MELO3C010020 (gene) Melon (DHL92) v3.5.1

NameMELO3C010020
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr2 : 11129800 .. 11130288 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACTCAAGGGATTAGTGAAGGATATGGAGGTGTTAATACTAATTGACAATGGGGCTACCTACAATTTCATTCAGCAAGCTGTAGTTGATGAGCTGGAACTAACAATTCTGAAAGGAACTACCTTGGAGGTAACCATTGGAGATGGATCTAACAAAAGAGGAAAAGGATTATGTCAAAGAGTGGAAGTGAAACTACCCGAGCTAACCATCATTGCTGACTATTTAATGGTTGAACTAGGAAGAGTAGACGTCATTTTAGGAATGCATTGGCTGAGTACCACATGCCTTGTGAAAATCCATTGGCCAACGTTAACTATGTCATTTAAGGTGGGAGACAAGAAAGTCACATTAAGAGGGGACCCTTCGTTAATCAAGGCAGAATACTCCTTGAAGACTTTCGCTAAAACTTCGAAAGAAGAAGACAAAGGCTTCCTATTAGAGTTCCCAAAGTTTGAAGTGGAGGAAGAACACGATTGTGATGAATAA

mRNA sequence

ATGAAACTCAAGGGATTAGTGAAGGATATGGAGGTGTTAATACTAATTGACAATGGGGCTACCTACAATTTCATTCAGCAAGCTGTAGTTGATGAGCTGGAACTAACAATTCTGAAAGGAACTACCTTGGAGGTAACCATTGGAGATGGATCTAACAAAAGAGGAAAAGGATTATGTCAAAGAGTGGAAGTGAAACTACCCGAGCTAACCATCATTGCTGACTATTTAATGGTTGAACTAGGAAGAGTAGACGTCATTTTAGGAATGCATTGGCTGAGTACCACATGCCTTGTGAAAATCCATTGGCCAACGTTAACTATGTCATTTAAGGTGGGAGACAAGAAAGTCACATTAAGAGGGGACCCTTCGTTAATCAAGGCAGAATACTCCTTGAAGACTTTCGCTAAAACTTCGAAAGAAGAAGACAAAGGCTTCCTATTAGAGTTCCCAAAGTTTGAAGTGGAGGAAGAACACGATTGTGATGAATAA

Coding sequence (CDS)

ATGAAACTCAAGGGATTAGTGAAGGATATGGAGGTGTTAATACTAATTGACAATGGGGCTACCTACAATTTCATTCAGCAAGCTGTAGTTGATGAGCTGGAACTAACAATTCTGAAAGGAACTACCTTGGAGGTAACCATTGGAGATGGATCTAACAAAAGAGGAAAAGGATTATGTCAAAGAGTGGAAGTGAAACTACCCGAGCTAACCATCATTGCTGACTATTTAATGGTTGAACTAGGAAGAGTAGACGTCATTTTAGGAATGCATTGGCTGAGTACCACATGCCTTGTGAAAATCCATTGGCCAACGTTAACTATGTCATTTAAGGTGGGAGACAAGAAAGTCACATTAAGAGGGGACCCTTCGTTAATCAAGGCAGAATACTCCTTGAAGACTTTCGCTAAAACTTCGAAAGAAGAAGACAAAGGCTTCCTATTAGAGTTCCCAAAGTTTGAAGTGGAGGAAGAACACGATTGTGATGAATAA

Protein sequence

MKLKGLVKDMEVLILIDNGATYNFIQQAVVDELELTILKGTTLEVTIGDGSNKRGKGLCQRVEVKLPELTIIADYLMVELGRVDVILGMHWLSTTCLVKIHWPTLTMSFKVGDKKVTLRGDPSLIKAEYSLKTFAKTSKEEDKGFLLEFPKFEVEEEHDCDE*
BLAST of MELO3C010020 vs. TrEMBL
Match: A5CAG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.6e-28
Identity = 63/148 (42.57%), Postives = 96/148 (64.86%), Query Frame = 1

