MELO3C010026.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010026.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Vacuolar protein sorting-associated protein, putative (DUF1162)
Location	chr02 : 12071490 .. 12071789 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGGGAACTACTGGTTTCTGTTCGTTATAACGAACCTGGGTGGCAATGGTCTGGCAGTTTCATACCTGATCAACTTGGCGATACTCTTGTGAAAATGCGAAATTATATCACTGGTTCTTCAAAAGTTCTTAGAATTGAAGTTCAGAATGTTGATGTATCAATTGACAATAAGATTGTTGGAAATGGTCATGGAAATTTAGGGACAAATTTGATTCTCCTGTCGGATGATGACACCGGATATGTACCTTACAGAATAGATAACTTTTCAAAGGAGGTAGGTGACATTGTTCCTTAA

mRNA sequence

ATGATCAGGGAACTACTGGTTTCTGTTCGTTATAACGAACCTGGGTGGCAATGGTCTGGCAGTTTCATACCTGATCAACTTGGCGATACTCTTGTGAAAATGCGAAATTATATCACTGGTTCTTCAAAAGTTCTTAGAATTGAAGTTCAGAATGTTGATGTATCAATTGACAATAAGATTGTTGGAAATGGTCATGGAAATTTAGGGACAAATTTGATTCTCCTGTCGGATGATGACACCGGATATGTACCTTACAGAATAGATAACTTTTCAAAGGAGGTAGGTGACATTGTTCCTTAA

Coding sequence (CDS)

ATGATCAGGGAACTACTGGTTTCTGTTCGTTATAACGAACCTGGGTGGCAATGGTCTGGCAGTTTCATACCTGATCAACTTGGCGATACTCTTGTGAAAATGCGAAATTATATCACTGGTTCTTCAAAAGTTCTTAGAATTGAAGTTCAGAATGTTGATGTATCAATTGACAATAAGATTGTTGGAAATGGTCATGGAAATTTAGGGACAAATTTGATTCTCCTGTCGGATGATGACACCGGATATGTACCTTACAGAATAGATAACTTTTCAAAGGAGGTAGGTGACATTGTTCCTTAA

Protein sequence

MIRELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKEVGDIVP

Homology

[Close]

BLAST of MELO3C010026.2 vs. NCBI nr
Match: XP_008443665.1 (PREDICTED: uncharacterized protein LOC103487213 isoform X1 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 6.4e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 62
            RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG
Sbjct: 1216 RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 1275

Query: 63   NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Sbjct: 1276 NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 1306

[Close]

BLAST of MELO3C010026.2 vs. NCBI nr
Match: XP_008443666.1 (PREDICTED: uncharacterized protein LOC103487213 isoform X2 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 6.4e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 62
            RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG
Sbjct: 1216 RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 1275

Query: 63   NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Sbjct: 1276 NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 1306

[Close]

BLAST of MELO3C010026.2 vs. NCBI nr
Match: XP_011660209.1 (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 3.5e-44
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 62
            RELLVSVRYN+PGWQWSGSFIPDQLGDTLVKMRNYIT SSKVLRIEVQNVDVS DNKIVG
Sbjct: 2599 RELLVSVRYNKPGWQWSGSFIPDQLGDTLVKMRNYITSSSKVLRIEVQNVDVSTDNKIVG 2658

Query: 63   NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Sbjct: 2659 NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 2689

[Close]

BLAST of MELO3C010026.2 vs. NCBI nr
Match: XP_011660210.1 (PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 3.5e-44
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 62
            RELLVSVRYN+PGWQWSGSFIPDQLGDTLVKMRNYIT SSKVLRIEVQNVDVS DNKIVG
Sbjct: 2599 RELLVSVRYNKPGWQWSGSFIPDQLGDTLVKMRNYITSSSKVLRIEVQNVDVSTDNKIVG 2658

Query: 63   NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Sbjct: 2659 NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 2689

[Close]

BLAST of MELO3C010026.2 vs. NCBI nr
Match: XP_022960657.1 (uncharacterized protein LOC111461381 isoform X1 [Cucurbita moschata])

