MELO3C010085 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010085
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUbiquitin domain-containing protein
Locationchr2 : 12621784 .. 12622024 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGCCGAAGCCGAGCTTTCTCTTGCGCAAGTAATTGTTGACAGTGCAGGGGTCATCGTTCAAAATGCAGATTTGACAATCTGTTACGATGAGAGAGGTCCATACATACCATTGCTTCATTTACAAAATTATGATATGTTATTTTTAGTTTAATCATCGAAATCAATCCTACCGCAGGAGCAAAATATGAACTCCCCAACTATGTTTTAAGTGAGCCGACCAACTTAATTCGTGACAGCTAA

mRNA sequence

CTGCCGAAGCCGAGCTTTCTCTTGCGCAAGTAATTGTTGACAGTGCAGGGGTCATCGTTCAAAATGCAGATTTGACAATCTGTTACGATGAGAGAGGAGCAAAATATGAACTCCCCAACTATGTTTTAAGTGAGCCGACCAACTTAATTCGTGACAGCTAA

Coding sequence (CDS)

CTGCCGAAGCCGAGCTTTCTCTTGCGCAAGTAATTGTTGACAGTGCAGGGGTCATCGTTCAAAATGCAGATTTGACAATCTGTTACGATGAGAGAGGAGCAAAATATGAACTCCCCAACTATGTTTTAAGTGAGCCGACCAACTTAATTCGTGACAGCTAA

Protein sequence

AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS*
Homology
[Close]
BLAST of MELO3C010085 vs. Swiss-Prot
Match: UBTD1_XENTR (Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.1e-06
Identity = 23/45 (51.11%), Postives = 28/45 (62.22%), Query Frame = 1 

Query: 7   LAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRD 52
           LAQ IVD A + + +  LT CYDE G +Y+LP Y L+ P NLI +
Sbjct: 89  LAQAIVDGASITLPHGSLTECYDELGTRYQLPVYCLAPPVNLIME 133

[Close]
BLAST of MELO3C010085 vs. Swiss-Prot
Match: UBTD1_DANRE (Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.2e-06
Identity = 23/45 (51.11%), Postives = 28/45 (62.22%), Query Frame = 1 

Query: 7   LAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRD 52
           LAQ IVD A + + +  LT CYDE G +Y+LP Y L+ P NLI +
Sbjct: 86  LAQAIVDGANITLPHGSLTECYDELGNRYQLPVYCLAPPVNLISE 130

[Close]
BLAST of MELO3C010085 vs. Swiss-Prot
Match: UBTD2_DANRE (Ubiquitin domain-containing protein 2 OS=Danio rerio GN=ubtd2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.8e-06
Identity = 22/45 (48.89%), Postives = 28/45 (62.22%), Query Frame = 1 

Query: 7   LAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRD 52
           LAQ I+D A + + +  LT CYDE G +Y+LP Y LS P N+I +
Sbjct: 88  LAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMIEE 132

[Close]
BLAST of MELO3C010085 vs. TrEMBL
Match: A0A0A0KVJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083480 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-19
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1 

Query: 1   AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 53
           AEAELSLAQ IVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS
Sbjct: 63  AEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 114

[Close]
BLAST of MELO3C010085 vs. TrEMBL
Match: B9N8W8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s39570g PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.2e-18
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 1   AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 53
           AEAELSLAQ IVDSAGVI+QNADLT+CYDERGAKYELP YVLSEPTNLIR++
Sbjct: 63  AEAELSLAQAIVDSAGVIIQNADLTVCYDERGAKYELPKYVLSEPTNLIRET 114

[Close]
BLAST of MELO3C010085 vs. TrEMBL
Match: A0A151S963_CAJCA (Ubiquitin domain-containing protein 1 OS=Cajanus cajan GN=KK1_026761 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.2e-18
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 1   AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 53
           AEAELSLAQ IVDSAGVIVQ++DLT+CYDERGAKYELP YVLSEPTNLIRDS
Sbjct: 63  AEAELSLAQAIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLIRDS 114

[Close]
BLAST of MELO3C010085 vs. TrEMBL
Match: B9SEV6_RICCO (Ubiquitin domain-containing protein, putative OS=Ricinus communis GN=RCOM_0106280 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-17
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 1   AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIR 51
           AEAELSLAQ IVDSAGVIVQNADLTICYDERGAKYELP YVLSEPTNLIR
Sbjct: 63  AEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPKYVLSEPTNLIR 112

[Close]
BLAST of MELO3C010085 vs. TrEMBL
Match: A0A061FG33_THECC (Ubiquitin domain-containing protein OS=Theobroma cacao GN=TCM_032011 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-17
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 1   AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 53
           AEA+L+LAQ IVDSAGVIVQNADLTICYDERGAKYELP YVLSEPTNLI+DS
Sbjct: 63  AEADLTLAQAIVDSAGVIVQNADLTICYDERGAKYELPKYVLSEPTNLIQDS 114

[Close]
BLAST of MELO3C010085 vs. TAIR10
Match: AT1G53400.1 (AT1G53400.1 Ubiquitin domain-containing protein)

HSP 1 Score: 89.0 bits (219), Expect = 9.7e-19
Identity = 42/48 (87.50%), Postives = 43/48 (89.58%), Query Frame = 1 

Query: 1   AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNL 49
           AEA++SLAQ IVDSAGVIVQN DLT+CYDERGAKYELP YVLSEPTNL
Sbjct: 63  AEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVLSEPTNL 110

[Close]
BLAST of MELO3C010085 vs. TAIR10
Match: AT5G45740.1 (AT5G45740.1 Ubiquitin domain-containing protein)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-18
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 1 