Query: 1   MKLKGLVKDMEVLILIDNGATYNFIQQAVVDELELTILKGTTLEVTIGDGSNKRGKGLCQ 60
           MK+KG++   EV+IL+D+GAT+NF+   +V +L L +   T+ EV +G G + +GKG+C+
Sbjct: 1   MKIKGMIGSKEVIILVDSGATHNFLSLELVQQLALPLTTTTSYEVMMGTGISVKGKGICR 60

Query: 61  RVEVKLPELTIIADYLMVELGRVDVILGMHWLSTTCLVKIHWPTLTMSFKVGDKKVTLRG 120
            V + +  LT++ D+L +ELG  DVILGM WL T   VK++W  LTM  K+G   + L+G
Sbjct: 61  GVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKG 120

Query: 121 DPSLIKAEYSLKTFAKTSKEEDKGFLLE 149
           DPSL + E SLK   +  +   +G  +E
Sbjct: 121 DPSLSRIEVSLKAMTRALQHHSQGVWVE 148

BLAST of MELO3C010020 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.0e-27
Identity = 65/145 (44.83%), Postives = 93/145 (64.14%), Query Frame = 1

Query: 2   KLKGLVKDMEVLILIDNGATYNFIQQAVVDELELTILKGTTLEVTIGDGSNKRGKGLCQR 61
           K+KG V+D EV+++ID GAT+NFI   +V+E+++   + T   V +G G   +GKG+C  
Sbjct: 371 KIKGKVEDREVVVMIDCGATHNFISLRLVEEMQIATTETTQYGVIMGSGKAVQGKGMCTG 430

Query: 62  VEVKLPELTIIADYLMVELGRVDVILGMHWLSTTCLVKIHWPTLTMSFKVGDKKVTLRGD 121
           V V LP LT++ D+L +ELG +D++LGM WL     + + W  L M+F V D KV LRGD
Sbjct: 431 VVVGLPGLTVVEDFLPLELGHLDMVLGMQWLPKQGAMTVDWRNLAMTFAVRDVKVMLRGD 490

Query: 122 PSLIKAEYSLKTFAKTSKEEDKGFL 147
            SL +   SLK   K  + ED+GFL
Sbjct: 491 LSLTRMAISLKMLMKQWQPEDRGFL 515

BLAST of MELO3C010020 vs. TrEMBL
Match: F6GVT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 9.7e-26
Identity = 60/136 (44.12%), Postives = 90/136 (66.18%), Query Frame = 1

Query: 1   MKLKGLVKDMEVLILIDNGATYNFIQQAVVDELELTILKGTTLEVTIGDGSNKRGKGLCQ 60
           MK+KG ++  EV+IL+D+GAT+NF+   +V +L L +   T+  V +G G + +GKG+C+
Sbjct: 51  MKIKGTIRSKEVIILVDSGATHNFLSLELVQQLALPLTTITSYGVMMGIGISMKGKGICR 110

Query: 61  RVEVKLPELTIIADYLMVELGRVDVILGMHWLSTTCLVKIHWPTLTMSFKVGDKKVTLRG 120
            V + +  LT++ D+L +ELG  DVILGM WL T   VK++W  LTM  K+G   + L+ 
Sbjct: 111 GVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKR 170

Query: 121 DPSLIKAEYSLKTFAK 137
           DPSL + E SLK  A+
Sbjct: 171 DPSLSRTEVSLKAMAR 186

BLAST of MELO3C010020 vs. TrEMBL
Match: A0A087HF90_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G041600 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.2e-25
Identity = 61/155 (39.35%), Postives = 97/155 (62.58%), Query Frame = 1

Query: 1   MKLKGLVKDMEVLILIDNGATYNFIQQAVVDELELTILKGTTLEVTIGDGSNKRGKGLCQ 60
           +KL+G ++   ++++IDNGA++NFI + VV  L LT +  T+  V    G   +G+G+C+
Sbjct: 166 VKLRGTIRGESIVVMIDNGASHNFISEKVVTRLGLTAIDTTSYGVLTEGGITVQGRGVCK 225

Query: 61  RVEVKLPELTIIADYLMVELGRVDVILGMHWLSTTCLVKIHWPTLTMSFKVGDKKVTLRG 120
            VE+ L +L I+A +L +ELG  D ILG+ WL++   +K +W    +SF VG+K+V LRG
Sbjct: 226 DVELCLRDLVIVAPFLPLELGSADAILGIQWLASLGDMKCNWKLQKLSFMVGEKEVELRG 285

