MELO3C010078 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010078
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr2 : 12496842 .. 12497473 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTATTGAGCAACTCATGGGTTCGTTACAGGCATATGAAGAAAAGAAAAAAAAGAAGGAATCAAGGATCAATTTCTCAAGTTACACACTAATTGAGGAGTTAGTCCCAATAATAGAATTGGACAAGGATGAGAATGCCGACATCAAGGACGAGGAGGAGGACAAGGAGAAGGACGTGGTTGGAGGCCTAGTGAAAACAACAATAACTACCAAAGAGGATCGAGAAACTCAACAAAAGGTCGTGAACAGGGCAACTCAAGGTCAAAGGTATGATAAATCAAACATTAAATGTTATAACTGTCAGAAGTTTGGTCATCAAACATCCGAATGTAGATCTCCTAGAAACAATAGAGTTGAAGAGAAGACAAACTATATTTAAGATATAGTCAACAATGTGACACCTTGTTGATGGTTTGCACAAATAGTAAATGGAGTAAAGATAAAACATGGTACCTGGACACTGGGGCAAGCAATCATATGCGTGGAGTAAAAAGCATGTTCGTGGAGCTTGATGAATTGGTGAGTGACAATTTAGCGTTTGACAATGAATCCAAGATAGAAGTGAAAGGAAGAGGTAACATTTTCATCCGATTAAAGAATGGTGAGCACCAACTTATTTCAAATGTCTAA

mRNA sequence

ATGACTATTGAGCAACTCATGGGTTCGTTACAGGCATATGAAGAAAAGAAAAAAAAGAAGGAATCAAGGATCAATTTCTCAAGTTACACACTAATTGAGGAGTTAGTCCCAATAATAGAATTGGACAAGGATGAGAATGCCGACATCAAGGACGAGGAGGAGGACAAGGAGAAGGACGTGGTTGGAGGCCTAGTGAAAACAACAATAACTACCAAAGAGGATCGAGAAACTCAACAAAAGGTCGTGAACAGGGCAACTCAAGGTCAAAGTAAATGGAGTAAAGATAAAACATGGTACCTGGACACTGGGGCAAGCAATCATATGCGTGGAGTAAAAAGCATGTTCGTGGAGCTTGATGAATTGGTGAGTGACAATTTAGCGTTTGACAATGAATCCAAGATAGAAGTGAAAGGAAGAGGTAACATTTTCATCCGATTAAAGAATGGTGAGCACCAACTTATTTCAAATGTCTAA

Coding sequence (CDS)

ATGACTATTGAGCAACTCATGGGTTCGTTACAGGCATATGAAGAAAAGAAAAAAAAGAAGGAATCAAGGATCAATTTCTCAAGTTACACACTAATTGAGGAGTTAGTCCCAATAATAGAATTGGACAAGGATGAGAATGCCGACATCAAGGACGAGGAGGAGGACAAGGAGAAGGACGTGGTTGGAGGCCTAGTGAAAACAACAATAACTACCAAAGAGGATCGAGAAACTCAACAAAAGGTCGTGAACAGGGCAACTCAAGGTCAAAGTAAATGGAGTAAAGATAAAACATGGTACCTGGACACTGGGGCAAGCAATCATATGCGTGGAGTAAAAAGCATGTTCGTGGAGCTTGATGAATTGGTGAGTGACAATTTAGCGTTTGACAATGAATCCAAGATAGAAGTGAAAGGAAGAGGTAACATTTTCATCCGATTAAAGAATGGTGAGCACCAACTTATTTCAAATGTCTAA

Protein sequence

MTIEQLMGSLQAYEEKKKKKESRINFSSYTLIEELVPIIELDKDENADIKDEEEDKEKDVVGGLVKTTITTKEDRETQQKVVNRATQGQSKWSKDKTWYLDTGASNHMRGVKSMFVELDELVSDNLAFDNESKIEVKGRGNIFIRLKNGEHQLISNV*
Homology
[Close]
BLAST of MELO3C010078 vs. TrEMBL
Match: Q9SFE1_ARATH (T26F17.17 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-19
Identity = 74/181 (40.88%), Postives = 93/181 (51.38%), Query Frame = 1 

