MELO3C010081 (gene) Melon (DHL92) v3.5.1

NameMELO3C010081
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein
Locationchr2 : 12555830 .. 12555997 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGTGACAACATTGACGATGTGGAAGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCACAACATTGAGACGACAAACGAGTGGTCTCAGTGGTGCGAGGAACTAGTCGAATCGATGTTCACTGATTGGAAGTTGTGTAACGCTTAG

mRNA sequence

ATGACATATTGTGACAACATTGACGATGTGGAAGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCACAACATTGAGACGACAAACGAGTGGTCTCAGTGGTGCGAGGAACTAGTCGAATCGATGTTCACTGATTGGAAGTTGTGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGTGACAACATTGACGATGTGGAAGAGGGGGACTCCACGTACGCAACGACCACCGCTTCAGAAGACATTCACAACATTGAGACGACAAACGAGTGGTCTCAGTGGTGCGAGGAACTAGTCGAATCGATGTTCACTGATTGGAAGTTGTGTAACGCTTAG

Protein sequence

MTYCDNIDDVEEGDSTYATTTASEDIHNIETTNEWSQWCEELVESMFTDWKLCNA*
BLAST of MELO3C010081 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.9e-15
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1

Query: 1   MTYCDNIDDVEEGDSTYATTTASEDIHNIETTNEWSQWCEELVESMFTDWK 52
           MTYC++++D +EGDSTYATTTASEDI  IETTNEWSQW ++L  SMFTDW+
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQ 333

BLAST of MELO3C010081 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 1

Query: 1   MTYCDNIDDVEEGDSTYATTTASEDIHNIETTNEWSQWCEELVESMFTDWKLCNA 56
           MTYCD++DDV+EGD  YATTT  E+IH IE TNEWSQW ++L ESMFTDW+L NA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

BLAST of MELO3C010081 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 87.4 bits (215), Expect = 8.5e-15
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1

Query: 1   MTYCDNIDDVEEGDSTYATTTASEDIHNIETTNEWSQWCEELVESMFTDWK 52
           MTYC++++D +EGDSTYATTTASEDI  IETTNEWSQW ++L  SMFTDW+
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQ 333

BLAST of MELO3C010081 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-09
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1

Query: 1   MTYCDNIDDVEEGDSTYATTTASEDIHNIETTNEWSQWCEELVESMFTDWKLCN 55
           MT  D  D+++E DST+ATT A++DIH IET+NEWSQW ++L E MFTDW+L N
Sbjct: 150 MTNFDIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

BLAST of MELO3C010081 vs. NCBI nr
Match: gi|659126170|ref|XP_008463047.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-09
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1

Query: 1   MTYCDNIDDVEEGDSTYATTTASEDIHNIETTNEWSQWCEELVESMFTD 50
           MT CD+IDDV+EG+S Y  T A EDI  IETTNEWSQW ++L E++F +
Sbjct: 203 MTNCDDIDDVDEGNSAYTKTIAIEDIKYIETTNEWSQWYDKLAEALFIE 251

BLAST of MELO3C010081 vs. NCBI nr
Match: gi|659083293|ref|XP_008442271.1| (PREDICTED: uncharacterized protein LOC103486178 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-08
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1

Query: 1   MTYCDNIDDVEEGDSTYATTTASEDIHNIETTNEWSQWCEELVESMFTDWKLCN 55
           MT  +  DD++E DST+ATT   +DIH IET+NEW+ W +ELVE MF+DW+L N
Sbjct: 105 MTNFNIEDDIDEVDSTHATTVG-DDIHYIETSNEWTPWRDELVEEMFSDWELRN 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME5.9e-1572.55Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659099182|ref|XP_008450472.1|1.0e-1570.91PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|8.5e-1572.55retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659121362|ref|XP_008460622.1|1.4e-0961.11PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
gi|659126170|ref|XP_008463047.1|3.1e-0961.22PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659083293|ref|XP_008442271.1|2.6e-0857.41PREDICTED: uncharacterized protein LOC103486178 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010081T1MELO3C010081T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None