Query: 121 DPSLIKAEYSLKTFAKTSKEEDKGFLLEFPKFEVE 156
           DPSL  +  S+K   K    E +G ++EF   + E
Sbjct: 286 DPSLCCSPISMKGLWKALDREGQGVIIEFGGLQTE 320

BLAST of MELO3C010020 vs. TrEMBL
Match: A0A087FY99_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AAs54367U000800 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-24
Identity = 61/155 (39.35%), Postives = 97/155 (62.58%), Query Frame = 1

Query: 1   MKLKGLVKDMEVLILIDNGATYNFIQQAVVDELELTILKGTTLEVTIGDGSNKRGKGLCQ 60
           +KL+G ++   V+++ID+GA++NFI + VV  L LT    T+  V  G G   +G+G+C+
Sbjct: 229 VKLRGTIRGESVMVMIDSGASHNFISEQVVTRLGLTATDTTSYGVLSGGGITVQGRGVCK 288

Query: 61  RVEVKLPELTIIADYLMVELGRVDVILGMHWLSTTCLVKIHWPTLTMSFKVGDKKVTLRG 120
            VE+ L +L I+A +L +ELG  D ILG+ WL++   +K +W    +SF VG+++V LRG
Sbjct: 289 DVELCLQDLVIVAPFLPLELGSADAILGIQWLASLGDMKCNWKLQKLSFMVGEEEVELRG 348

Query: 121 DPSLIKAEYSLKTFAKTSKEEDKGFLLEFPKFEVE 156
           DPSL  +  S+K   K    E +G ++EF   + E
Sbjct: 349 DPSLCCSPISMKGLWKALDREGQGVIIEFGGLQTE 383

BLAST of MELO3C010020 vs. TAIR10
Match: AT3G29750.1 (AT3G29750.1 Eukaryotic aspartyl protease family protein)

HSP 1 Score: 61.2 bits (147), Expect = 6.7e-10
Identity = 39/144 (27.08%), Postives = 69/144 (47.92%), Query Frame = 1

Query: 1   MKLKGLVKDMEVLILIDNGATYNFIQQAVVDELELTILKGTTLEVTIGDGSNKRGKGLCQ 60
           M+  G + D +V++ ID+GAT NFI   +   L+L         V +G     +  G C 
Sbjct: 124 MRFYGFILDHKVVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCL 183

Query: 61  RVEVKLPELTIIADYLMVELGR--VDVILGMHWLSTTCLVKIHWPTLTMSFKVGDKKVTL 120
            + + + E+ I  ++L+++L +  VDVILG  WLS      ++W     SF    + +TL
Sbjct: 184 GIRLWVQEVEITENFLLLDLAKTDVDVILGYEWLSKLGETMVNWQNQDFSFSHNQQWITL 243

Query: 121 RGDPSLIKAEYSLKTFAKTSKEED 143
             +   ++ + + K   K+  E++
Sbjct: 244 CAEHEELE-QVTTKVKMKSENEQE 266

BLAST of MELO3C010020 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 8.4e-47
Identity = 93/162 (57.41%), Postives = 126/162 (77.78%), Query Frame = 1

Query: 1   MKLKGLVKDMEVLILIDNGATYNFIQQAVVDELELTILKGTTLEVTIGDGSNKRGKGLCQ 60
           MK+KG +K  EVLILID+GAT+NFI   +V+E+ L +   T   VTIGDG+  +G+G+C 
Sbjct: 386 MKIKGEIKGKEVLILIDSGATHNFIHNKIVEEVGLELENHTPFGVTIGDGTRCQGRGVCN 445

Query: 61  RVEVKLPELTIIADYLMVELGRVDVILGMHWLSTTCLVKIHWPTLTMSFKVGDKKVTLRG 120
           R+E+KL E+TI+AD+L +ELG VDVILGM WL+TT  +KIHWP+LTM+F++G K+  L+G
Sbjct: 446 RLELKLKEITIVADFLAIELGSVDVILGMQWLNTTGTMKIHWPSLTMTFRMGKKQFILKG 505