HSP 1 Score: 185.7 bits (470), Expect = 7.9e-44
Identity = 88/91 (96.70%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 62
            RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSS VLRIEVQNVDVS DNKIVG
Sbjct: 2619 RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSYVLRIEVQNVDVSTDNKIVG 2678

Query: 63   NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            NGHGN GTNLILLSDDDTGYVPYRIDNFSKE
Sbjct: 2679 NGHGNSGTNLILLSDDDTGYVPYRIDNFSKE 2709

[Close]

BLAST of MELO3C010026.2 vs. TAIR10
Match: AT5G24740.1 (Protein of unknown function (DUF1162))

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-32
Identity = 61/92 (66.30%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKIV 62
            RELLVS+R NEPGWQWSGSF+PD LGDT +K+ NY+  +  ++R+EVQN ++S  D KIV
Sbjct: 2580 RELLVSIRLNEPGWQWSGSFLPDHLGDTQLKIWNYVNKAFNMVRVEVQNANMSSGDEKIV 2639

Query: 63   GNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            G+ HG++GTN ILLSDDD GY+PYRIDNFS E
Sbjct: 2640 GSVHGHVGTNFILLSDDDMGYMPYRIDNFSNE 2671

[Close]

BLAST of MELO3C010026.2 vs. TrEMBL
Match: tr|A0A1S3B9B2|A0A1S3B9B2_CUCME (uncharacterized protein LOC103487213 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487213 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.3e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 62
            RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG
Sbjct: 1216 RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 1275

Query: 63   NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Sbjct: 1276 NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 1306

[Close]

BLAST of MELO3C010026.2 vs. TrEMBL
Match: tr|A0A1S3B8M2|A0A1S3B8M2_CUCME (uncharacterized protein LOC103487213 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487213 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.3e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 62
            RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG
Sbjct: 1216 RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 1275

Query: 63   NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Sbjct: 1276 NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 1306

[Close]

BLAST of MELO3C010026.2 vs. TrEMBL
Match: tr|A0A067KXR1|A0A067KXR1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02743 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.9e-36
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 2   IRELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKI 61
           +RELLVS+R+NEPGWQWSGSF+PD LGDT VKMRNYI+GS  ++R+EVQN DVSI D KI
Sbjct: 729 MRELLVSIRFNEPGWQWSGSFLPDHLGDTQVKMRNYISGSLNMVRVEVQNADVSIRDEKI 788

Query: 62  VGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
           VG+ HGN GTNLILLSDDDTG++PYRIDNFSKE
Sbjct: 789 VGSLHGNSGTNLILLSDDDTGFMPYRIDNFSKE 821

[Close]

BLAST of MELO3C010026.2 vs. TrEMBL
Match: tr|A0A2P5F083|A0A2P5F083_9ROSA (Vacuolar protein sorting-associated protein OS=Trema orientalis OX=63057 GN=TorRG33x02_130050 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.4e-35
Identity = 70/93 (75.27%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKIV 62
            RELL+SV+YNEPGWQWSGSF+PD LGDT VKM+NY++GSS ++R+EVQN DVS+ D K+V
Sbjct: 1975 RELLISVKYNEPGWQWSGSFLPDHLGDTQVKMQNYVSGSSTIIRVEVQNADVSVRDEKVV 2034

Query: 63   GNGHGNLGTNLILLSDDDTGYVPYRIDNFSKEV 95
            G+ HG+ GT LILLSDDDTGYVPYRIDNFS EV
Sbjct: 2035 GSLHGDSGTTLILLSDDDTGYVPYRIDNFSMEV 2067

[Close]

BLAST of MELO3C010026.2 vs. TrEMBL
Match: tr|A0A2P4LIH6|A0A2P4LIH6_QUESU (Putative vacuolar protein sorting-associated protein 13e OS=Quercus suber OX=58331 GN=CFP56_67463 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.4e-35
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKIV 62
            RELLVSVRYNEPGWQWSGSF+PD LGDT VK+RNY++ +  ++R+EVQN DVSI D K+V
Sbjct: 2624 RELLVSVRYNEPGWQWSGSFLPDHLGDTQVKLRNYVSNALNMVRVEVQNADVSIQDEKVV 2683

