MELO3C010092 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010092
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr2 : 12773754 .. 12774275 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTACTCTCCGAACCATCCTAGGTTTTACATCCAAGGGAACCATGAAATTAAATGGGATACTGAGGGGCAGAGAAGTGATCATACTCAATGGCATTGTCGAGGAATTGAAACTTCCACTGGCAAAGGAGACTAACTTTGGGGTAACGATTGGTGATGGATCAGTGCCGGAAGGAAGAGGAATTTGCAAACATGTTGAAATCAAGCTACCCGAGCTGACTACTACCATAGCAAACTTCCTAGCCACTGAACTGGGTAAAATTGATGTATTAGGTATGCAGTGGCTAAGTACTACTGGATTCATGGGCATGCATTGGCCTTCGACGACTATGACATTTATGGTCAGAAAATCACAGATCATACTAAAAGGGGAACCAACATTAGAAAAGACAGAACGTTCCTTGAAAATGATAACCAAGACTTGGGAGGTAGAAGACCAAGGATTTTTGCTAGAATTTCAGAACATGGAATTTGAAGAAGGAACAGAAGATGGTAGTGAGTACAAAACGAAGATATAA

mRNA sequence

ATGGAGATTACTCTCCGAACCATCCTAGGTTTTACATCCAAGGGAACCATGAAATTAAATGGGATACTGAGGGGCAGAGAAGTGATCATACTCAATGGCATTGTCGAGGAATTGAAACTTCCACTGGCAAAGGAGACTAACTTTGGGGTAACGATTGGTGATGGATCAGTGCCGGAAGGAAGAGGAATTTGCAAACATGTTGAAATCAAGCTACCCGAGCTGACTACTACCATAGCAAACTTCCTAGCCACTGAACTGGGTAAAATTGATGTATTAGGTATGCAGTGGCTAAGTACTACTGGATTCATGGGCATGCATTGGCCTTCGACGACTATGACATTTATGGTCAGAAAATCACAGATCATACTAAAAGGGGAACCAACATTAGAAAAGACAGAACGTTCCTTGAAAATGATAACCAAGACTTGGGAGGTAGAAGACCAAGGATTTTTGCTAGAATTTCAGAACATGGAATTTGAAGAAGGAACAGAAGATGGTAGTGAGTACAAAACGAAGATATAA

Coding sequence (CDS)

ATGGAGATTACTCTCCGAACCATCCTAGGTTTTACATCCAAGGGAACCATGAAATTAAATGGGATACTGAGGGGCAGAGAAGTGATCATACTCAATGGCATTGTCGAGGAATTGAAACTTCCACTGGCAAAGGAGACTAACTTTGGGGTAACGATTGGTGATGGATCAGTGCCGGAAGGAAGAGGAATTTGCAAACATGTTGAAATCAAGCTACCCGAGCTGACTACTACCATAGCAAACTTCCTAGCCACTGAACTGGGTAAAATTGATGTATTAGGTATGCAGTGGCTAAGTACTACTGGATTCATGGGCATGCATTGGCCTTCGACGACTATGACATTTATGGTCAGAAAATCACAGATCATACTAAAAGGGGAACCAACATTAGAAAAGACAGAACGTTCCTTGAAAATGATAACCAAGACTTGGGAGGTAGAAGACCAAGGATTTTTGCTAGAATTTCAGAACATGGAATTTGAAGAAGGAACAGAAGATGGTAGTGAGTACAAAACGAAGATATAA

Protein sequence

MEITLRTILGFTSKGTMKLNGILRGREVIILNGIVEELKLPLAKETNFGVTIGDGSVPEGRGICKHVEIKLPELTTTIANFLATELGKIDVLGMQWLSTTGFMGMHWPSTTMTFMVRKSQIILKGEPTLEKTERSLKMITKTWEVEDQGFLLEFQNMEFEEGTEDGSEYKTKI*
Homology
[Close]
BLAST of MELO3C010092 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.4e-24
Identity = 63/170 (37.06%), Postives = 103/170 (60.59%), Query Frame = 1 

