MELO3C010026 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010026
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Vacuolar protein sorting-associated protein, putative
Location	chr2 : 11269768 .. 11270067 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGGGAACTACTGGTTTCTGTTCGTTATAACGAACCTGGGTGGCAATGGTCTGGCAGTTTCATACCTGATCAACTTGGCGATACTCTTGTGAAAATGCGAAATTATATCACTGGTTCTTCAAAAGTTCTTAGAATTGAAGTTCAGAATGTTGATGTATCAATTGACAATAAGATTGTTGGAAATGGTCATGGAAATTTAGGGACAAATTTGATTCTCCTGTCGGATGATGACACCGGATATGTACCTTACAGAATAGATAACTTTTCAAAGGAGGTAGGTGACATTGTTCCTTAA

mRNA sequence

ATGATCAGGGAACTACTGGTTTCTGTTCGTTATAACGAACCTGGGTGGCAATGGTCTGGCAGTTTCATACCTGATCAACTTGGCGATACTCTTGTGAAAATGCGAAATTATATCACTGGTTCTTCAAAAGTTCTTAGAATTGAAGTTCAGAATGTTGATGTATCAATTGACAATAAGATTGTTGGAAATGGTCATGGAAATTTAGGGACAAATTTGATTCTCCTGTCGGATGATGACACCGGATATGTACCTTACAGAATAGATAACTTTTCAAAGGAGGTAGGTGACATTGTTCCTTAA

Coding sequence (CDS)

ATGATCAGGGAACTACTGGTTTCTGTTCGTTATAACGAACCTGGGTGGCAATGGTCTGGCAGTTTCATACCTGATCAACTTGGCGATACTCTTGTGAAAATGCGAAATTATATCACTGGTTCTTCAAAAGTTCTTAGAATTGAAGTTCAGAATGTTGATGTATCAATTGACAATAAGATTGTTGGAAATGGTCATGGAAATTTAGGGACAAATTTGATTCTCCTGTCGGATGATGACACCGGATATGTACCTTACAGAATAGATAACTTTTCAAAGGAGGTAGGTGACATTGTTCCTTAA

Protein sequence

MIRELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKEVGDIVP*

Homology

[Close]

BLAST of MELO3C010026 vs. TrEMBL
Match: A0A067KXR1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02743 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.0e-35
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 2   IRELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKI 61
           +RELLVS+R+NEPGWQWSGSF+PD LGDT VKMRNYI+GS  ++R+EVQN DVSI D KI
Sbjct: 729 MRELLVSIRFNEPGWQWSGSFLPDHLGDTQVKMRNYISGSLNMVRVEVQNADVSIRDEKI 788

Query: 62  VGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
           VG+ HGN GTNLILLSDDDTG++PYRIDNFSKE
Sbjct: 789 VGSLHGNSGTNLILLSDDDTGFMPYRIDNFSKE 821

[Close]

BLAST of MELO3C010026 vs. TrEMBL
Match: W9QCI9_9ROSA (Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L484_010461 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.0e-34
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = 1


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKIV 62
            RELLVSVRYNEPGWQWSGSF+PD LGDT VKM+NY++GSS V+R+E+QN DVS+ D K+V
Sbjct: 2442 RELLVSVRYNEPGWQWSGSFLPDHLGDTQVKMQNYVSGSSSVIRVEMQNADVSVRDEKVV 2501

Query: 63   GNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            G+ HG+ GT LILLSDDDTGY+PY+IDNFSKE
Sbjct: 2502 GSLHGDSGTMLILLSDDDTGYMPYKIDNFSKE 2533

[Close]

BLAST of MELO3C010026 vs. TrEMBL
Match: M5XBH4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000018mg PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-33
Identity = 68/91 (74.73%), Postives = 80/91 (87.91%), Query Frame = 1


Query: 4    ELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKIVG 63
            ELLVS+RY+EPGWQWSG F+PD LGDT VKMRNY++GS  ++R+EVQN DVS+ D KIVG
Sbjct: 1704 ELLVSIRYDEPGWQWSGGFLPDHLGDTQVKMRNYLSGSLNMIRVEVQNADVSMGDEKIVG 1763

Query: 64   NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            N HGN GTNLIL+SDD+TGY+PYRIDNFS E
Sbjct: 1764 NFHGNSGTNLILISDDETGYMPYRIDNFSNE 1794