Query: 1   MTIEQLMGSLQAYEEKKKKKESRINFSSYTLIEELVPIIELDKDENADIKDEE---EDKE 60
           MTIEQL+GSLQAYEEKKKKKE          I E V  + + K+EN          E + 
Sbjct: 185 MTIEQLLGSLQAYEEKKKKKED---------IVEQVLNMRITKEENGQSYQRRGGGEVRG 244

Query: 61  KDVVGGLVKTTITTKEDRETQQKVVNRATQGQSKWSKDKTWYLDT--------------- 120
           +   G          ED   Q+   N+  + ++ + ++K    D                
Sbjct: 245 RGRGGYGNGRGWRPHEDNTNQRAPSNKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENH 304

Query: 121 ------GASNHMRGVKSMFVELDELVSDNLAFDNESKIEVKGRGNIFIRLKNGEHQLISN 158
                 GASNHM G KSMF ELDE V  N+A  +ESK+EVKG+GNI IRLKNG+HQ ISN
Sbjct: 305 KWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISN 356

[Close]
BLAST of MELO3C010078 vs. TrEMBL
Match: A0A151QP37_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_047341 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.5e-18
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 73  EDRETQQKVVNRATQGQSKWSKDKTWYLDTGASNHMRGVKSMFVELDELVSDNLAFDNES 132
           E+R  +   +  A +GQ K  +D  WYLD+GASNHM G +SMFVELDE V  N+AF +ES
Sbjct: 244 EERCQEDGTLLLAYKGQDK-GEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDES 303

Query: 133 KIEVKGRGNIFIRLKNGEHQLISNV 158
           K+ V+G+GN+ IRLKNGEHQ ISNV
Sbjct: 304 KVAVEGKGNVLIRLKNGEHQFISNV 327

[Close]
BLAST of MELO3C010078 vs. TrEMBL
Match: A0A151R7G0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_040164 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.5e-18
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 73  EDRETQQKVVNRATQGQSKWSKDKTWYLDTGASNHMRGVKSMFVELDELVSDNLAFDNES 132
           E+R  +   +  A +GQ K  +D  WYLD+GASNHM G +SMFVELDE V  N+AF +ES
Sbjct: 254 EERCQEDGTLLLAYKGQDK-GEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDES 313

Query: 133 KIEVKGRGNIFIRLKNGEHQLISNV 158
           K+ V+G+GN+ IRLKNGEHQ ISNV
Sbjct: 314 KVAVEGKGNVLIRLKNGEHQFISNV 337

[Close]
BLAST of MELO3C010078 vs. TrEMBL
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_033991 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.5e-18
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 73  EDRETQQKVVNRATQGQSKWSKDKTWYLDTGASNHMRGVKSMFVELDELVSDNLAFDNES 132
           E+R  +   +  A +GQ K  +D  WYLD+GASNHM G +SMFVELDE V  N+AF +ES
Sbjct: 309 EERCQEDGTLLLAYKGQDK-GEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDES 368

Query: 133 KIEVKGRGNIFIRLKNGEHQLISNV 158
           K+ V+G+GN+ IRLKNGEHQ ISNV
Sbjct: 369 KVAVEGKGNVLIRLKNGEHQFISNV 392

[Close]
BLAST of MELO3C010078 vs. TrEMBL
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_033991 PE=4 SV=1)

HSP 1 Score: 42.4 bits (98), Expect = 6.2e-01
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 

Query: 1   MTIEQLMGSLQAYEEKKKKKESRINFSSYTLIEELVPI-IELDKDENA 48
           M+IEQL+GSLQAYEEKKKKKE         ++E++    ++  K+ENA
Sbjct: 185 MSIEQLLGSLQAYEEKKKKKEE--------IVEQVFKAHVDSRKEENA 224


