MELO3C010090 (gene) Melon (DHL92) v3.5.1

NameMELO3C010090
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP synthase subunit b 2
Locationchr2 : 12742568 .. 12744264 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCACACTACTCTTCCTCATCTGATACAGATACTTCAAGGAAGTCTTATGCAAAGGTACTCTCTGATAGCAGTGAAGATGACAGTAGGAAGAAGTACAGATTAAACTCAAATGACAGTTCCAGTTAGAAGGAGCTCAACGGCAGATTTTAAAAAATTTGCTCTATCAGGTAAGGCTTTCGATAATGATAAAACAATGGTGGCTATAAGGAGGTTTTTCATGATGACTGGAGTAGAATTATGTTTACTCTGAAAAGACAAACAGAATTGGAATTCTCCTACAAGCCATTCCAACCAGACAAAGCAATTTTATCCCTAACCACAGAAGATGCTAAACTTCTCTGTAGCAACAAAAGTACCAACGTTTGGACAACTGTTGGATACTATTATGTGAGATTCGAAAGATGGAATACAGAGACATCCATGCCCACCAAACTCTTATTTCTAGCTATGGAGGATGGCTTAAGTTCAAAAGCATTCCACTTCATCTCTGGAACTACAACACATTTGTCAACATTGGCAACACATGAGGTGGTTTCCTTGCTGTGGCTAGGGAGACTATAGAGATGGAGAACTTGATTGATGCGGAAGTGACGGTTAGATATAACTACTCTGGCTTTGTCCCTGCCTCCACACTCTACATTGATGATCAAGGCAAAGAATTTATCATATACATTGTTCCCCCTCTTGATGGAAGATGGTTTGTGGAAAGGAATGTCAACTTCCATGGATCCTTCAGAACTGAAGCTGCTAATGAATTTGATGAACACAACCACAAAGCAGAAGCATTTTCCTTCATCAGAAAACATGTTGCTCCTCCGGCCATAGCTAAGAATCAGGATGGAATCAACACTCAAAGATCTGACAAGACTACAAATTCGGATCACACTTTGGCCAAGAAAGACAGCTCATCTGATTCAAAGTGTGATCCTTTTGATCAAATTTCTGAAGAAAAAGGGAAAGAGAAAGGCAAAGCAGTTATGTCCATTAATGAGCAAGATCTGAGTCATTGCTCCAAAAGATCCAAACGTACTTCAAAGAGAAAAGTTTCCTTTTTGTCTCCGAGTGGAAATACTTCCCACGGTTCTGGTTACTCAAAAAGGAAGATTTTGAATATTAATTGCAAATCGTTGGTTTTAAAAACCAATGAGGAAGGTTCGGTTGTCAAGAAAGATCACCAGAATAAATCCTATCAGAAGAAATACTACAGAACCAAAAGAGTTAAGGCAAGCAATAATGAGAACCAGGTTCATCCCCTTCCTCCTAAAAGTAAGGATGACAACTCCACTAATTTAATGGTGGATCTTGGGCCACTCTCAACATTGGAAACTCTTCAATACTCTAATGGGAATTTGATGCAAACTGACAAGCCAACAAAAACAAGTAAAGAGGAGGCACCAGAAGCTACTGCACTCAAGACTAACAGCAACACTGAAAGGATTTCTATGGAAGAAGATGTCAAAGAGGAAGAAGACATTGGAAAAGAAATTGAAGGGAACAGCTCTGATAGCAAGGAGGTTAAGGAGAAGGCTTTCAAAGCAAAACTTGTTGATTGGCTAAAGGAAAATGAACTCAAATTGTCACCAAAACATCCTTTAGACTATACTAGTACTTCTCTGAATTCTGTGAATGTGTCTATGGAAAATGTGGATATTTTAGGCATTGAGCCATTGGGGGATCATAGTTTCAAATGA

