MELO3C010082 (gene) Melon (DHL92) v3.5.1

NameMELO3C010082
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationchr2 : 12574001 .. 12574168 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGTGAGGATGTTGACGACGTGGACGAGGGAGACTCCAAGTACGCGACGACTATCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACATAGTCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGATTAG

mRNA sequence

ATGACATATTGTGAGGATGTTGACGACGTGGACGAGGGAGACTCCAAGTACGCGACGACTATCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACATAGTCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGATTAG

Coding sequence (CDS)

ATGACATATTGTGAGGATGTTGACGACGTGGACGAGGGAGACTCCAAGTACGCGACGACTATCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACATAGTCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGATTAG

Protein sequence

MTYCEDVDDVDEGDSKYATTIASEDIQYIETTNEWSQWRDDIVESMFTDWQLRND*
BLAST of MELO3C010082 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.7e-19
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSKYATTIASEDIQYIETTNEWSQWRDDIVESMFTDWQLR 54
           MTYC DV+D DEGDS YATT ASEDIQYIETTNEWSQWRDD+  SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C010082 vs. TrEMBL
Match: A0A0A0M0G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.9e-07
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1

Query: 1  MTYCEDVDDVDEGDSKYATTIASEDIQYIETTNEWSQWRDDIVESMFTDWQLRN 55
          +T  + + DVDE D  YATT    +I Y E +N+WSQWRDD+VE+MF  WQL N
Sbjct: 14 ITNVKILKDVDEVDLNYATT-EGNNINYNEASNKWSQWRDDLVEAMFNGWQLCN 66

BLAST of MELO3C010082 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.9e-06
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSKYATTIASEDIQYIETTNEWSQWRDDIVESMFT 49
           MT  +  D++DE DS +ATT A++DI YIET+NEWSQWRD++ E + T
Sbjct: 311 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDNLAEEIMT 357

BLAST of MELO3C010082 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 100.5 bits (249), Expect = 9.7e-19
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSKYATTIASEDIQYIETTNEWSQWRDDIVESMFTDWQLR 54
           MTYC DV+D DEGDS YATT ASEDIQYIETTNEWSQWRDD+  SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C010082 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSKYATTIASEDIQYIETTNEWSQWRDDIVESMFTDWQLRN 55
           MTYC+DVDDVDEGD  YATT   E+I YIE TNEWSQWRD + ESMFTDWQLRN
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRN 195

BLAST of MELO3C010082 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 8.8e-12
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSKYATTIASEDIQYIETTNEWSQWRDDIVESMFTDWQLRN 55
           MT  +  D++DE DS +ATT A++DI YIET+NEWSQWRDD+ E MFTDW+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

BLAST of MELO3C010082 vs. NCBI nr
Match: gi|659126170|ref|XP_008463047.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-11
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSKYATTIASEDIQYIETTNEWSQWRDDIVESMFTD 50
           MT C+D+DDVDEG+S Y  TIA EDI+YIETTNEWSQW D + E++F +
Sbjct: 203 MTNCDDIDDVDEGNSAYTKTIAIEDIKYIETTNEWSQWYDKLAEALFIE 251

BLAST of MELO3C010082 vs. NCBI nr
Match: gi|659125597|ref|XP_008462767.1| (PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 7.4e-11
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 1

Query: 1   MTYCEDVDDVDEGDSKYATTIASEDIQYIETTNEWSQWRDDIVESMFTDWQLR 54
           MT  ED+ D++E DS YATT   ++IQYIETTNEW+QW+D++ ++MF +WQLR
Sbjct: 107 MTNGEDLYDINEEDSAYATTTTGDNIQYIETTNEWTQWQDELSKAMFIEWQLR 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME6.7e-1983.02Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0M0G4_CUCSA5.9e-0753.70Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1[more]
E5GCB5_CUCME2.9e-0656.25Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307135889|gb|ADN33754.1|9.7e-1983.02retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659099182|ref|XP_008450472.1|1.4e-1777.78PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|659121362|ref|XP_008460622.1|8.8e-1264.81PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
gi|659126170|ref|XP_008463047.1|2.0e-1165.31PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659125597|ref|XP_008462767.1|7.4e-1158.49PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010082T1MELO3C010082T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None