[Close]

BLAST of MELO3C010026 vs. TrEMBL
Match: A0A151UAH9_CAJCA (Putative vacuolar protein sorting-associated protein 13A OS=Cajanus cajan GN=KK1_020551 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 8.6e-33
Identity = 69/92 (75.00%), Postives = 81/92 (88.04%), Query Frame = 1


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKIV 62
            RELLVS+ YNE GWQWSGSF+PD LGDTL+KMRN++ G+S ++R+EVQN D+S+ D KIV
Sbjct: 2432 RELLVSICYNESGWQWSGSFLPDHLGDTLLKMRNFVFGTSNMIRVEVQNADISMGDEKIV 2491

Query: 63   GNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            GN  GN GTNLILLSDDDTGY+PYRIDNFSKE
Sbjct: 2492 GNIKGNSGTNLILLSDDDTGYMPYRIDNFSKE 2523

[Close]

BLAST of MELO3C010026 vs. TrEMBL
Match: V4SQR3_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100108862mg PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 8.6e-33
Identity = 68/92 (73.91%), Postives = 82/92 (89.13%), Query Frame = 1


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKIV 62
            REL+VS+R+NEPGWQWSGSF+PD LGDT +KMRNY++G   ++R+E+QN DVSI D KIV
Sbjct: 2013 RELVVSIRFNEPGWQWSGSFLPDHLGDTQLKMRNYVSGRLSMIRVEMQNADVSIRDEKIV 2072

Query: 63   GNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            G+ +GN GTNLILLSDDDTGY+PYRIDNFSKE
Sbjct: 2073 GSLNGNSGTNLILLSDDDTGYMPYRIDNFSKE 2104

[Close]

BLAST of MELO3C010026 vs. TAIR10
Match: AT5G24740.1 (AT5G24740.1 Protein of unknown function (DUF1162))

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-31
Identity = 61/92 (66.30%), Postives = 74/92 (80.43%), Query Frame = 1


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKIV 62
            RELLVS+R NEPGWQWSGSF+PD LGDT +K+ NY+  +  ++R+EVQN ++S  D KIV
Sbjct: 2580 RELLVSIRLNEPGWQWSGSFLPDHLGDTQLKIWNYVNKAFNMVRVEVQNANMSSGDEKIV 2639

Query: 63   GNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            G+ HG++GTN ILLSDDD GY+PYRIDNFS E
Sbjct: 2640 GSVHGHVGTNFILLSDDDMGYMPYRIDNFSNE 2671

[Close]

BLAST of MELO3C010026 vs. NCBI nr
Match: gi|659085900|ref|XP_008443666.1| (PREDICTED: uncharacterized protein LOC103487213 isoform X2 [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 4.8e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 62
            RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG
Sbjct: 1216 RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 1275

Query: 63   NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Sbjct: 1276 NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 1306

[Close]

BLAST of MELO3C010026 vs. NCBI nr
Match: gi|659085898|ref|XP_008443665.1| (PREDICTED: uncharacterized protein LOC103487213 isoform X1 [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 4.8e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 62
            RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG
Sbjct: 1216 RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 1275

Query: 63   NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Sbjct: 1276 NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 1306

[Close]

BLAST of MELO3C010026 vs. NCBI nr
Match: gi|778664067|ref|XP_011660210.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-43
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 62
            RELLVSVRYN+PGWQWSGSFIPDQLGDTLVKMRNYIT SSKVLRIEVQNVDVS DNKIVG
Sbjct: 2599 RELLVSVRYNKPGWQWSGSFIPDQLGDTLVKMRNYITSSSKVLRIEVQNVDVSTDNKIVG 2658

Query: 63   NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Sbjct: 2659 NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 2689

[Close]

BLAST of MELO3C010026 vs. NCBI nr
Match: gi|778664064|ref|XP_011660209.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-43
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 3    RELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSIDNKIVG 62
            RELLVSVRYN+PGWQWSGSFIPDQLGDTLVKMRNYIT SSKVLRIEVQNVDVS DNKIVG
Sbjct: 2599 RELLVSVRYNKPGWQWSGSFIPDQLGDTLVKMRNYITSSSKVLRIEVQNVDVSTDNKIVG 2658

Query: 63   NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
            NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE
Sbjct: 2659 NGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 2689

[Close]