mRNA sequence

ATGACTGCACACTACTCTTCCTCATCTGATACAGATACTTCAAGGAAGTCTTATGCAAAGGTACTCTCTGATAGCAGTGAAGATGACAGTAGGAAGAAGGAGACTATAGAGATGGAGAACTTGATTGATGCGGAAGTGACGGTTAGATATAACTACTCTGGCTTTGTCCCTGCCTCCACACTCTACATTGATGATCAAGGCAAAGAATTTATCATATACATTGTTCCCCCTCTTGATGGAAGATGGTTTGTGGAAAGGAATGTCAACTTCCATGGATCCTTCAGAACTGAAGCTGCTAATGAATTTGATGAACACAACCACAAAGCAGAAGCATTTTCCTTCATCAGAAAACATGTTGCTCCTCCGGCCATAGCTAAGAATCAGGATGGAATCAACACTCAAAGATCTGACAAGACTACAAATTCGGATCACACTTTGGCCAAGAAAGACAGCTCATCTGATTCAAAGTGTGATCCTTTTGATCAAATTTCTGAAGAAAAAGGGAAAGAGAAAGGCAAAGCAGTTATGTCCATTAATGAGCAAGATCTGAGTCATTGCTCCAAAAGATCCAAACGTACTTCAAAGAGAAAAGTTTCCTTTTTGTCTCCGAGTGGAAATACTTCCCACGGTTCTGGTTACTCAAAAAGGAAGATTTTGAATATTAATTGCAAATCGTTGGTTTTAAAAACCAATGAGGAAGGTTCGGTTGTCAAGAAAGATCACCAGAATAAATCCTATCAGAAGAAATACTACAGAACCAAAAGAGTTAAGGCAAGCAATAATGAGAACCAGGTTCATCCCCTTCCTCCTAAAAGTAAGGATGACAACTCCACTAATTTAATGGTGGATCTTGGGCCACTCTCAACATTGGAAACTCTTCAATACTCTAATGGGAATTTGATGCAAACTGACAAGCCAACAAAAACAAGTAAAGAGGAGGCACCAGAAGCTACTGCACTCAAGACTAACAGCAACACTGAAAGGATTTCTATGGAAGAAGATGTCAAAGAGGAAGAAGACATTGGAAAAGAAATTGAAGGGAACAGCTCTGATAGCAAGGAGGTTAAGGAGAAGGCTTTCAAAGCAAAACTTGTTGATTGGCTAAAGGAAAATGAACTCAAATTGTCACCAAAACATCCTTTAGACTATACTAGTACTTCTCTGAATTCTGTGAATGTGTCTATGGAAAATGTGGATATTTTAGGCATTGAGCCATTGGGGGATCATAGTTTCAAATGA

Coding sequence (CDS)

ATGACTGCACACTACTCTTCCTCATCTGATACAGATACTTCAAGGAAGTCTTATGCAAAGGTACTCTCTGATAGCAGTGAAGATGACAGTAGGAAGAAGGAGACTATAGAGATGGAGAACTTGATTGATGCGGAAGTGACGGTTAGATATAACTACTCTGGCTTTGTCCCTGCCTCCACACTCTACATTGATGATCAAGGCAAAGAATTTATCATATACATTGTTCCCCCTCTTGATGGAAGATGGTTTGTGGAAAGGAATGTCAACTTCCATGGATCCTTCAGAACTGAAGCTGCTAATGAATTTGATGAACACAACCACAAAGCAGAAGCATTTTCCTTCATCAGAAAACATGTTGCTCCTCCGGCCATAGCTAAGAATCAGGATGGAATCAACACTCAAAGATCTGACAAGACTACAAATTCGGATCACACTTTGGCCAAGAAAGACAGCTCATCTGATTCAAAGTGTGATCCTTTTGATCAAATTTCTGAAGAAAAAGGGAAAGAGAAAGGCAAAGCAGTTATGTCCATTAATGAGCAAGATCTGAGTCATTGCTCCAAAAGATCCAAACGTACTTCAAAGAGAAAAGTTTCCTTTTTGTCTCCGAGTGGAAATACTTCCCACGGTTCTGGTTACTCAAAAAGGAAGATTTTGAATATTAATTGCAAATCGTTGGTTTTAAAAACCAATGAGGAAGGTTCGGTTGTCAAGAAAGATCACCAGAATAAATCCTATCAGAAGAAATACTACAGAACCAAAAGAGTTAAGGCAAGCAATAATGAGAACCAGGTTCATCCCCTTCCTCCTAAAAGTAAGGATGACAACTCCACTAATTTAATGGTGGATCTTGGGCCACTCTCAACATTGGAAACTCTTCAATACTCTAATGGGAATTTGATGCAAACTGACAAGCCAACAAAAACAAGTAAAGAGGAGGCACCAGAAGCTACTGCACTCAAGACTAACAGCAACACTGAAAGGATTTCTATGGAAGAAGATGTCAAAGAGGAAGAAGACATTGGAAAAGAAATTGAAGGGAACAGCTCTGATAGCAAGGAGGTTAAGGAGAAGGCTTTCAAAGCAAAACTTGTTGATTGGCTAAAGGAAAATGAACTCAAATTGTCACCAAAACATCCTTTAGACTATACTAGTACTTCTCTGAATTCTGTGAATGTGTCTATGGAAAATGTGGATATTTTAGGCATTGAGCCATTGGGGGATCATAGTTTCAAATGA