Query: 1   AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRD 52
           AEA+L LAQ IVDSAGVIVQN DLT+C+DERGA+YELP YVLSEPTNLIR+
Sbjct: 65  AEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYELPRYVLSEPTNLIRE 115

[Close]
BLAST of MELO3C010085 vs. TAIR10
Match: AT1G16960.1 (AT1G16960.1 Ubiquitin domain-containing protein)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-15
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1 

Query: 2   EAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLI 50
           E +LSLAQ I++SAGVIVQN DLTICYDE+G+KYELP YVL +P+NLI
Sbjct: 64  EDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELPKYVLRDPSNLI 111

[Close]
BLAST of MELO3C010085 vs. NCBI nr
Match: gi|659101695|ref|XP_008451743.1| (PREDICTED: ubiquitin domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 8.3e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 

Query: 1   AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 53
           AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS
Sbjct: 63  AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 114

[Close]
BLAST of MELO3C010085 vs. NCBI nr
Match: gi|449438909|ref|XP_004137230.1| (PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-19
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1 

Query: 1   AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 53
           AEAELSLAQ IVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS
Sbjct: 63  AEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 114

[Close]
BLAST of MELO3C010085 vs. NCBI nr
Match: gi|566153708|ref|XP_006370109.1| (hypothetical protein POPTR_0001s39570g [Populus trichocarpa])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 1   AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 53
           AEAELSLAQ IVDSAGVI+QNADLT+CYDERGAKYELP YVLSEPTNLIR++
Sbjct: 63  AEAELSLAQAIVDSAGVIIQNADLTVCYDERGAKYELPKYVLSEPTNLIRET 114

[Close]
BLAST of MELO3C010085 vs. NCBI nr
Match: gi|743917531|ref|XP_011002754.1| (PREDICTED: ubiquitin domain-containing protein 1-like [Populus euphratica])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 1   AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 53
           AEAELSLAQ IVDSAGVI+QNADLT+CYDERGAKYELP YVLSEPTNLIR++
Sbjct: 63  AEAELSLAQAIVDSAGVIIQNADLTVCYDERGAKYELPKYVLSEPTNLIRET 114

[Close]
BLAST of MELO3C010085 vs. NCBI nr
Match: gi|1012340111|gb|KYP51332.1| (Ubiquitin domain-containing protein 1 [Cajanus cajan])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 

Query: 1   AEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 53
           AEAELSLAQ IVDSAGVIVQ++DLT+CYDERGAKYELP YVLSEPTNLIRDS
Sbjct: 63  AEAELSLAQAIVDSAGVIVQSSDLTVCYDERGAKYELPKYVLSEPTNLIRDS 114

The following BLAST results are available for this feature:
BLAST of MELO3C010085 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UBTD1_XENTR3.1e-0651.11Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis GN=ubtd1 PE=2 SV=1[more]
UBTD1_DANRE5.2e-0651.11Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2 SV=1[more]
UBTD2_DANRE6.8e-0648.89Ubiquitin domain-containing protein 2 OS=Danio rerio GN=ubtd2 PE=2 SV=1[more]
BLAST of MELO3C010085 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVJ9_CUCSA1.7e-1998.08Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083480 PE=4 SV=1[more]
B9N8W8_POPTR9.2e-1888.46Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s39570g PE=4 SV=1[more]
A0A151S963_CAJCA9.2e-1890.38Ubiquitin domain-containing protein 1 OS=Cajanus cajan GN=KK1_026761 PE=4 SV=1[more]
B9SEV6_RICCO1.2e-1796.00Ubiquitin domain-containing protein, putative OS=Ricinus communis GN=RCOM_010628... [more]
A0A061FG33_THECC1.2e-1790.38Ubiquitin domain-containing protein OS=Theobroma cacao GN=TCM_032011 PE=4 SV=1[more]
BLAST of MELO3C010085 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G53400.19.7e-1987.50 Ubiquitin domain-containing protein[more]
AT5G45740.11.3e-1882.35 Ubiquitin domain-containing protein[more]
AT1G16960.11.7e-1575.00 Ubiquitin domain-containing protein[more]
BLAST of MELO3C010085 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659101695|ref|XP_008451743.1|8.3e-20100.00PREDICTED: ubiquitin domain-containing protein 2-like [Cucumis melo][more]
gi|449438909|ref|XP_004137230.1|2.4e-1998.08PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis sativus][more]
gi|566153708|ref|XP_006370109.1|1.3e-1788.46hypothetical protein POPTR_0001s39570g [Populus trichocarpa][more]
gi|743917531|ref|XP_011002754.1|1.3e-1788.46PREDICTED: ubiquitin domain-containing protein 1-like [Populus euphratica][more]
gi|1012340111|gb|KYP51332.1|1.3e-1790.38Ubiquitin domain-containing protein 1 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
Vocabulary: Molecular Function
TermDefinition
GO:0043130ubiquitin binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0043130 ubiquitin binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010085T1MELO3C010085T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13609UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATEDcoord: 1..51
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010085Watermelon (97103) v2mewmbB244
MELO3C010085Cucurbita maxima (Rimu)cmameB107
MELO3C010085Cucurbita moschata (Rifu)cmomeB099
MELO3C010085Wild cucumber (PI 183967)cpimeB044
MELO3C010085Cucumber (Chinese Long) v2cumeB043
MELO3C010085Watermelon (Charleston Gray)mewcgB239
MELO3C010085Bottle gourd (USVL1VR-Ls)lsimeB398
MELO3C010085Cucumber (Gy14) v2cgybmeB040
MELO3C010085Cucumber (Chinese Long) v3cucmeB044