MELO3C010091 (gene) Melon (DHL92) v3.5.1

NameMELO3C010091
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPlant protein of unknown function (DUF639)
Locationchr2 : 12746222 .. 12746497 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTACCTCAGTAGGCTACTTCATCATCTGGAAAATAGAGGTGCTATCCAAGGTGTTCTCTTAAACAACAGCTGTAGCATTTCTCATTTACTCTTTGCAGATGATATCTTGATATTTATAGAAGATAATGGTGTCTACCTAAAGAATCTACAGAATGCCCTTTCCCTTTTTGAATTTGCTTCTGGTTTGAAAATCAACCTGGCCAAGTCTACAATTAGCCCCATTAATGTTCCTTCAGCAAGTGCTTCCAGAGTTGCCATTGCCAACCTTTAG

mRNA sequence

ATGGACTACCTCAGTAGGCTACTTCATCATCTGGAAAATAGAGATGATATCTTGATATTTATAGAAGATAATGGTGTCTACCTAAAGAATCTACAGAATGCCCTTTCCCTTTTTGAATTTGCTTCTGGTTTGAAAATCAACCTGGCCAAGTCTACAATTAGCCCCATTAATGTTCCTTCAGCAAGTGCTTCCAGAGTTGCCATTGCCAACCTTTAG

Coding sequence (CDS)

ATGGACTACCTCAGTAGGCTACTTCATCATCTGGAAAATAGAGATGATATCTTGATATTTATAGAAGATAATGGTGTCTACCTAAAGAATCTACAGAATGCCCTTTCCCTTTTTGAATTTGCTTCTGGTTTGAAAATCAACCTGGCCAAGTCTACAATTAGCCCCATTAATGTTCCTTCAGCAAGTGCTTCCAGAGTTGCCATTGCCAACCTTTAG

Protein sequence

MDYLSRLLHHLENRDDILIFIEDNGVYLKNLQNALSLFEFASGLKINLAKSTISPINVPSASASRVAIANL*
BLAST of MELO3C010091 vs. TrEMBL
Match: A6YTD8_CUCME (Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 1

Query: 1   MDYLSRLLH------------------HLENRDDILIFIEDNGVYLKNLQNALSLFEFAS 60
           MDYLSRL+                   HL    DIL+F+EDN   LKNL+N + LF+ A 
Sbjct: 198 MDYLSRLIETLVDKIKGVSLNDNLNLTHLLFAYDILLFVEDNEDSLKNLRNVIHLFQLAL 257

Query: 61  GLKINLAKSTISPINVPSASASRVA 68
           G+ +NL KSTISP+N+ ++  ++VA
Sbjct: 258 GINVNLNKSTISPVNLGASRTNQVA 282

BLAST of MELO3C010091 vs. NCBI nr
Match: gi|659093714|ref|XP_008447678.1| (PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-12
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1

Query: 1  MDYLSRLLHHLENR--------------------DDILIFIEDNGVYLKNLQNALSLFEF 60
          MDYLSRLL HLE+                     DDIL+F+EDN +YLKNL+ A+SLFE 
Sbjct: 1  MDYLSRLLSHLESTGAIKGVCLANDCNISHILFADDILLFVEDNDLYLKNLRMAISLFEK 60

BLAST of MELO3C010091 vs. NCBI nr
Match: gi|659130833|ref|XP_008465376.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-11
Identity = 44/87 (50.57%), Postives = 52/87 (59.77%), Query Frame = 1

Query: 1   MDYLSRLLHHLENR--------------------DDILIFIEDNGVYLKNLQNALSLFEF 60
           MDYLSRLL HLE +                    DD+LIF+EDN  YL NLQ ALSLFE 
Sbjct: 108 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 167

Query: 61  ASGLKINLAKSTISPINVPSASASRVA 68
           ASGL  N +KSTISPIN+ +    ++A
Sbjct: 168 ASGLTFNHSKSTISPINISADRTDQIA 194

BLAST of MELO3C010091 vs. NCBI nr
Match: gi|659068893|ref|XP_008446987.1| (PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 43/87 (49.43%), Postives = 49/87 (56.32%), Query Frame = 1

Query: 1   MDYLSRLLHHLENRD--------------------DILIFIEDNGVYLKNLQNALSLFEF 60
           MDYLSRLL HLE+                      DIL+FIEDN  +L NL+ ALSLFE 
Sbjct: 182 MDYLSRLLSHLESSGAIKGVSLNSNCNISHILFAYDILLFIEDNDCFLNNLRMALSLFER 241

Query: 61  ASGLKINLAKSTISPINVPSASASRVA 68
           ASGLKINL KS + P+NV    A   A
Sbjct: 242 ASGLKINLLKSALVPVNVSLNRAKECA 268

BLAST of MELO3C010091 vs. NCBI nr
Match: gi|659096604|ref|XP_008449185.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-09
Identity = 41/79 (51.90%), Postives = 46/79 (58.23%), Query Frame = 1

Query: 1   MDYLSRLLHHLENR--------------------DDILIFIEDNGVYLKNLQNALSLFEF 60
           MDYLS L+  LE +                    DDILIF+EDN  Y+ NL+ AL LFE 
Sbjct: 27  MDYLSHLITDLEGKGKIGGVKFGPKLNLTHILFADDILIFVEDNEEYISNLKMALLLFES 86

BLAST of MELO3C010091 vs. NCBI nr
Match: gi|659071564|ref|XP_008460639.1| (PREDICTED: uncharacterized protein LOC103499413 [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = 1

Query: 1   MDYLSRLLH------------------HLENRDDILIFIEDNGVYLKNLQNALSLFEFAS 60
           MDYLSRL+                   HL   DDIL+F+EDN   L NL+  + LF+ AS
Sbjct: 29  MDYLSRLIESLGDKIEGVRMNNNLNLTHLLFADDILLFVEDNEDSLNNLKIVIQLFQLAS 88

Query: 61  GLKINLAKSTISPINVPSASASRVA 68
           GL +NL KSTI+PINV +A  ++VA
Sbjct: 89  GLNVNLNKSTITPINVDAARTNQVA 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A6YTD8_CUCME1.2e-0742.35Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659093714|ref|XP_008447678.1|5.1e-1254.43PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo][more]
gi|659130833|ref|XP_008465376.1|1.9e-1150.57PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|659068893|ref|XP_008446987.1|1.8e-0949.43PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo][more]
gi|659096604|ref|XP_008449185.1|5.2e-0951.90PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|659071564|ref|XP_008460639.1|1.5e-0845.88PREDICTED: uncharacterized protein LOC103499413 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006927DUF639
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010091T1MELO3C010091T1mRNA
MELO3C010091T2MELO3C010091T2mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006927Protein of unknown function DUF639PFAMPF04842DUF639coord: 424..723
score: 1.3
NoneNo IPR availableunknownCoilCoilcoord: 1..1
score: -coord: 424..427
scor
NoneNo IPR availablePANTHERPTHR31860FAMILY NOT NAMEDcoord: 424..727
score: 4.9E
NoneNo IPR availablePANTHERPTHR31860:SF3SUBFAMILY NOT NAMEDcoord: 424..727
score: 4.9E