Protein sequence

MTAHYSSSSDTDTSRKSYAKVLSDSSEDDSRKKETIEMENLIDAEVTVRYNYSGFVPASTLYIDDQGKEFIIYIVPPLDGRWFVERNVNFHGSFRTEAANEFDEHNHKAEAFSFIRKHVAPPAIAKNQDGINTQRSDKTTNSDHTLAKKDSSSDSKCDPFDQISEEKGKEKGKAVMSINEQDLSHCSKRSKRTSKRKVSFLSPSGNTSHGSGYSKRKILNINCKSLVLKTNEEGSVVKKDHQNKSYQKKYYRTKRVKASNNENQVHPLPPKSKDDNSTNLMVDLGPLSTLETLQYSNGNLMQTDKPTKTSKEEAPEATALKTNSNTERISMEEDVKEEEDIGKEIEGNSSDSKEVKEKAFKAKLVDWLKENELKLSPKHPLDYTSTSLNSVNVSMENVDILGIEPLGDHSFK*
BLAST of MELO3C010090 vs. Swiss-Prot
Match: DNLI1_DICDI (DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-06
Identity = 56/252 (22.22%), Postives = 96/252 (38.10%), Query Frame = 1

Query: 134 QRSDKTTNSDHTLAKKDSSSDSKCDPFDQISEEKGKEKGKAVMS-------INEQDLSHC 193
           ++  K T      +KK+   + + +  +Q  EE+ +E+ +           IN ++    
Sbjct: 51  KKEKKETKPKRKSSKKNKEEEEEEEQEEQDGEEEQEEEEEYQQQDEEIEEDINGEEEMEL 110

Query: 194 SKRSKRTSKRKVSFLSPSGNTSHGSGYSKRKILNINCKSLVLKTNEEGSVVKKDHQNKSY 253
            +  K  +K+K   L    N    S  S +K            T E     K + Q+   
Sbjct: 111 DENEKEKNKKKKQSLKTKENKESKSSSSSKK------------TIENKETKKPEKQSSKQ 170

Query: 254 QKKYYRTKRVKASNNENQVHPLPPKSKDDNSTNLMVDLGPLSTLETLQYSNGNLMQTDKP 313
                R KR K  ++E           DDN  + M+D    +  +++   +    +    
Sbjct: 171 SNNLKRLKRKKMDDDEEDEED--ENKTDDNDLDDMLDDDSDNEKDSISSKDKEYKEKVLK 230

Query: 314 TKTSKEEAPEATALKTNSNTERISMEEDVKEEEDIGKEIEGNSSDSKEVKEKAFKAKLVD 373
            K  KE+  +   LK   + E+   E++ KE+E+  K+ +      KE+KEK  K K   
Sbjct: 231 DKEKKEKEKKEKELKEKESKEKEKKEKEKKEKEE--KDKKEKELKEKELKEKELKDKKEK 286

