  SIQERLNVLMSRTQNFLNEVTFPRAKPGQSKKPGPVNDFGLQFMEDIFRIEQTIDRRTPS 121

Query: 61  GLLSSAAVVSIEQFSR 77
           G+LS AAV+ IEQFSR
Sbjct: 122 GVLSLAAVICIEQFSR 137

[Close]

BLAST of MELO3C010096 vs. TrEMBL
Match: A0A103Y3B9_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_019953 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 1


Query: 1   AVQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAG-AYGTTEKEDIVKVECTVNIRTP 60
           +VQ  LN W+ KT NFL EVTSP  K  ++KNH   G AY  ++ ++    E T++ RTP
Sbjct: 63  SVQDALNMWVSKTTNFLGEVTSPLVKNVQDKNHTKTGDAYENSDMDEFFMAEQTIDSRTP 122

Query: 61  NGLLSSAAVVSIEQFSR 77
           +G LS AA+VSIEQFSR
Sbjct: 123 SGNLSLAAIVSIEQFSR 139

[Close]

BLAST of MELO3C010096 vs. TrEMBL
Match: D7T030_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01220 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.7e-11
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 1


Query: 1   AVQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEKEDIVKVECTVNIRTPN 60
           AVQ+ LN WL+KTQ+FLNEVTSP  +T   +    A    T + +D+   E T+   TP+
Sbjct: 59  AVQEQLNMWLVKTQSFLNEVTSPLVRTGHGRKPDSANVSDTQDMDDVFVPEQTIQSSTPS 118

Query: 61  GLLSSAAVVSIEQFSR 77
           G LS AA+VSIEQFSR
Sbjct: 119 GDLSLAAIVSIEQFSR 134

[Close]

BLAST of MELO3C010096 vs. TAIR10
Match: AT1G71240.1 (AT1G71240.1 Plant protein of unknown function (DUF639))

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-08
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 2   VQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEK-EDIVKVECTVNIRTPN 61
           VQ+  ++W+ K+Q  L++VTSP +K S++   I        E  E+++ VE TV   TP 
Sbjct: 67  VQERFSQWVSKSQKILSDVTSPLKKKSQSLKKIDLEDQQDFEDLEELLTVEQTVRSDTPK 126

Query: 62  GLLSSAAVVSIEQFS 76
           G LS  A++SIEQFS
Sbjct: 127 GFLSFDAIISIEQFS 141

[Close]

BLAST of MELO3C010096 vs. NCBI nr
Match: gi|659086615|ref|XP_008444028.1| (PREDICTED: uncharacterized protein LOC103487477 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1


Query: 1   AVQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEKEDIVKVECTVNIRTPN 60
           AVQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEKEDIVKVECTVNIRTPN
Sbjct: 64  AVQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEKEDIVKVECTVNIRTPN 123

Query: 61  GLLSSAAVVSIEQFSR 77
           GLLSSAAVVSIEQFSR
Sbjct: 124 GLLSSAAVVSIEQFSR 139

[Close]

BLAST of MELO3C010096 vs. NCBI nr
Match: gi|700211629|gb|KGN66725.1| (hypothetical protein Csa_1G665370 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 3.3e-34
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 1   AVQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEKEDIVKVECTVNIRTPN 60
           AVQQNLNKWLLKTQNFLNEVTSPR KTSKNK+HIPA AY TTEKEDIVKVECTVNIRTPN
Sbjct: 64  AVQQNLNKWLLKTQNFLNEVTSPRGKTSKNKDHIPAEAYDTTEKEDIVKVECTVNIRTPN 123

Query: 61  GLLSSAAVVSIEQFSRSDYYKI 83
           GLLSSAAVVSIEQFSRSDY KI
Sbjct: 124 GLLSSAAVVSIEQFSRSDYNKI 145

[Close]

BLAST of MELO3C010096 vs. NCBI nr
Match: gi|778664216|ref|XP_011660244.1| (PREDICTED: uncharacterized protein LOC101209123 isoform X1 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-31
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 1   AVQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEKEDIVKVECTVNIRTPN 60
           AVQQNLNKWLLKTQNFLNEVTSPR KTSKNK+HIPA AY TTEKEDIVKVECTVNIRTPN
Sbjct: 64  AVQQNLNKWLLKTQNFLNEVTSPRGKTSKNKDHIPAEAYDTTEKEDIVKVECTVNIRTPN 123

Query: 61  GLLSSAAVVSIEQFSR 77
           GLLSSAAVVSIEQFSR
Sbjct: 124 GLLSSAAVVSIEQFSR 139

[Close]

BLAST of MELO3C010096 vs. NCBI nr
Match: gi|778664223|ref|XP_011660246.1| (PREDICTED: uncharacterized protein LOC101209123 isoform X3 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-31
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 1   AVQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEKEDIVKVECTVNIRTPN 60
           AVQQNLNKWLLKTQNFLNEVTSPR KTSKNK+HIPA AY TTEKEDIVKVECTVNIRTPN
Sbjct: 64  AVQQNLNKWLLKTQNFLNEVTSPRGKTSKNKDHIPAEAYDTTEKEDIVKVECTVNIRTPN 123

