MELO3C010068 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010068
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	BHLH transcription factor
Location	chr2 : 12228910 .. 12229551 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGAAGAAACCAGACAATCTCTTCTTTACGCCATTAGATCAAAAGAAGATACCTCTTCTCAAACCGAGTCCTTTTTCGATGAAGACGGGATCAACATCCTCAATGATGGAGGATCCTCTAACGAAGAGGCCTTCTACTCTCCAAGCGATTCAAACAGTGATGAAGAAGCAATTTCCTGCAAGGAAAAATGTGCTGGTAGATGCTCTAGTCACATCAATGTCATCACGAAAGATCAAGAAACCCTTTTTGATCTTATCGAGCAACTTCCCGATGAGAATTCAAAGCGAACCTGCCTTTTCAAACTCAGACAGAGTGTTGAAGAATGGAATTCTCAAAAGACGGAAAAAAGTTCGATTATATACTCATATCAAGATATATTAAATCAGATCAAAGGCGAAGTCAAAAGGTCTATTCAAGTCGAAGACCTTCACTCTGAAGTAAAGGTTCTCAAAAGAGAAGTTGCAGACAATAAGCAACGTCTCACCCTTCTTAAACAAGTCTTCCAAGAATTTCAAGAAGGTCAAAGTTCTAATGAAGCTCCAGGCACTTCCTCAACTAATCCCGAAAGACAATTTACGGGAAAAGCACTGTTGATTGAAGAACCCGGTGAGACCAGCAGTATCAATTACATCAGCTAA

mRNA sequence

ATGGGCGAAGAAACCAGACAATCTCTTCTTTACGCCATTAGATCAAAAGAAGATACCTCTTCTCAAACCGAGTCCTTTTTCGATGAAGACGGGATCAACATCCTCAATGATGGAGGATCCTCTAACGAAGAGGCCTTCTACTCTCCAAGCGATTCAAACAGTGATGAAGAAGCAATTTCCTGCAAGGAAAAATGTGCTGGTAGATGCTCTAGTCACATCAATGTCATCACGAAAGATCAAGAAACCCTTTTTGATCTTATCGAGCAACTTCCCGATGAGAATTCAAAGCGAACCTGCCTTTTCAAACTCAGACAGAGTGTTGAAGAATGGAATTCTCAAAAGACGGAAAAAAGTTCGATTATATACTCATATCAAGATATATTAAATCAGATCAAAGGCGAAGTCAAAAGGTCTATTCAAGTCGAAGACCTTCACTCTGAAGTAAAGGTTCTCAAAAGAGAAGTTGCAGACAATAAGCAACGTCTCACCCTTCTTAAACAAGTCTTCCAAGAATTTCAAGAAGGTCAAAGTTCTAATGAAGCTCCAGGCACTTCCTCAACTAATCCCGAAAGACAATTTACGGGAAAAGCACTGTTGATTGAAGAACCCGGTGAGACCAGCAGTATCAATTACATCAGCTAA

Coding sequence (CDS)

ATGGGCGAAGAAACCAGACAATCTCTTCTTTACGCCATTAGATCAAAAGAAGATACCTCTTCTCAAACCGAGTCCTTTTTCGATGAAGACGGGATCAACATCCTCAATGATGGAGGATCCTCTAACGAAGAGGCCTTCTACTCTCCAAGCGATTCAAACAGTGATGAAGAAGCAATTTCCTGCAAGGAAAAATGTGCTGGTAGATGCTCTAGTCACATCAATGTCATCACGAAAGATCAAGAAACCCTTTTTGATCTTATCGAGCAACTTCCCGATGAGAATTCAAAGCGAACCTGCCTTTTCAAACTCAGACAGAGTGTTGAAGAATGGAATTCTCAAAAGACGGAAAAAAGTTCGATTATATACTCATATCAAGATATATTAAATCAGATCAAAGGCGAAGTCAAAAGGTCTATTCAAGTCGAAGACCTTCACTCTGAAGTAAAGGTTCTCAAAAGAGAAGTTGCAGACAATAAGCAACGTCTCACCCTTCTTAAACAAGTCTTCCAAGAATTTCAAGAAGGTCAAAGTTCTAATGAAGCTCCAGGCACTTCCTCAACTAATCCCGAAAGACAATTTACGGGAAAAGCACTGTTGATTGAAGAACCCGGTGAGACCAGCAGTATCAATTACATCAGCTAA