Query: 374 WLKENELKLSPK 379
            LKE E +L  K
Sbjct: 291 ELKEKEKELKDK 286

BLAST of MELO3C010090 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.4e-14
Identity = 65/237 (27.43%), Postives = 113/237 (47.68%), Query Frame = 1

Query: 33  KETIEMENLIDAEVTVRYNYSGFVPASTLYIDDQGKEFIIYIVPPLDGRWFVERNVNFHG 92
           KET E+ +LI+A + V+ NYSGF+PA    ID + + +II ++   +G+W + RN + HG
Sbjct: 248 KETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQVIVKTEGKWHLGRNPSIHG 307

Query: 93  SFRTEAANEFDEHNHKAEAFSFIRKHVAPPAIAKNQDGINTQRSDKTTNSDHTLAKKDSS 152
           +F  EAA  FDE N  +E + F       P  A +   +   + D     +  L + +  
Sbjct: 308 TFTREAARRFDEFNLNSEQYFFEGNLAISPEKAVS---MVIGKEDWKKKGNGPLLENNKK 367

Query: 153 SDSKCDPFDQISEEKGKEKGKAVMSINEQDLSHCSKR--------------SKRTSKRKV 212
             +  D  +   +    EK K  M I +++LS  S++               ++  KRKV
Sbjct: 368 LGAMMDFLNYDGDSDSSEKRK--MEIVDEELSVISQKGGKLFYKGENSKSAGQKRGKRKV 427

Query: 213 SFLSPSGNTSHGSGYSKRKILNINCK-SLVLKTNEEGSVVKKDHQNKSYQKKYYRTK 255
           SF +P   T     Y ++     + K +  L++ ++  + K + ++K   KK Y+ K
Sbjct: 428 SFDTPKSKTFL---YDRKSAPQTHYKINSPLESPKKKLLKKFEKESKGKGKKIYKIK 476

BLAST of MELO3C010090 vs. TrEMBL
Match: A0A0A0LH82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055060 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 32/70 (45.71%), Postives = 38/70 (54.29%), Query Frame = 1

Query: 53  SGFVPASTLYIDDQGKEFIIYIVPPLDGRWFVERNVNFHGSFRTEAANEFDEHNHKAEAF 112
           S FVPA     DD G  F I IV    G+W VERNV  HG F+++A   F E N  A+ F
Sbjct: 6   SRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQF 65

Query: 113 SFIRKHVAPP 123
           +FI     PP
Sbjct: 66  TFIGSEGLPP 75

BLAST of MELO3C010090 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 3.2e-18
Identity = 89/333 (26.73%), Postives = 143/333 (42.94%), Query Frame = 1

Query: 33  KETIEMENLIDAEVTVRYNYSGFVPASTLYIDDQGKEFIIYIVPPLDGRWFVERNVNFHG 92
           +ET   +NLI+A++ +RYNYSGF+PA+    D++G +F I +V   +G+W +ERNV  HG
Sbjct: 321 EETRSAKNLIEAKIKIRYNYSGFLPANVRIFDNEGNKFSIQVVTHPEGKWLIERNVRLHG 380

Query: 93  SFRTEAANEFDEHNHKAEAFSFI-RKHVAPPAIAKNQDGINTQRSDKTTNSDHTLAKKDS 152
           +F+ +AA  FDE N ++E F F   + ++P  +A + DG  +   D+ +     + K D 
Sbjct: 381 TFKRQAAAAFDEFNPESEQFFFEGMEAISPDFLATSSDGRKSSTPDQPSALKSVIIKPDK 440

Query: 153 SSDSKC---------DPFDQISEEKGKE-----KGKAVMSINEQ----DLSHCSKRSKRT 212
            + S                 + + G E         V+   +Q     L   S  +   
Sbjct: 441 IATSPSLLNEEAVNDSNVHATANKSGLEILPGISNDGVLDKGKQKVDIQLPPFSALNLDK 500

