MELO3C010063 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010063
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr2 : 12132075 .. 12132531 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGCCCAGCAGATAGTGGCTTTGGCTGGAACGATGACGTCAAGTGCATCATCGCTAAGAGGGACGTGTTCGATCATTGGGTCCGGGTAAGAGTATGAACATAATTATATGACTAACTGGATTTTATGGAATACTAAATGCTTTGTTATTTTTTTTTTTGTTGTTTTTTTCCAGACGCACCCTATAGCAGAAGGACTCCTAAACAAGCCATTTCTGCATTACGACGCACTGTCTTACGTGTTCGAAAAAGATCGAGCCACGAAGGCCCGTGTGAAGACCTTTGCAGACATCAGTTTAAACGTGTCGGCCAGCTACGATAGTGTCCCCACAGAGGATGGCCTCGACATGGAGTTCCCCGCTATGTGCAATCCGAGGATAAACATGTCCCCTAAGGACATAATGGGCGGTAGATCAGGCCGGTCGAGTGATGGTAGAACGGGCTCTAGCAGATAG

mRNA sequence

ATGAGGAGCCCAGCAGATAGTGGCTTTGGCTGGAACGATGACGTCAAGTGCATCATCGCTAAGAGGGACGTGTTCGATCATTGGGTCCGGACGCACCCTATAGCAGAAGGACTCCTAAACAAGCCATTTCTGCATTACGACGCACTGTCTTACGTGTTCGAAAAAGATCGAGCCACGAAGGCCCGTGTGAAGACCTTTGCAGACATCAGTTTAAACGTGTCGGCCAGCTACGATAGTGTCCCCACAGAGGATGGCCTCGACATGGAGTTCCCCGCTATGTGCAATCCGAGGATAAACATGTCCCCTAAGGACATAATGGGCGGTAGATCAGGCCGGTCGAGTGATGGTAGAACGGGCTCTAGCAGATAG

Coding sequence (CDS)

ATGAGGAGCCCAGCAGATAGTGGCTTTGGCTGGAACGATGACGTCAAGTGCATCATCGCTAAGAGGGACGTGTTCGATCATTGGGTCCGGACGCACCCTATAGCAGAAGGACTCCTAAACAAGCCATTTCTGCATTACGACGCACTGTCTTACGTGTTCGAAAAAGATCGAGCCACGAAGGCCCGTGTGAAGACCTTTGCAGACATCAGTTTAAACGTGTCGGCCAGCTACGATAGTGTCCCCACAGAGGATGGCCTCGACATGGAGTTCCCCGCTATGTGCAATCCGAGGATAAACATGTCCCCTAAGGACATAATGGGCGGTAGATCAGGCCGGTCGAGTGATGGTAGAACGGGCTCTAGCAGATAG

Protein sequence

MRSPADSGFGWNDDVKCIIAKRDVFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATKARVKTFADISLNVSASYDSVPTEDGLDMEFPAMCNPRINMSPKDIMGGRSGRSSDGRTGSSR*
Homology
[Close]
BLAST of MELO3C010063 vs. TrEMBL
Match: A0A0A0KQ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 69/120 (57.50%), Postives = 85/120 (70.83%), Query Frame = 1 

Query: 1   MRSPADSGFGWNDDVKCIIAKRDVFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATK 60
           MR PA SGF WN D+KCIIA+RD+FD+WVRT+P  +GLLNK F HY  LSYVF KD  TK
Sbjct: 28  MREPAGSGFEWNGDMKCIIAERDMFDNWVRTYPATKGLLNKVFPHYGMLSYVFGKDH-TK 87

Query: 61  ARVKTFADISLNVSASYDS-VPTEDGLDMEFPAMCNPRINMSPKDIMGGRSGRSSDGRTG 120
             V  ++  S        + VPTEDGL +EFP MC+PR+N+S  D+M G+SGR SD R+G
Sbjct: 88  GPVWRYSRTSGPTCKDPSACVPTEDGLKIEFPTMCSPRMNLSLDDMMVGQSGRFSDCRSG 146

[Close]
BLAST of MELO3C010063 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.0e-28
Identity = 65/121 (53.72%), Postives = 83/121 (68.60%), Query Frame = 1 

Query: 1   MRSPADSGFGWNDDVKCIIAKRDVFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATK 60
           MR P  SGFGWND+ KCI+A+++VFD W  +HP A+GLLNK F+HYD LSYVF KDRAT 
Sbjct: 438 MRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRATG 497

Query: 61  ARVKTFADISLNVSASYDSVPTEDGLDMEFPAMCNPRINMSPKDIMGGRSGRSSDGRTGS 120
            R ++FADI  N    YD+   +   D +FP M +P +NMSP D+M  R+ R S+ R  S
Sbjct: 498 GRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS 556

Query: 121 S 122
           S
Sbjct: 558 S 556

[Close]
BLAST of MELO3C010063 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-23
Identity = 57/122 (46.72%), Postives = 82/122 (67.21%), Query Frame = 1 