Protein sequence

MGEETRQSLLYAIRSKEDTSSQTESFFDEDGINILNDGGSSNEEAFYSPSDSNSDEEAISCKEKCAGRCSSHINVITKDQETLFDLIEQLPDENSKRTCLFKLRQSVEEWNSQKTEKSSIIYSYQDILNQIKGEVKRSIQVEDLHSEVKVLKREVADNKQRLTLLKQVFQEFQEGQSSNEAPGTSSTNPERQFTGKALLIEEPGETSSINYIS*

Homology

[Close]

BLAST of MELO3C010068 vs. TrEMBL
Match: A0A0A0LWY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385030 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-56
Identity = 120/188 (63.83%), Postives = 142/188 (75.53%), Query Frame = 1


Query: 3   EETRQSLLYAIRSKEDTSSQTESFFDEDGINILNDGGSSNEEAFYSPSDSNSDEEAISCK 62
           EET+QSLLYAIRS +D SSQTES  +ED IN+L + GSS++E F+S SDS+ DE AI C 
Sbjct: 198 EETKQSLLYAIRSDDDDSSQTESSLEEDFINVLQEEGSSSKEEFFSQSDSSDDEGAIPCT 257

Query: 63  EKCAGRCSSHINVITKDQETLFDLIEQLPDENSKRTCLFKLRQSVEEWNSQKTEKSSIIY 122
            +CAG    HINVITKDQETLFDLIEQ+PDE +KRTCL KLRQS+EE   ++T  S I+Y
Sbjct: 258 RQCAG----HINVITKDQETLFDLIEQIPDETAKRTCLLKLRQSIEEQTPRQTVHSPIMY 317

Query: 123 SYQDILNQIKGEVKRSIQVEDLHSEVKVLKREVADNKQRLTLLKQVFQEFQEGQSSNEAP 182
           SYQ+ILN+IKGE K  IQV DLH EVK+LK+EVA+NKQRLT L+  FQ FQE     E  
Sbjct: 318 SYQNILNRIKGETKMPIQVNDLHHEVKILKKEVANNKQRLTYLENAFQAFQESPIREEYL 377

Query: 183 GTSSTNPE 191
            TS  N E
Sbjct: 378 ETSINNFE 381

[Close]

BLAST of MELO3C010068 vs. TrEMBL
Match: A0A0A0M024_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.6e-39
Identity = 88/136 (64.71%), Postives = 107/136 (78.68%), Query Frame = 1


Query: 3   EETRQSLLYAIRSKEDTSSQTESFFDEDGINILNDGGSSNEEAFYSPSDSNSDEEAISCK 62
           EET+QSLLYAIRS +D SSQTES   ED IN+L +  SS+EE F+S SDS+ DE AI C 
Sbjct: 552 EETKQSLLYAIRSDDDNSSQTESSSKEDIINVLQEERSSSEEEFFSQSDSSDDEGAIPCT 611

Query: 63  EKCAGRCSSHINVITKDQETLFDLIEQLPDENSKRTCLFKLRQSVEEWNSQKTEKSSIIY 122
            +CAG    HINVITKDQETLFDLI+Q+PDE +K+TCL KLRQS+EE   Q+T  SSI+Y
Sbjct: 612 RQCAG----HINVITKDQETLFDLIDQIPDETAKKTCLLKLRQSIEEQTPQQTVHSSIMY 671

Query: 123 SYQDILNQIKGEVKRS 139
           SYQ+ILN+IKG+ K +
Sbjct: 672 SYQNILNRIKGQNKNA 683

[Close]

BLAST of MELO3C010068 vs. TrEMBL
Match: A5C9V7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038387 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-09
Identity = 48/164 (29.27%), Postives = 91/164 (55.49%), Query Frame = 1


Query: 1   MGEETRQSLLYAIRSKEDTSSQTESFFDEDGINILNDGGSSNEEAFYSPSDSNSDEEAIS 60
           + ++ +  L   + +  D+ S+T+S  +ED IN L+  G  +       S S+SD++ + 
Sbjct: 824 VSDDLKNMLCKVMLNSTDSESRTDSD-NEDDINQLDSSGDVS-------SQSSSDQD-VC 883

Query: 61  CKEKCAGRCSSHINVITKDQETLFDLIEQLPDENSKRTCLFKLRQSVEEWNSQKTEKSSI 120
            K  C  R  + INVI++DQE + D + ++ DE +K+      ++SV +  ++KT     
Sbjct: 884 IKGNCNCRPKT-INVISQDQEFILDTLRKVEDEKTKQNLYEVFKKSVVKVEAKKTVNP-- 943