Query: 61  GLLSSAAVVSIEQFSR 77
           GLLSSAAVVSIEQFSR
Sbjct: 124 GLLSSAAVVSIEQFSR 139

[Close]

BLAST of MELO3C010096 vs. NCBI nr
Match: gi|645223807|ref|XP_008218811.1| (PREDICTED: uncharacterized protein LOC103319093 [Prunus mume])

HSP 1 Score: 91.3 bits (225), Expect = 9.1e-16
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1


Query: 1   AVQQNLNKWLLKTQNFLNEVTSPREKTSKNKNHIPAGAYGTTEKEDIVKVECTVNIRTPN 60
           AVQ+ LN WLLKTQNFLNEVTSP  +T + +  +   A  T + EDI   E T+N RTPN
Sbjct: 65  AVQEKLNSWLLKTQNFLNEVTSPLVRTGQTRKPVTRDALETQDMEDIFMAEQTINNRTPN 124

Query: 61  GLLSSAAVVSIEQFSR 77
           G+LS AA++SIEQFSR
Sbjct: 125 GVLSLAAIISIEQFSR 140

The following BLAST results are available for this feature:

BLAST of MELO3C010096 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXY4_CUCSA	2.3e-34	93.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665370 PE=4 SV=1	[more]
W9RGJ0_9ROSA	1.0e-13	58.67	Uncharacterized protein OS=Morus notabilis GN=L484_009368 PE=4 SV=1	[more]
A0A0S3S1U1_PHAAN	1.2e-11	50.00	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G009300 PE=...	[more]
A0A103Y3B9_CYNCS	2.1e-11	51.95	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_019953 PE=4 ...	[more]
D7T030_VITVI	4.7e-11	51.32	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01220 PE=4 SV=...	[more]

BLAST of MELO3C010096 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71240.1	2.6e-08	41.33	Plant protein of unknown function (DUF639)	[more]

BLAST of MELO3C010096 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086615\|ref\|XP_008444028.1\|	1.5e-34	100.00	PREDICTED: uncharacterized protein LOC103487477 [Cucumis melo]	[more]
gi\|700211629\|gb\|KGN66725.1\|	3.3e-34	93.90	hypothetical protein Csa_1G665370 [Cucumis sativus]	[more]
gi\|778664216\|ref\|XP_011660244.1\|	2.0e-31	94.74	PREDICTED: uncharacterized protein LOC101209123 isoform X1 [Cucumis sativus]	[more]
gi\|778664223\|ref\|XP_011660246.1\|	2.0e-31	94.74	PREDICTED: uncharacterized protein LOC101209123 isoform X3 [Cucumis sativus]	[more]
gi\|645223807\|ref\|XP_008218811.1\|	9.1e-16	59.21	PREDICTED: uncharacterized protein LOC103319093 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010096T1	MELO3C010096T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31860	FAMILY NOT NAMED	coord: 1..76 score: 6.2
None	No IPR available	PANTHER	PTHR31860:SF3	SUBFAMILY NOT NAMED	coord: 1..76 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010096	Csa1G665370	Cucumber (Chinese Long) v2	cumeB043
MELO3C010096	CsaV3_1G044980	Cucumber (Chinese Long) v3	cucmeB044

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010096	Silver-seed gourd	carmeB0899
MELO3C010096	Cucumber (Chinese Long) v3	cucmeB061
MELO3C010096	Watermelon (97103) v2	mewmbB244
MELO3C010096	Watermelon (97103) v2	mewmbB252
MELO3C010096	Wax gourd	mewgoB302
MELO3C010096	Cucumber (Gy14) v1	cgymeB650
MELO3C010096	Cucumber (Gy14) v1	cgymeB651
MELO3C010096	Cucurbita maxima (Rimu)	cmameB062
MELO3C010096	Cucurbita maxima (Rimu)	cmameB107
MELO3C010096	Cucurbita moschata (Rifu)	cmomeB055
MELO3C010096	Cucurbita moschata (Rifu)	cmomeB099
MELO3C010096	Wild cucumber (PI 183967)	cpimeB044
MELO3C010096	Wild cucumber (PI 183967)	cpimeB062
MELO3C010096	Cucumber (Chinese Long) v2	cumeB062
MELO3C010096	Watermelon (Charleston Gray)	mewcgB239
MELO3C010096	Watermelon (Charleston Gray)	mewcgB247
MELO3C010096	Cucurbita pepo (Zucchini)	cpemeB339
MELO3C010096	Bottle gourd (USVL1VR-Ls)	lsimeB398
MELO3C010096	Bottle gourd (USVL1VR-Ls)	lsimeB410
MELO3C010096	Cucumber (Gy14) v2	cgybmeB040
MELO3C010096	Cucumber (Gy14) v2	cgybmeB055