Query: 1   MEITLRTILGFTSKGTMKLNGILRGREVIILNG-----------IVEELKLPLAKETNFG 60
           +E++L +++G T+ GT K+ G +  REV+++             +VEE+++   + T +G
Sbjct: 354 VELSLSSVVGLTAPGTSKIKGKVEDREVVVMIDCGATHNFISLRLVEEMQIATTETTQYG 413

Query: 61  VTIGDGSVPEGRGICKHVEIKLPELTTTIANFLATELGKID-VLGMQWLSTTGFMGMHWP 120
           V +G G   +G+G+C  V + LP LT  + +FL  ELG +D VLGMQWL   G M + W 
Sbjct: 414 VIMGSGKAVQGKGMCTGVVVGLPGLTV-VEDFLPLELGHLDMVLGMQWLPKQGAMTVDWR 473

Query: 121 STTMTFMVRKSQIILKGEPTLEKTERSLKMITKTWEVEDQGFLLEFQNME 159
           +  MTF VR  +++L+G+ +L +   SLKM+ K W+ ED+GFL   Q+ +
Sbjct: 474 NLAMTFAVRDVKVMLRGDLSLTRMAISLKMLMKQWQPEDRGFLSLLQSSD 522

[Close]
BLAST of MELO3C010092 vs. TrEMBL
Match: F6GVT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 61/153 (39.87%), Postives = 94/153 (61.44%), Query Frame = 1 

Query: 1   MEITLRTILGFTSKGTMKLNGILRGREVIILNG-----------IVEELKLPLAKETNFG 60
           +E++L +++G T+ GTMK+ G +R +EVIIL             +V++L LPL   T++G
Sbjct: 35  VELSLNSVVGLTTPGTMKIKGTIRSKEVIILVDSGATHNFLSLELVQQLALPLTTITSYG 94

Query: 61  VTIGDGSVPEGRGICKHVEIKLPELTTTIANFLATELGKIDV-LGMQWLSTTGFMGMHWP 120
           V +G G   +G+GIC+ V I +  LT  + +FL  ELG  DV LGM WL T G + ++W 
Sbjct: 95  VMMGIGISMKGKGICRGVCISMQGLTV-VEDFLPLELGNTDVILGMPWLGTLGDVKVNWK 154

Query: 121 STTMTFMVRKSQIILKGEPTLEKTERSLKMITK 142
             TM   + K+ I+LK +P+L +TE SLK + +
Sbjct: 155 MLTMKIKMGKAVIVLKRDPSLSRTEVSLKAMAR 186

[Close]
BLAST of MELO3C010092 vs. TrEMBL
Match: A0A087GH17_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G098300 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 58/171 (33.92%), Postives = 97/171 (56.73%), Query Frame = 1 

Query: 2   EITLRTILGFTSKGTMKLNGILRGREVIIL-----------NGIVEELKLPLAKETNFGV 61
           E++L +++G +S  T+KL G +RG  ++++             +V  L L     T +GV
Sbjct: 151 ELSLNSMVGISSPRTVKLRGTIRGESIVVMIDSGASHNFISEKVVTRLGLTATDTTGYGV 210

Query: 62  TIGDGSVPEGRGICKHVEIKLPELTTTIANFLATELGKID-VLGMQWLSTTGFMGMHWPS 121
             G G   +GRG+CK VE+ L +L   +A FL  ELG  D +LG+QWL++ G M  +W  
Sbjct: 211 LTGGGITVQGRGVCKDVELCLQDLVI-VAPFLPLELGSADAILGIQWLASLGDMKCNWKL 270

Query: 122 TTMTFMVRKSQIILKGEPTLEKTERSLKMITKTWEVEDQGFLLEFQNMEFE 161
             + FMV + ++ L+G+P+L  +  S+K + K  + E QG ++EF  ++ E
Sbjct: 271 QKLAFMVGEKEVELRGDPSLCCSPISMKGLWKALDREGQGVIIEFGGLQTE 320