BLAST of MELO3C010026 vs. NCBI nr
Match: gi|643732627|gb|KDP39723.1| (hypothetical protein JCGZ_02743 [Jatropha curcas])

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 2   IRELLVSVRYNEPGWQWSGSFIPDQLGDTLVKMRNYITGSSKVLRIEVQNVDVSI-DNKI 61
           +RELLVS+R+NEPGWQWSGSF+PD LGDT VKMRNYI+GS  ++R+EVQN DVSI D KI
Sbjct: 729 MRELLVSIRFNEPGWQWSGSFLPDHLGDTQVKMRNYISGSLNMVRVEVQNADVSIRDEKI 788

Query: 62  VGNGHGNLGTNLILLSDDDTGYVPYRIDNFSKE 94
           VG+ HGN GTNLILLSDDDTG++PYRIDNFSKE
Sbjct: 789 VGSLHGNSGTNLILLSDDDTGFMPYRIDNFSKE 821

The following BLAST results are available for this feature:

BLAST of MELO3C010026 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067KXR1_JATCU	7.0e-35	78.49	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02743 PE=4 SV=1	[more]
W9QCI9_9ROSA	6.0e-34	76.09	Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L...	[more]
M5XBH4_PRUPE	5.0e-33	74.73	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000018mg PE=4 SV=1	[more]
A0A151UAH9_CAJCA	8.6e-33	75.00	Putative vacuolar protein sorting-associated protein 13A OS=Cajanus cajan GN=KK1...	[more]
V4SQR3_9ROSI	8.6e-33	73.91	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100108862mg PE...	[more]

BLAST of MELO3C010026 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24740.1	2.5e-31	66.30	Protein of unknown function (DUF1162)	[more]

BLAST of MELO3C010026 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085900\|ref\|XP_008443666.1\|	4.8e-45	100.00	PREDICTED: uncharacterized protein LOC103487213 isoform X2 [Cucumis melo]	[more]
gi\|659085898\|ref\|XP_008443665.1\|	4.8e-45	100.00	PREDICTED: uncharacterized protein LOC103487213 isoform X1 [Cucumis melo]	[more]
gi\|778664067\|ref\|XP_011660210.1\|	2.6e-43	96.70	PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus]	[more]
gi\|778664064\|ref\|XP_011660209.1\|	2.6e-43	96.70	PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus]	[more]
gi\|643732627\|gb\|KDP39723.1\|	1.0e-34	78.49	hypothetical protein JCGZ_02743 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009543	SHR-BD
IPR026847	VPS13

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008168	methyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010026T1	MELO3C010026T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009543	Vacuolar protein sorting-associated protein 13, SHR-binding domain	PFAM	PF06650	SHR-BD	coord: 7..58 score: 4.
IPR026847	Vacuolar protein sorting-associated protein 13	PANTHER	PTHR16166	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	coord: 69..93 score: 1.3E-43coord: 3..53 score: 1.3
None	No IPR available	PANTHER	PTHR16166:SF87	SUBFAMILY NOT NAMED	coord: 3..53 score: 1.3E-43coord: 69..93 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010026	Bhi02G001106	Wax gourd	mewgoB315

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010026	Cucurbita moschata (Rifu)	cmomeB061
MELO3C010026	Cucurbita moschata (Rifu)	cmomeB099
MELO3C010026	Wild cucumber (PI 183967)	cpimeB044
MELO3C010026	Cucumber (Chinese Long) v2	cumeB043
MELO3C010026	Watermelon (Charleston Gray)	mewcgB239
MELO3C010026	Watermelon (97103) v1	mewmB263
MELO3C010026	Cucurbita pepo (Zucchini)	cpemeB007
MELO3C010026	Cucurbita pepo (Zucchini)	cpemeB332
MELO3C010026	Bottle gourd (USVL1VR-Ls)	lsimeB398
MELO3C010026	Cucumber (Gy14) v2	cgybmeB040
MELO3C010026	Silver-seed gourd	carmeB0540
MELO3C010026	Silver-seed gourd	carmeB0946
MELO3C010026	Cucumber (Chinese Long) v3	cucmeB044
MELO3C010026	Watermelon (97103) v2	mewmbB244
MELO3C010026	Cucumber (Gy14) v1	cgymeB574
MELO3C010026	Cucurbita maxima (Rimu)	cmameB069
MELO3C010026	Cucurbita maxima (Rimu)	cmameB107