Query: 213 SKRKVSFLSPSGNTSHGSGYSKRKILNINC----KSLVLKTNEEGSVVKKDHQNKSYQKK 272
           SKRKVSF SP   T+         I N +      S  L + E+   V ++   K     
Sbjct: 501 SKRKVSFYSPCNKTN---------IFNPDSAPANHSPSLSSPEKKQKVSRERSIKKRLPS 560

Query: 273 YYRTKRVKASNNENQVHPLPPKSKDDNSTN----LMVDLGPLSTLETLQ-----YSNGNL 332
                +      E  + P+   + +  ++     L VDLG L  L+  +     +S+ N 
Sbjct: 561 TQPNSKANQKKGELNIQPIQMMAHEGEASKKGLLLTVDLGDLPILDPNKSFEDHHSSDNA 620

Query: 333 MQTDKPTKTSKEEAPEATALKTNSNTERISMEE 334
              D    T+ E  PE   +K   N    S  E
Sbjct: 621 EVID---ITNTEVVPETPEMKMQVNENSNSSSE 641

BLAST of MELO3C010090 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 65/237 (27.43%), Postives = 113/237 (47.68%), Query Frame = 1

Query: 33  KETIEMENLIDAEVTVRYNYSGFVPASTLYIDDQGKEFIIYIVPPLDGRWFVERNVNFHG 92
           KET E+ +LI+A + V+ NYSGF+PA    ID + + +II ++   +G+W + RN + HG
Sbjct: 248 KETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQVIVKTEGKWHLGRNPSIHG 307

Query: 93  SFRTEAANEFDEHNHKAEAFSFIRKHVAPPAIAKNQDGINTQRSDKTTNSDHTLAKKDSS 152
           +F  EAA  FDE N  +E + F       P  A +   +   + D     +  L + +  
Sbjct: 308 TFTREAARRFDEFNLNSEQYFFEGNLAISPEKAVS---MVIGKEDWKKKGNGPLLENNKK 367

Query: 153 SDSKCDPFDQISEEKGKEKGKAVMSINEQDLSHCSKR--------------SKRTSKRKV 212
             +  D  +   +    EK K  M I +++LS  S++               ++  KRKV
Sbjct: 368 LGAMMDFLNYDGDSDSSEKRK--MEIVDEELSVISQKGGKLFYKGENSKSAGQKRGKRKV 427

Query: 213 SFLSPSGNTSHGSGYSKRKILNINCK-SLVLKTNEEGSVVKKDHQNKSYQKKYYRTK 255
           SF +P   T     Y ++     + K +  L++ ++  + K + ++K   KK Y+ K
Sbjct: 428 SFDTPKSKTFL---YDRKSAPQTHYKINSPLESPKKKLLKKFEKESKGKGKKIYKIK 476

BLAST of MELO3C010090 vs. NCBI nr
Match: gi|700205999|gb|KGN61118.1| (hypothetical protein Csa_2G055060 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 32/70 (45.71%), Postives = 38/70 (54.29%), Query Frame = 1

Query: 53  SGFVPASTLYIDDQGKEFIIYIVPPLDGRWFVERNVNFHGSFRTEAANEFDEHNHKAEAF 112
           S FVPA     DD G  F I IV    G+W VERNV  HG F+++A   F E N  A+ F
Sbjct: 6   SRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQF 65

Query: 113 SFIRKHVAPP 123
           +FI     PP
Sbjct: 66  TFIGSEGLPP 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DNLI1_DICDI1.3e-0622.22DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
E5GB30_CUCME7.4e-1427.43Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LH82_CUCSA1.1e-0645.71Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055060 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659071590|ref|XP_008460776.1|3.2e-1826.73PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
gi|307135793|gb|ADN33672.1|1.1e-1327.43hypothetical protein [Cucumis melo subsp. melo][more]
gi|700205999|gb|KGN61118.1|1.6e-0645.71hypothetical protein Csa_2G055060 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010090T1MELO3C010090T1mRNA