[Close]
BLAST of MELO3C010092 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 59/147 (40.14%), Postives = 92/147 (62.59%), Query Frame = 1 

Query: 1    MEITLRTILGFTSKGTMKLNGILRGREVIIL--NG---------IVEELKLPLAKETNFG 60
            +E++L +++G T+ GTMK+ G +  +EVIIL  +G         +V++L LPL   T++G
Sbjct: 1043 VELSLNSVVGLTTPGTMKIKGTIGSKEVIILVDSGATHNFLSLELVQQLTLPLTTTTSYG 1102

Query: 61   VTIGDGSVPEGRGICKHVEIKLPELTTTIANFLATELGKIDV-LGMQWLSTTGFMGMHWP 120
            V +G G   +G+GIC+ V I +  L T + +FL  ELG  DV LGM WL T G + ++W 
Sbjct: 1103 VMMGTGISVKGKGICRGVCISMQGL-TVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWK 1162

Query: 121  STTMTFMVRKSQIILKGEPTLEKTERS 136
              TM   + K+ ++LKG+P+L +TE S
Sbjct: 1163 MLTMKIKMGKAVMVLKGDPSLSRTETS 1188

[Close]
BLAST of MELO3C010092 vs. TrEMBL
Match: A0A087FY99_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs54367U000800 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19
Identity = 58/171 (33.92%), Postives = 99/171 (57.89%), Query Frame = 1 

Query: 2   EITLRTILGFTSKGTMKLNGILRGREVIIL-----------NGIVEELKLPLAKETNFGV 61
           +++L +++G +S  T+KL G +RG  V+++             +V  L L     T++GV
Sbjct: 214 KLSLNSMVGISSPRTVKLRGTIRGESVMVMIDSGASHNFISEQVVTRLGLTATDTTSYGV 273

Query: 62  TIGDGSVPEGRGICKHVEIKLPELTTTIANFLATELGKID-VLGMQWLSTTGFMGMHWPS 121
             G G   +GRG+CK VE+ L +L   +A FL  ELG  D +LG+QWL++ G M  +W  
Sbjct: 274 LSGGGITVQGRGVCKDVELCLQDLVI-VAPFLPLELGSADAILGIQWLASLGDMKCNWKL 333

Query: 122 TTMTFMVRKSQIILKGEPTLEKTERSLKMITKTWEVEDQGFLLEFQNMEFE 161
             ++FMV + ++ L+G+P+L  +  S+K + K  + E QG ++EF  ++ E
Sbjct: 334 QKLSFMVGEEEVELRGDPSLCCSPISMKGLWKALDREGQGVIIEFGGLQTE 383

[Close]
BLAST of MELO3C010092 vs. NCBI nr
Match: gi|659115482|ref|XP_008457581.1| (PREDICTED: uncharacterized protein LOC103497247 [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 1.3e-48
Identity = 108/179 (60.34%), Postives = 129/179 (72.07%), Query Frame = 1 

Query: 2   EITLRTILGFTSKGTMKLNGILRGREVIIL-----------NGIVEELKLPLAKETNFGV 61
           EI+LRTILGFTSKGTMKL G ++GR+VIIL            GIV+EL L L  +T FGV
Sbjct: 229 EISLRTILGFTSKGTMKLRGTIKGRKVIILIDSGATHNFIHQGIVQELALSLHGKTKFGV 288

Query: 62  TIGDGSVPEGRGICKHVEIKLPELTTTIANFLATELGKID-VLGMQWLSTTGFMGMHWPS 121
           TIGDG+  EG+GICK +E KLP+LT  + +FL  ELG+ID VLGMQWLSTT FMG+HWPS
Sbjct: 289 TIGDGTTLEGKGICKKIEAKLPKLTI-VEDFLVIELGRIDLVLGMQWLSTTRFMGIHWPS 348

