MELO3C010034 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010034
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Resistance protein
Location	chr2 : 11358138 .. 11358442 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGCGCATCGAAGAGCTTAATTGTTCCCATGCCAAAGTTGTTCAGCAACCTGTCATACGACTTTAGAGCAACGATCGAGACAATCAAGGTCGAGATGTTCGAGATGAAAATGCAAGTAAATTTGACGATGCAAGCAGTAGGGAACCAGACCCTGAATCAAGTATATAATGTTTCGAGTAGGCTCAAGATCCTGGAACATAAGGCCTTCAATGAGAACTCTGATGCTAAAGAGCTTGAAAATTTAATCTTTGATATGGAGCAGTACTTTAAGGCTAGTGGATCCAATTCTGAGAAACCAAG

mRNA sequence

ATGGAAAGCGCATCGAAGAGCTTAATTGTTCCCATGCCAAAGTTGTTCAGCAACCTGTCATACGACTTTAGAGCAACGATCGAGACAATCAAGGTCGAGATGTTCGAGATGAAAATGCAAGTAAATTTGACGATGCAAGCAGTAGGGAACCAGACCCTGAATCAAGTATATAATGTTTCGAGTAGGCTCAAGATCCTGGAACATAAGGCCTTCAATGAGAACTCTGATGCTAAAGAGCTTGAAAATTTAATCTTTGATATGGAGCAGTACTTTAAGGCTAGTGGATCCAATTCTGAGAAACCAAG

Coding sequence (CDS)

ATGGAAAGCGCATCGAAGAGCTTAATTGTTCCCATGCCAAAGTTGTTCAGCAACCTGTCATACGACTTTAGAGCAACGATCGAGACAATCAAGGTCGAGATGTTCGAGATGAAAATGCAAGTAAATTTGACGATGCAAGCAGTAGGGAACCAGACCCTGAATCAAGTATATAATGTTTCGAGTAGGCTCAAGATCCTGGAACATAAGGCCTTCAATGAGAACTCTGATGCTAAAGAGCTTGAAAATTTAATCTTTGATATGGAGCAGTACTTTAAGGCTAGTGGATCCAATTCTGAGAAACCAAG

Protein sequence

MESASKSLIVPMPKLFSNLSYDFRATIETIKVEMFEMKMQVNLTMQAVGNQTLNQVYNVSSRLKILEHKAFNENSDAKELENLIFDMEQYFKASGSNSEKP

Homology

[Close]

BLAST of MELO3C010034 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-11
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 2   ESASKSLIVPMPKLFSNLSYDFRATIETIKVEMFEMKMQVNLTMQAVGNQTLNQVYNVSS 61
           + A +  I  +    + L+ DFRAT+E +K+EM ++  ++ +TM+AV N+    V     
Sbjct: 256 DGAMEEAIERLMSTVNELTEDFRATVEALKIEMGQINTKLAITMRAVENRPAVPVGGDYG 315

Query: 62  RLKILEHKAFNENSDAKELENLIFDMEQYFKASGSNSEK 101
           R+K+ E +A+    DAKELEN +FDMEQYF+A   +SE+
Sbjct: 316 RMKVPEPRAYGGARDAKELENFLFDMEQYFRAIKPDSEE 354

[Close]

BLAST of MELO3C010034 vs. NCBI nr
Match: gi|1009165187|ref|XP_015900908.1| (PREDICTED: uncharacterized protein LOC107434012 [Ziziphus jujuba])

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-11
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 2   ESASKSLIVPMPKLFSNLSYDFRATIETIKVEMFEMKMQVNLTMQAVGNQTLNQVYNVSS 61
           + A +  I  +    + L+ DFRAT+E +K+EM ++  ++ +TM+AV N+    V     
Sbjct: 74  DGAMEEAIERLMSTVNELTEDFRATVEALKIEMGQINTKLAITMRAVENRPAVPVGGDYG 133

Query: 62  RLKILEHKAFNENSDAKELENLIFDMEQYFKASGSNSEK 101
           R+K+ E +A+    DAKELEN +FDMEQYF+A   +SE+
Sbjct: 134 RMKVPEPRAYGGARDAKELENFLFDMEQYFRAIKPDSEE 172

[Close]

BLAST of MELO3C010034 vs. NCBI nr
Match: gi|1009161113|ref|XP_015898721.1| (PREDICTED: uncharacterized protein LOC107432159 [Ziziphus jujuba])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 2   ESASKSLIVPMPKLFSNLSYDFRATIETIKVEMFEMKMQVNLTMQAVGNQTLNQVYNVSS 61
           + A +  I  +    + L+ +F+AT+E +K+EM ++  ++ +TM+AV N+    +     
Sbjct: 67  DGAMEEAIERLMSTVNELTEEFQATVEALKIEMGQINTKLAITMRAVENRPAVPMGGDYG 126

Query: 62  RLKILEHKAFNENSDAKELENLIFDMEQYFKASGSNSEK 101
           R+K+ E +A+    DAKELEN +FDMEQYF+A   +SE+
Sbjct: 127 RMKVPEPRAYGGARDAKELENFLFDMEQYFRAIKPDSEE 165

The following BLAST results are available for this feature:

BLAST of MELO3C010034 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009175511\|ref\|XP_015868924.1\|	6.0e-11	39.39	PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba]	[more]
gi\|1009165187\|ref\|XP_015900908.1\|	6.0e-11	39.39	PREDICTED: uncharacterized protein LOC107434012 [Ziziphus jujuba]	[more]
gi\|1009161113\|ref\|XP_015898721.1\|	1.1e-09	36.36	PREDICTED: uncharacterized protein LOC107432159 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010034T1	MELO3C010034T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 63..83 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010034	Cucumber (Gy14) v2	cgybmeB040
MELO3C010034	Silver-seed gourd	carmeB0540
MELO3C010034	Silver-seed gourd	carmeB0946
MELO3C010034	Cucumber (Chinese Long) v3	cucmeB044
MELO3C010034	Watermelon (97103) v2	mewmbB244
MELO3C010034	Wax gourd	mewgoB315
MELO3C010034	Cucumber (Gy14) v1	cgymeB574
MELO3C010034	Cucurbita maxima (Rimu)	cmameB069
MELO3C010034	Cucurbita maxima (Rimu)	cmameB107
MELO3C010034	Cucurbita moschata (Rifu)	cmomeB061
MELO3C010034	Cucurbita moschata (Rifu)	cmomeB099
MELO3C010034	Wild cucumber (PI 183967)	cpimeB044
MELO3C010034	Cucumber (Chinese Long) v2	cumeB043
MELO3C010034	Watermelon (Charleston Gray)	mewcgB239
MELO3C010034	Watermelon (97103) v1	mewmB263
MELO3C010034	Cucurbita pepo (Zucchini)	cpemeB007
MELO3C010034	Cucurbita pepo (Zucchini)	cpemeB332
MELO3C010034	Bottle gourd (USVL1VR-Ls)	lsimeB398