Query: 121 IYSYQDILNQIKGEVKRSIQVEDLHSEVKVLKREVADNKQRLTL 165
            Y+  DILN+   +  + + +++LH EVK  K+E+ + KQ ++L
Sbjct: 944 -YNLNDILNRFDQQSPKEVSIKELHEEVKQHKKEIKELKQFISL 974

[Close]

BLAST of MELO3C010068 vs. TrEMBL
Match: A5AF01_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024646 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 46/150 (30.67%), Postives = 86/150 (57.33%), Query Frame = 1


Query: 15  SKEDTSSQTESFFDEDGINILNDGGSSNEEAFYSPSDSNSDEEAISCKEKCAGRCSSHIN 74
           SK D+ S+T+S  ++D IN L+  G  +       S S+SD++ +  K  C  R  + IN
Sbjct: 290 SKRDSESRTDSDIEDD-INQLDSSGDVS-------SQSSSDQD-VRIKGNCNCRPKT-IN 349

Query: 75  VITKDQETLFDLIEQLPDENSKRTCLFKLRQSVEEWNSQKTEKSSIIYSYQDILNQIKGE 134
           +I++DQE + D + ++ DE +K+      ++SV +  ++KT      Y+  DILN+   +
Sbjct: 350 IISQDQEFILDTLRKVEDEKTKQNLYEVFKKSVVKVEAKKTVNX---YNLNDILNRFDQQ 409

Query: 135 VKRSIQVEDLHSEVKVLKREVADNKQRLTL 165
             + + +++LH EVK  K+E+ + +Q ++L
Sbjct: 410 SPKDVSIKELHEEVKQHKKEIKELRQFISL 426

[Close]

BLAST of MELO3C010068 vs. TrEMBL
Match: A5AVM9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007186 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-09
Identity = 47/164 (28.66%), Postives = 91/164 (55.49%), Query Frame = 1


Query: 1   MGEETRQSLLYAIRSKEDTSSQTESFFDEDGINILNDGGSSNEEAFYSPSDSNSDEEAIS 60
           + ++ +  L   + +  D+ S+T+S  +ED IN L+  G  +       S S+SD++ + 
Sbjct: 86  VSDDLKNMLCKVMLNSSDSESRTDSD-NEDDINQLDSSGDVS-------SQSSSDQD-VC 145

Query: 61  CKEKCAGRCSSHINVITKDQETLFDLIEQLPDENSKRTCLFKLRQSVEEWNSQKTEKSSI 120
            K  C  R  + INVI++DQE + D + ++ DE +K+      ++SV +  ++KT     
Sbjct: 146 IKGNCNCRPKT-INVISQDQEFILDTLRKVEDEKTKQNLYEVFKKSVVKVEAKKTVNP-- 205

Query: 121 IYSYQDILNQIKGEVKRSIQVEDLHSEVKVLKREVADNKQRLTL 165
            Y+  DILN+   +  + + +++LH EVK  K+E+ + +Q ++L
Sbjct: 206 -YNLNDILNRFDQQSPKDVSIKELHEEVKQHKKEIKELRQFISL 236

[Close]

BLAST of MELO3C010068 vs. NCBI nr
Match: gi|700210271|gb|KGN65367.1| (hypothetical protein Csa_1G385030 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 2.0e-56
Identity = 120/188 (63.83%), Postives = 142/188 (75.53%), Query Frame = 1


Query: 3   EETRQSLLYAIRSKEDTSSQTESFFDEDGINILNDGGSSNEEAFYSPSDSNSDEEAISCK 62
           EET+QSLLYAIRS +D SSQTES  +ED IN+L + GSS++E F+S SDS+ DE AI C 
Sbjct: 198 EETKQSLLYAIRSDDDDSSQTESSLEEDFINVLQEEGSSSKEEFFSQSDSSDDEGAIPCT 257

Query: 63  EKCAGRCSSHINVITKDQETLFDLIEQLPDENSKRTCLFKLRQSVEEWNSQKTEKSSIIY 122
            +CAG    HINVITKDQETLFDLIEQ+PDE +KRTCL KLRQS+EE   ++T  S I+Y
Sbjct: 258 RQCAG----HINVITKDQETLFDLIEQIPDETAKRTCLLKLRQSIEEQTPRQTVHSPIMY 317