Query: 1   MRSPADSGFGWNDDVKCIIAKRDVFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATK 60
           M  PA SGFGWND+ KCI+A++++FD+WVR+ P A+GLLN PF +YD L+YVF +DRAT 
Sbjct: 401 MLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATG 460

Query: 61  ARVKTFADISLN-VSASYDSVPTEDGLDMEFPAMCNPRINMSPKDIMGGRSGRSSDGRTG 120
              +TFAD+  N     YD     DG + +FP + +  +++   D+   R  R+S+G+TG
Sbjct: 461 RFAETFADVGSNEPGGGYDRFDMGDG-NEDFPPVYSRGVDILQDDVRASRPSRASEGKTG 520

Query: 121 SS 122
           SS
Sbjct: 521 SS 521

[Close]
BLAST of MELO3C010063 vs. TrEMBL
Match: A0A0A9TMG5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.1e-13
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 1 

Query: 1   MRSPADSGFGWNDDVKCIIAKRDVFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATK 60
           M  P+  GFGWND  KCI+  +D+FD+WV+ HP A GL NKPF + + LS VF KDRAT 
Sbjct: 91  MLEPSAGGFGWNDKDKCIVCDKDIFDNWVKGHPSARGLSNKPFPYLEKLSIVFVKDRATG 150

Query: 61  ARVKTFADI 70
              ++ AD+
Sbjct: 151 EAAESPADV 159

[Close]
BLAST of MELO3C010063 vs. TrEMBL
Match: A0A072UYX1_MEDTR (Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.1e-11
Identity = 43/135 (31.85%), Postives = 65/135 (48.15%), Query Frame = 1 

Query: 1   MRSPADSGFGWNDDVKCIIAKRDVFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATK 60
           M  P+ SGFGWND  K I+ +++V+  W ++HP A GL  KPF HY+ L  VF KD+A  
Sbjct: 88  MLGPSASGFGWNDATKTIVVEKEVYRQWCKSHPNATGLFGKPFPHYERLHNVFGKDKACG 147

Query: 61  ARVKTFADISLNVSASY--DSVPTEDGLDMEF----------------PAMCNPRINMSP 118
              +  AD + N+   +   S   E  +D+                        ++N S 
Sbjct: 148 DTSEDPADHAYNIVKEFFPSSPRNEFDIDLNLGEENFESQISETATYNTTQVPSQVNQSQ 207

[Close]
BLAST of MELO3C010063 vs. NCBI nr
Match: gi|659112453|ref|XP_008456229.1| (PREDICTED: uncharacterized protein LOC103496234 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-28
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1 

Query: 1   MRSPADSGFGWNDDVKCIIAKRDVFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATK 60
           M  P  +GFGWND+ KCI+A+++VFD WV++H  A+GL NK FLHYD LSYVF KDRAT 
Sbjct: 83  MYGPTCNGFGWNDEQKCIVAEKEVFDDWVKSHLAAKGLFNKSFLHYDELSYVFSKDRATG 142

Query: 61  ARVKTFADISLNVSASYDSVPTEDGLDMEFPAMCNPRINMSPKDIMGGRSGRSSDGRTGS 120
            R ++FAD+  N    Y++  T    D +F  M N R+NMSP ++MG ++ R S+GR  S
Sbjct: 143 GRTESFADVGSNDPTGYETFATVAASDTDFQPMYNQRLNMSPGELMGTKTARVSEGRYVS 202

Query: 121 S 122
           S
Sbjct: 203 S 203

[Close]
BLAST of MELO3C010063 vs. NCBI nr
Match: gi|659111306|ref|XP_008455685.1| (PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-28
Identity = 63/121 (52.07%), Postives = 81/121 (66.94%), Query Frame = 1 

Query: 1   MRSPADSGFGWNDDVKCIIAKRDVFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATK 60
           MR P  SGFGWND+ KCI+ +++VFD WV++HP+A+GLLNK F HYD   YVF KDRAT 
Sbjct: 257 MRGPTCSGFGWNDEQKCIVTEKEVFDDWVKSHPVAKGLLNKSFPHYDERLYVFGKDRATG 316

Query: 61  ARVKTFADISLNVSASYDSVPTEDGLDMEFPAMCNPRINMSPKDIMGGRSGRSSDGRTGS 120
            R K+FAD+  N    YD+   +   D +FP M +  +NMSP D+MG R  R S+ R  S
Sbjct: 317 GRAKSFADVGSNNPVGYDAFVADATPDTDFPPMYSQGLNMSPDDLMGTRITRVSERRNVS 376

Query: 121 S 122
           S
Sbjct: 377 S 377

[Close]
BLAST of MELO3C010063 vs. NCBI nr
Match: gi|700195822|gb|KGN50999.1| (hypothetical protein Csa_5G387990 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 3.0e-28
Identity = 69/120 (57.50%), Postives = 85/120 (70.83%), Query Frame = 1 