Query: 122 TTMTFMVRKSQIILKGEPTLEKTERSLKMITKTWEVEDQGFLLEFQNMEFEEGTEDGSE 169
             M FM   + ++LKG+P+L K E SL  I KTWE ED GFLLEFQ +E +  TED SE
Sbjct: 349 MMMVFMAGTTHVVLKGDPSLTKAECSLITIFKTWEEEDHGFLLEFQGVEIKVDTEDESE 406

[Close]
BLAST of MELO3C010092 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 9.3e-44
Identity = 100/175 (57.14%), Postives = 123/175 (70.29%), Query Frame = 1 

Query: 2   EITLRTILGFTSKGTMKLNGILRGREVIIL-----------NGIVEELKLPLAKETNFGV 61
           EI L+ I G TSKGTMK+ G ++G+EV+IL           N IVEE+ L L   T FGV
Sbjct: 371 EIELKAIHGLTSKGTMKIKGEIKGKEVLILIDSGATHNFIHNKIVEEVGLELENHTPFGV 430

Query: 62  TIGDGSVPEGRGICKHVEIKLPELTTTIANFLATELGKIDV-LGMQWLSTTGFMGMHWPS 121
           TIGDG+  +GRG+C  +E+KL E+T  +A+FLA ELG +DV LGMQWL+TTG M +HWPS
Sbjct: 431 TIGDGTRCQGRGVCNRLELKLKEITI-VADFLAIELGSVDVILGMQWLNTTGTMKIHWPS 490

Query: 122 TTMTFMVRKSQIILKGEPTLEKTERSLKMITKTWEVEDQGFLLEFQNMEFEEGTE 165
            TMTF + K Q ILKG+P+L + E SLK I KTWE +DQGFLLE QN E EE  E
Sbjct: 491 LTMTFRMGKKQFILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQNYEAEEDGE 544

[Close]
BLAST of MELO3C010092 vs. NCBI nr
Match: gi|659129649|ref|XP_008464771.1| (PREDICTED: uncharacterized protein LOC103502579 [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 2.5e-41
Identity = 90/137 (65.69%), Postives = 107/137 (78.10%), Query Frame = 1 

Query: 33  GIVEELKLPLAKETNFGVTIGDGSVPEGRGICKHVEIKLPELTTTIANFLATELGKID-V 92
           GIVEEL L L  +T FGVTIGDG+  EG+GICK VE+KLPELT  +A+FL  +LG+ID V
Sbjct: 42  GIVEELALSLEGKTEFGVTIGDGAALEGKGICKKVEVKLPELTI-VADFLVIDLGRIDLV 101

Query: 93  LGMQWLSTTGFMGMHWPSTTMTFMVRKSQIILKGEPTLEKTERSLKMITKTWEVEDQGFL 152
           LGMQWLSTTGFMG+HWPS TM FM   ++++LKG+P+L K E SLK I+KTWE ED GFL
Sbjct: 102 LGMQWLSTTGFMGIHWPSMTMVFMAGTTRVMLKGDPSLTKVECSLKTISKTWEEEDHGFL 161

Query: 153 LEFQNMEFEEGTEDGSE 169
           LEFQ +E E  TE  SE
Sbjct: 162 LEFQKVEIEVDTEAESE 177

[Close]
BLAST of MELO3C010092 vs. NCBI nr
Match: gi|778726094|ref|XP_011659055.1| (PREDICTED: uncharacterized protein LOC105436127 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 2.1e-40
Identity = 95/183 (51.91%), Postives = 122/183 (66.67%), Query Frame = 1 

Query: 2   EITLRTILGFTSKGTMKLNGILRGREVIIL-----------NGIVEELKLPLAKETNFGV 61
           E+ LRTI   +SKGTMKL G+++G+ V +L             + EE  + + ++T+FGV
Sbjct: 106 EVELRTITSLSSKGTMKLMGMVKGKAVTVLIDSGATHNFIHQTLAEERHILIDEDTSFGV 165