Query: 63   GNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            G+ HGN GTNLILLSDDDTGY+PYRIDNFSKE
Sbjct: 2684 GSLHGNSGTNLILLSDDDTGYMPYRIDNFSKE 2715

The following BLAST results are available for this feature:

BLAST of MELO3C010026.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443665.1	6.4e-46	100.00	PREDICTED: uncharacterized protein LOC103487213 isoform X1 [Cucumis melo]	[more]
XP_008443666.1	6.4e-46	100.00	PREDICTED: uncharacterized protein LOC103487213 isoform X2 [Cucumis melo]	[more]
XP_011660209.1	3.5e-44	96.70	PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus]	[more]
XP_011660210.1	3.5e-44	96.70	PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus]	[more]
XP_022960657.1	7.9e-44	96.70	uncharacterized protein LOC111461381 isoform X1 [Cucurbita moschata]	[more]

BLAST of MELO3C010026.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24740.1	1.7e-32	66.30	Protein of unknown function (DUF1162)	[more]

BLAST of MELO3C010026.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C010026.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B9B2\|A0A1S3B9B2_CUCME	4.3e-46	100.00	uncharacterized protein LOC103487213 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B8M2\|A0A1S3B8M2_CUCME	4.3e-46	100.00	uncharacterized protein LOC103487213 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A067KXR1\|A0A067KXR1_JATCU	8.9e-36	78.49	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02743 PE=4 SV=1	[more]
tr\|A0A2P5F083\|A0A2P5F083_9ROSA	3.4e-35	75.27	Vacuolar protein sorting-associated protein OS=Trema orientalis OX=63057 GN=TorR...	[more]
tr\|A0A2P4LIH6\|A0A2P4LIH6_QUESU	4.4e-35	77.17	Putative vacuolar protein sorting-associated protein 13e OS=Quercus suber OX=583...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026847	VPS13
IPR009543	SHR-BD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010026.2.1	MELO3C010026.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009543	Vacuolar protein sorting-associated protein 13, SHR-binding domain	PFAM	PF06650	SHR-BD	coord: 7..59 e-value: 5.2E-5 score: 22.6
None	No IPR available	PANTHER	PTHR16166:SF108	SUBFAMILY NOT NAMED	coord: 33..83
IPR026847	Vacuolar protein sorting-associated protein 13	PANTHER	PTHR16166	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	coord: 33..83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010026.2	Bhi02G001106	Wax gourd	medwgoB310

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010026.2	Cucumber (Gy14) v2	cgybmedB034
MELO3C010026.2	Cucumber (Gy14) v1	cgymedB575
MELO3C010026.2	Cucurbita maxima (Rimu)	cmamedB072
MELO3C010026.2	Cucurbita maxima (Rimu)	cmamedB114
MELO3C010026.2	Cucurbita moschata (Rifu)	cmomedB064
MELO3C010026.2	Cucurbita moschata (Rifu)	cmomedB107
MELO3C010026.2	Cucurbita pepo (Zucchini)	cpemedB008
MELO3C010026.2	Cucurbita pepo (Zucchini)	cpemedB390
MELO3C010026.2	Wild cucumber (PI 183967)	cpimedB038
MELO3C010026.2	Cucumber (Chinese Long) v2	cumedB035
MELO3C010026.2	Bottle gourd (USVL1VR-Ls)	lsimedB420
MELO3C010026.2	Watermelon (Charleston Gray)	medwcgB230
MELO3C010026.2	Watermelon (97103) v1	medwmB254
MELO3C010026.2	Silver-seed gourd	carmedB0545
MELO3C010026.2	Silver-seed gourd	carmedB0952
MELO3C010026.2	Cucumber (Chinese Long) v3	cucmedB041
MELO3C010026.2	Watermelon (97103) v2	medwmbB229