Query: 1   MRSPADSGFGWNDDVKCIIAKRDVFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATK 60
           MR PA SGF WN D+KCIIA+RD+FD+WVRT+P  +GLLNK F HY  LSYVF KD  TK
Sbjct: 28  MREPAGSGFEWNGDMKCIIAERDMFDNWVRTYPATKGLLNKVFPHYGMLSYVFGKDH-TK 87

Query: 61  ARVKTFADISLNVSASYDS-VPTEDGLDMEFPAMCNPRINMSPKDIMGGRSGRSSDGRTG 120
             V  ++  S        + VPTEDGL +EFP MC+PR+N+S  D+M G+SGR SD R+G
Sbjct: 88  GPVWRYSRTSGPTCKDPSACVPTEDGLKIEFPTMCSPRMNLSLDDMMVGQSGRFSDCRSG 146

[Close]
BLAST of MELO3C010063 vs. NCBI nr
Match: gi|659133916|ref|XP_008466949.1| (PREDICTED: uncharacterized protein At2g29880-like, partial [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 6.6e-28
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 1 

Query: 1   MRSPADSGFGWNDDVKCIIAKRDVFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATK 60
           MR P  SGFGWND+ KCI+A+++VFD WV++HP A+GLLNK F+HYD LSYVF KDRAT 
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPTAKGLLNKSFVHYDELSYVFGKDRATG 138

Query: 61  ARVKTFADISLNVSASYDSVPTEDGLDMEFPAMCNPRINMSPKDIMGGRS 111
            R ++FADI  N    YD+   +   D +FP M + R+NMSP D+M  R+
Sbjct: 139 GRAESFADIGSNDPPGYDAFAADAMPDTDFPPMYSLRLNMSPDDLMETRT 188

[Close]
BLAST of MELO3C010063 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 131.7 bits (330), Expect = 8.6e-28
Identity = 65/121 (53.72%), Postives = 83/121 (68.60%), Query Frame = 1 

Query: 1   MRSPADSGFGWNDDVKCIIAKRDVFDHWVRTHPIAEGLLNKPFLHYDALSYVFEKDRATK 60
           MR P  SGFGWND+ KCI+A+++VFD W  +HP A+GLLNK F+HYD LSYVF KDRAT 
Sbjct: 438 MRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRATG 497

Query: 61  ARVKTFADISLNVSASYDSVPTEDGLDMEFPAMCNPRINMSPKDIMGGRSGRSSDGRTGS 120
            R ++FADI  N    YD+   +   D +FP M +P +NMSP D+M  R+ R S+ R  S
Sbjct: 498 GRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVS 556

Query: 121 S 122
           S
Sbjct: 558 S 556

The following BLAST results are available for this feature:
BLAST of MELO3C010063 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ83_CUCSA2.1e-2857.50Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1[more]
E5GCB5_CUCME6.0e-2853.72Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB2_CUCME1.2e-2346.72Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A9TMG5_ARUDO7.1e-1352.17Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A072UYX1_MEDTR5.1e-1131.85Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 ... [more]
BLAST of MELO3C010063 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112453|ref|XP_008456229.1|1.3e-2851.24PREDICTED: uncharacterized protein LOC103496234 [Cucumis melo][more]
gi|659111306|ref|XP_008455685.1|1.7e-2852.07PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo][more]
gi|700195822|gb|KGN50999.1|3.0e-2857.50hypothetical protein Csa_5G387990 [Cucumis sativus][more]
gi|659133916|ref|XP_008466949.1|6.6e-2855.45PREDICTED: uncharacterized protein At2g29880-like, partial [Cucumis melo][more]
gi|307136287|gb|ADN34114.1|8.6e-2853.72retrotransposon protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010063T1MELO3C010063T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010063Cucurbita pepo (Zucchini)cpemeB007
MELO3C010063Cucurbita pepo (Zucchini)cpemeB332
MELO3C010063Bottle gourd (USVL1VR-Ls)lsimeB398
MELO3C010063Cucumber (Gy14) v2cgybmeB040
MELO3C010063Silver-seed gourdcarmeB0540
MELO3C010063Silver-seed gourdcarmeB0946
MELO3C010063Cucumber (Chinese Long) v3cucmeB044
MELO3C010063Watermelon (97103) v2mewmbB244
MELO3C010063Wax gourdmewgoB300
MELO3C010063Cucumber (Gy14) v1cgymeB574
MELO3C010063Cucurbita maxima (Rimu)cmameB069
MELO3C010063Cucurbita maxima (Rimu)cmameB107
MELO3C010063Cucurbita moschata (Rifu)cmomeB061
MELO3C010063Cucurbita moschata (Rifu)cmomeB099
MELO3C010063Wild cucumber (PI 183967)cpimeB044
MELO3C010063Cucumber (Chinese Long) v2cumeB043
MELO3C010063Watermelon (Charleston Gray)mewcgB239
MELO3C010063Watermelon (97103) v1mewmB263