Query: 123 SYQDILNQIKGEVKRSIQVEDLHSEVKVLKREVADNKQRLTLLKQVFQEFQEGQSSNEAP 182
           SYQ+ILN+IKGE K  IQV DLH EVK+LK+EVA+NKQRLT L+  FQ FQE     E  
Sbjct: 318 SYQNILNRIKGETKMPIQVNDLHHEVKILKKEVANNKQRLTYLENAFQAFQESPIREEYL 377

Query: 183 GTSSTNPE 191
            TS  N E
Sbjct: 378 ETSINNFE 381

[Close]

BLAST of MELO3C010068 vs. NCBI nr
Match: gi|659128065|ref|XP_008464028.1| (PREDICTED: uncharacterized protein LOC103502012 [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 1.0e-55
Identity = 113/163 (69.33%), Postives = 135/163 (82.82%), Query Frame = 1


Query: 3   EETRQSLLYAIRSKEDTSSQTESFFDEDGINILNDGGSSNEEAFYSPSDSNSDEEAISCK 62
           EET+QSLLYAI+S +DTSSQTES  +ED INIL + GSS+E+ FYS S+S+ DE AI C 
Sbjct: 370 EETKQSLLYAIKSDDDTSSQTESSSEEDYINILQEEGSSSEDEFYSQSESSDDEGAIPCT 429

Query: 63  EKCAGRCSSHINVITKDQETLFDLIEQLPDENSKRTCLFKLRQSVEEWNSQKTEKSSIIY 122
            +CAG+CS HINVITKDQ+TLFDLIEQ+PD  +KRTCL KLRQS+EE   QKT ++ I++
Sbjct: 430 GRCAGKCSGHINVITKDQKTLFDLIEQIPDVEAKRTCLLKLRQSLEEQMPQKTIQNPIMH 489

Query: 123 SYQDILNQIKGEVKRSIQVEDLHSEVKVLKREVADNKQRLTLL 166
           SYQDILN++KGE K  IQVEDLH EVK+LKREVADNKQRL  L
Sbjct: 490 SYQDILNRVKGETKMPIQVEDLHHEVKILKREVADNKQRLIYL 532

[Close]

BLAST of MELO3C010068 vs. NCBI nr
Match: gi|700210425|gb|KGN65521.1| (hypothetical protein Csa_1G434190 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 88/136 (64.71%), Postives = 107/136 (78.68%), Query Frame = 1


Query: 3   EETRQSLLYAIRSKEDTSSQTESFFDEDGINILNDGGSSNEEAFYSPSDSNSDEEAISCK 62
           EET+QSLLYAIRS +D SSQTES   ED IN+L +  SS+EE F+S SDS+ DE AI C 
Sbjct: 552 EETKQSLLYAIRSDDDNSSQTESSSKEDIINVLQEERSSSEEEFFSQSDSSDDEGAIPCT 611

Query: 63  EKCAGRCSSHINVITKDQETLFDLIEQLPDENSKRTCLFKLRQSVEEWNSQKTEKSSIIY 122
            +CAG    HINVITKDQETLFDLI+Q+PDE +K+TCL KLRQS+EE   Q+T  SSI+Y
Sbjct: 612 RQCAG----HINVITKDQETLFDLIDQIPDETAKKTCLLKLRQSIEEQTPQQTVHSSIMY 671

Query: 123 SYQDILNQIKGEVKRS 139
           SYQ+ILN+IKG+ K +
Sbjct: 672 SYQNILNRIKGQNKNA 683

[Close]

BLAST of MELO3C010068 vs. NCBI nr
Match: gi|147792749|emb|CAN75456.1| (hypothetical protein VITISV_038387 [Vitis vinifera])

HSP 1 Score: 71.2 bits (173), Expect = 2.4e-09
Identity = 48/164 (29.27%), Postives = 91/164 (55.49%), Query Frame = 1


Query: 1   MGEETRQSLLYAIRSKEDTSSQTESFFDEDGINILNDGGSSNEEAFYSPSDSNSDEEAIS 60
           + ++ +  L   + +  D+ S+T+S  +ED IN L+  G  +       S S+SD++ + 
Sbjct: 824 VSDDLKNMLCKVMLNSTDSESRTDSD-NEDDINQLDSSGDVS-------SQSSSDQD-VC 883

Query: 61  CKEKCAGRCSSHINVITKDQETLFDLIEQLPDENSKRTCLFKLRQSVEEWNSQKTEKSSI 120
            K  C  R  + INVI++DQE + D + ++ DE +K+      ++SV +  ++KT     
Sbjct: 884 IKGNCNCRPKT-INVISQDQEFILDTLRKVEDEKTKQNLYEVFKKSVVKVEAKKTVNP-- 943