HSP 2 Score: 100.1 bits (248), Expect = 2.5e-18
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 73  EDRETQQKVVNRATQGQSKWSKDKTWYLDTGASNHMRGVKSMFVELDELVSDNLAFDNES 132
           E+R  +   +  A +GQ K  +D  WYLD+GASNHM G +SMFVELDE V  N+AF +ES
Sbjct: 309 EERCQEDGTLLLAYKGQDK-GEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDES 368

Query: 133 KIEVKGRGNIFIRLKNGEHQLISNV 158
           K+ V+G+GN+ IRLKNGEHQ ISNV
Sbjct: 369 KVAVEGKGNVLIRLKNGEHQFISNV 392

[Close]
BLAST of MELO3C010078 vs. NCBI nr
Match: gi|6552735|gb|AAF16534.1|AC013482_8 (T26F17.17 [Arabidopsis thaliana])

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-19
Identity = 74/181 (40.88%), Postives = 93/181 (51.38%), Query Frame = 1 

Query: 1   MTIEQLMGSLQAYEEKKKKKESRINFSSYTLIEELVPIIELDKDENADIKDEE---EDKE 60
           MTIEQL+GSLQAYEEKKKKKE          I E V  + + K+EN          E + 
Sbjct: 185 MTIEQLLGSLQAYEEKKKKKED---------IVEQVLNMRITKEENGQSYQRRGGGEVRG 244

Query: 61  KDVVGGLVKTTITTKEDRETQQKVVNRATQGQSKWSKDKTWYLDT--------------- 120
           +   G          ED   Q+   N+  + ++ + ++K    D                
Sbjct: 245 RGRGGYGNGRGWRPHEDNTNQRAPSNKKFEEKANYVEEKIQEEDMLLMASYKKDEQEENH 304

Query: 121 ------GASNHMRGVKSMFVELDELVSDNLAFDNESKIEVKGRGNIFIRLKNGEHQLISN 158
                 GASNHM G KSMF ELDE V  N+A  +ESK+EVKG+GNI IRLKNG+HQ ISN
Sbjct: 305 KWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISN 356

[Close]
BLAST of MELO3C010078 vs. NCBI nr
Match: gi|1012333128|gb|KYP44533.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 100.1 bits (248), Expect = 3.6e-18
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 73  EDRETQQKVVNRATQGQSKWSKDKTWYLDTGASNHMRGVKSMFVELDELVSDNLAFDNES 132
           E+R  +   +  A +GQ K  +D  WYLD+GASNHM G +SMFVELDE V  N+AF +ES
Sbjct: 309 EERCQEDGTLLLAYKGQDK-GEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDES 368

Query: 133 KIEVKGRGNIFIRLKNGEHQLISNV 158
           K+ V+G+GN+ IRLKNGEHQ ISNV
Sbjct: 369 KVAVEGKGNVLIRLKNGEHQFISNV 392

[Close]
BLAST of MELO3C010078 vs. NCBI nr
Match: gi|1012333128|gb|KYP44533.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 42.4 bits (98), Expect = 8.8e-01
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 

Query: 1   MTIEQLMGSLQAYEEKKKKKESRINFSSYTLIEELVPI-IELDKDENA 48
           M+IEQL+GSLQAYEEKKKKKE         ++E++    ++  K+ENA
Sbjct: 185 MSIEQLLGSLQAYEEKKKKKEE--------IVEQVFKAHVDSRKEENA 224


HSP 2 Score: 100.1 bits (248), Expect = 3.6e-18
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 73  EDRETQQKVVNRATQGQSKWSKDKTWYLDTGASNHMRGVKSMFVELDELVSDNLAFDNES 132
           E+R  +   +  A +GQ K  +D  WYLD+GASNHM G +SMFVELDE V  N+AF +ES
Sbjct: 309 EERCQEDGTLLLAYKGQDK-GEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDES 368

Query: 133 KIEVKGRGNIFIRLKNGEHQLISNV 158
           K+ V+G+GN+ IRLKNGEHQ ISNV
Sbjct: 369 KVAVEGKGNVLIRLKNGEHQFISNV 392

[Close]
BLAST of MELO3C010078 vs. NCBI nr
Match: gi|1012357856|gb|KYP69041.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 42.4 bits (98), Expect = 8.8e-01
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 