Query: 62  TIGDGSVPEGRGICKHVEIKLPELTTTIANFLATELGKIDV-LGMQWLSTTGFMGMHWPS 121
           TIG+G+  +G+G+CK VE+KL  LT  +A FLA ELG +DV LGMQWL TTG M +HWPS
Sbjct: 166 TIGNGTKCKGKGVCKRVELKLNTLTI-VAGFLAVELGSVDVVLGMQWLDTTGTMKVHWPS 225

Query: 122 TTMTFMVRKSQIILKGEPTLEKTERSLKMITKTWEVEDQGFLLEFQNMEFEEGTEDGSEY 173
            TMTF V + QI LKG+PTL K E SLK + KTWE +DQGFLL FQN E E   E   E 
Sbjct: 226 LTMTFQVGEKQITLKGDPTLIKAECSLKTLGKTWEDDDQGFLLGFQNYETEVENEYKEEQ 285

[Close]
BLAST of MELO3C010092 vs. NCBI nr
Match: gi|659077522|ref|XP_008439250.1| (PREDICTED: uncharacterized protein LOC103484090 [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-38
Identity = 90/170 (52.94%), Postives = 118/170 (69.41%), Query Frame = 1 

Query: 3   ITLRTILGFTSKGTMKLNGILRGREVIIL-----------NGIVEELKLPLAKETNFGVT 62
           I L+T+  F+SKGTMKL G +R +E++IL             +  +LKL L + T FG T
Sbjct: 146 IELKTMTRFSSKGTMKLKGWIRQKEIVILIDSGATHNFIHQSLAVDLKLGLEQHTQFGYT 205

Query: 63  IGDGSVPEGRGICKHVEIKLPELTTTIANFLATELGKID-VLGMQWLSTTGFMGMHWPST 122
           IG+G+  +G+GIC+ VE+KL E+T  IA+FLA ELG +D VLGMQWL TTG M +HWPS 
Sbjct: 206 IGNGTRCKGKGICRRVEVKLEEITI-IADFLAVELGSVDAVLGMQWLDTTGTMKIHWPSL 265

Query: 123 TMTFMVRKSQIILKGEPTLEKTERSLKMITKTWEVEDQGFLLEFQNMEFE 161
           TM+F     QIILKG+P+L K E SL+ + KTW+ +DQGFLLE+ NME E
Sbjct: 266 TMSFWNEGRQIILKGDPSLIKAECSLRTLEKTWQEDDQGFLLEWANMEVE 314

The following BLAST results are available for this feature:
BLAST of MELO3C010092 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC18_CUCME4.4e-2437.06Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
F6GVT4_VITVI2.2e-2039.87Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=... [more]
A0A087GH17_ARAAL1.5e-1933.92Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G098300 PE=4 SV=1[more]
A5B2I6_VITVI1.5e-1940.14Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1[more]
A0A087FY99_ARAAL4.2e-1933.92Uncharacterized protein OS=Arabis alpina GN=AALP_AAs54367U000800 PE=4 SV=1[more]
BLAST of MELO3C010092 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115482|ref|XP_008457581.1|1.3e-4860.34PREDICTED: uncharacterized protein LOC103497247 [Cucumis melo][more]
gi|778697580|ref|XP_011654353.1|9.3e-4457.14PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
gi|659129649|ref|XP_008464771.1|2.5e-4165.69PREDICTED: uncharacterized protein LOC103502579 [Cucumis melo][more]
gi|778726094|ref|XP_011659055.1|2.1e-4051.91PREDICTED: uncharacterized protein LOC105436127 [Cucumis sativus][more]
gi|659077522|ref|XP_008439250.1|1.2e-3852.94PREDICTED: uncharacterized protein LOC103484090 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010092T1MELO3C010092T1mRNA