Query: 121 IYSYQDILNQIKGEVKRSIQVEDLHSEVKVLKREVADNKQRLTL 165
            Y+  DILN+   +  + + +++LH EVK  K+E+ + KQ ++L
Sbjct: 944 -YNLNDILNRFDQQSPKEVSIKELHEEVKQHKKEIKELKQFISL 974

[Close]

BLAST of MELO3C010068 vs. NCBI nr
Match: gi|147844440|emb|CAN80005.1| (hypothetical protein VITISV_024646 [Vitis vinifera])

HSP 1 Score: 70.9 bits (172), Expect = 3.1e-09
Identity = 46/150 (30.67%), Postives = 86/150 (57.33%), Query Frame = 1


Query: 15  SKEDTSSQTESFFDEDGINILNDGGSSNEEAFYSPSDSNSDEEAISCKEKCAGRCSSHIN 74
           SK D+ S+T+S  ++D IN L+  G  +       S S+SD++ +  K  C  R  + IN
Sbjct: 290 SKRDSESRTDSDIEDD-INQLDSSGDVS-------SQSSSDQD-VRIKGNCNCRPKT-IN 349

Query: 75  VITKDQETLFDLIEQLPDENSKRTCLFKLRQSVEEWNSQKTEKSSIIYSYQDILNQIKGE 134
           +I++DQE + D + ++ DE +K+      ++SV +  ++KT      Y+  DILN+   +
Sbjct: 350 IISQDQEFILDTLRKVEDEKTKQNLYEVFKKSVVKVEAKKTVNX---YNLNDILNRFDQQ 409

Query: 135 VKRSIQVEDLHSEVKVLKREVADNKQRLTL 165
             + + +++LH EVK  K+E+ + +Q ++L
Sbjct: 410 SPKDVSIKELHEEVKQHKKEIKELRQFISL 426

The following BLAST results are available for this feature:

BLAST of MELO3C010068 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWY2_CUCSA	1.4e-56	63.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385030 PE=4 SV=1	[more]
A0A0A0M024_CUCSA	2.6e-39	64.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434190 PE=4 SV=1	[more]
A5C9V7_VITVI	1.7e-09	29.27	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038387 PE=4 SV=1	[more]
A5AF01_VITVI	2.2e-09	30.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024646 PE=4 SV=1	[more]
A5AVM9_VITVI	2.9e-09	28.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007186 PE=4 SV=1	[more]

BLAST of MELO3C010068 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210271\|gb\|KGN65367.1\|	2.0e-56	63.83	hypothetical protein Csa_1G385030 [Cucumis sativus]	[more]
gi\|659128065\|ref\|XP_008464028.1\|	1.0e-55	69.33	PREDICTED: uncharacterized protein LOC103502012 [Cucumis melo]	[more]
gi\|700210425\|gb\|KGN65521.1\|	3.8e-39	64.71	hypothetical protein Csa_1G434190 [Cucumis sativus]	[more]
gi\|147792749\|emb\|CAN75456.1\|	2.4e-09	29.27	hypothetical protein VITISV_038387 [Vitis vinifera]	[more]
gi\|147844440\|emb\|CAN80005.1\|	3.1e-09	30.67	hypothetical protein VITISV_024646 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010068T1	MELO3C010068T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 141..161 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010068	Cucumber (Chinese Long) v3	cucmeB044
MELO3C010068	Watermelon (97103) v2	mewmbB244
MELO3C010068	Wax gourd	mewgoB300
MELO3C010068	Cucumber (Gy14) v1	cgymeB574
MELO3C010068	Cucurbita maxima (Rimu)	cmameB069
MELO3C010068	Cucurbita maxima (Rimu)	cmameB107
MELO3C010068	Cucurbita moschata (Rifu)	cmomeB061
MELO3C010068	Cucurbita moschata (Rifu)	cmomeB099
MELO3C010068	Wild cucumber (PI 183967)	cpimeB044
MELO3C010068	Cucumber (Chinese Long) v2	cumeB043
MELO3C010068	Watermelon (Charleston Gray)	mewcgB239
MELO3C010068	Watermelon (97103) v1	mewmB263
MELO3C010068	Cucurbita pepo (Zucchini)	cpemeB007
MELO3C010068	Cucurbita pepo (Zucchini)	cpemeB332
MELO3C010068	Bottle gourd (USVL1VR-Ls)	lsimeB398
MELO3C010068	Cucumber (Gy14) v2	cgybmeB040
MELO3C010068	Silver-seed gourd	carmeB0946