Query: 1   MTIEQLMGSLQAYEEKKKKKESRINFSSYTLIEELVPI-IELDKDENA 48
           M+IEQL+GSLQAYEEKKKKKE         ++E++    ++  K+ENA
Sbjct: 185 MSIEQLLGSLQAYEEKKKKKEE--------IVEQVFKAHVDSRKEENA 224


HSP 2 Score: 100.1 bits (248), Expect = 3.6e-18
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 73  EDRETQQKVVNRATQGQSKWSKDKTWYLDTGASNHMRGVKSMFVELDELVSDNLAFDNES 132
           E+R  +   +  A +GQ K  +D  WYLD+GASNHM G +SMFVELDE V  N+AF +ES
Sbjct: 254 EERCQEDGTLLLAYKGQDK-GEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDES 313

Query: 133 KIEVKGRGNIFIRLKNGEHQLISNV 158
           K+ V+G+GN+ IRLKNGEHQ ISNV
Sbjct: 314 KVAVEGKGNVLIRLKNGEHQFISNV 337

[Close]
BLAST of MELO3C010078 vs. NCBI nr
Match: gi|1012355032|gb|KYP66219.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 100.1 bits (248), Expect = 3.6e-18
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 73  EDRETQQKVVNRATQGQSKWSKDKTWYLDTGASNHMRGVKSMFVELDELVSDNLAFDNES 132
           E+R  +   +  A +GQ K  +D  WYLD+GASNHM G +SMFVELDE V  N+AF +ES
Sbjct: 243 EERCQEDGTLLLAYKGQDK-GEDNQWYLDSGASNHMCGKRSMFVELDESVKGNVAFGDES 302

Query: 133 KIEVKGRGNIFIRLKNGEHQLISNV 158
           K+ V+G+GN+ IRLKNGEHQ ISNV
Sbjct: 303 KVAVEGKGNVLIRLKNGEHQFISNV 326

The following BLAST results are available for this feature:
BLAST of MELO3C010078 vs. TrEMBL
Match NameE-valueIdentityDescription
Q9SFE1_ARATH1.7e-1940.88T26F17.17 OS=Arabidopsis thaliana PE=4 SV=1[more]
A0A151QP37_CAJCA2.5e-1858.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151R7G0_CAJCA2.5e-1858.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151RPT4_CAJCA2.5e-1858.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151RPT4_CAJCA6.2e-0150.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
BLAST of MELO3C010078 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|6552735|gb|AAF16534.1|AC013482_82.5e-1940.88T26F17.17 [Arabidopsis thaliana][more]
gi|1012333128|gb|KYP44533.1|3.6e-1858.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012333128|gb|KYP44533.1|8.8e-0150.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012357856|gb|KYP69041.1|8.8e-0150.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012355032|gb|KYP66219.1|3.6e-1858.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010078T1MELO3C010078T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 3..23
scor
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 92..157
score: 2.0E-16coord: 1..61
score: 2.0
NoneNo IPR availablePANTHERPTHR11439:SF127SUBFAMILY NOT NAMEDcoord: 92..157
score: 2.0E-16coord: 1..61
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010078Bottle gourd (USVL1VR-Ls)lsimeB398
MELO3C010078Cucumber (Gy14) v2cgybmeB040
MELO3C010078Cucumber (Chinese Long) v3cucmeB044
MELO3C010078Watermelon (97103) v2mewmbB244
MELO3C010078Wax gourdmewgoB300
MELO3C010078Cucumber (Gy14) v1cgymeB574
MELO3C010078Cucurbita maxima (Rimu)cmameB107
MELO3C010078Cucurbita moschata (Rifu)cmomeB099
MELO3C010078Wild cucumber (PI 183967)cpimeB044
MELO3C010078Cucumber (Chinese Long) v2cumeB043
MELO3C010078Watermelon (Charleston Gray)mewcgB239
MELO3C010078Watermelon (97103) v1mewmB263