Query: 121 DPSLIKAEYSLKTFAKTSKEEDKGFLLEFPKFEVEEEHDCDE 163
           DPSLI+AE SLKT  KT +E+D+GFLLE   +E EE+ + DE
Sbjct: 506 DPSLIRAECSLKTIEKTWEEDDQGFLLEMQNYEAEEDGELDE 547

BLAST of MELO3C010020 vs. NCBI nr
Match: gi|778726094|ref|XP_011659055.1| (PREDICTED: uncharacterized protein LOC105436127 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 6.0e-45
Identity = 90/162 (55.56%), Postives = 125/162 (77.16%), Query Frame = 1

Query: 1   MKLKGLVKDMEVLILIDNGATYNFIQQAVVDELELTILKGTTLEVTIGDGSNKRGKGLCQ 60
           MKL G+VK   V +LID+GAT+NFI Q + +E  + I + T+  VTIG+G+  +GKG+C+
Sbjct: 121 MKLMGMVKGKAVTVLIDSGATHNFIHQTLAEERHILIDEDTSFGVTIGNGTKCKGKGVCK 180

Query: 61  RVEVKLPELTIIADYLMVELGRVDVILGMHWLSTTCLVKIHWPTLTMSFKVGDKKVTLRG 120
           RVE+KL  LTI+A +L VELG VDV+LGM WL TT  +K+HWP+LTM+F+VG+K++TL+G
Sbjct: 181 RVELKLNTLTIVAGFLAVELGSVDVVLGMQWLDTTGTMKVHWPSLTMTFQVGEKQITLKG 240

Query: 121 DPSLIKAEYSLKTFAKTSKEEDKGFLLEFPKFEVEEEHDCDE 163
           DP+LIKAE SLKT  KT +++D+GFLL F  +E E E++  E
Sbjct: 241 DPTLIKAECSLKTLGKTWEDDDQGFLLGFQNYETEVENEYKE 282

BLAST of MELO3C010020 vs. NCBI nr
Match: gi|659077522|ref|XP_008439250.1| (PREDICTED: uncharacterized protein LOC103484090 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 2.5e-43
Identity = 90/157 (57.32%), Postives = 121/157 (77.07%), Query Frame = 1

Query: 1   MKLKGLVKDMEVLILIDNGATYNFIQQAVVDELELTILKGTTLEVTIGDGSNKRGKGLCQ 60
           MKLKG ++  E++ILID+GAT+NFI Q++  +L+L + + T    TIG+G+  +GKG+C+
Sbjct: 160 MKLKGWIRQKEIVILIDSGATHNFIHQSLAVDLKLGLEQHTQFGYTIGNGTRCKGKGICR 219

Query: 61  RVEVKLPELTIIADYLMVELGRVDVILGMHWLSTTCLVKIHWPTLTMSFKVGDKKVTLRG 120
           RVEVKL E+TIIAD+L VELG VD +LGM WL TT  +KIHWP+LTMSF    +++ L+G
Sbjct: 220 RVEVKLEEITIIADFLAVELGSVDAVLGMQWLDTTGTMKIHWPSLTMSFWNEGRQIILKG 279

Query: 121 DPSLIKAEYSLKTFAKTSKEEDKGFLLEFPKFEVEEE 158
           DPSLIKAE SL+T  KT +E+D+GFLLE+   EVE E
Sbjct: 280 DPSLIKAECSLRTLEKTWQEDDQGFLLEWANMEVEAE 316

BLAST of MELO3C010020 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 4.3e-43
Identity = 89/157 (56.69%), Postives = 122/157 (77.71%), Query Frame = 1

Query: 1   MKLKGLVKDMEVLILIDNGATYNFIQQAVVDELELTILKGTTLEVTIGDGSNKRGKGLCQ 60
           MK+KG ++  E++ILID+GAT+NFI Q++V +L+L + + T    TIG+G+  +GKG+C+
Sbjct: 329 MKIKGWIRQKEIVILIDSGATHNFIHQSLVVDLKLGMEQHTQFGYTIGNGTRCKGKGICR 388

Query: 61  RVEVKLPELTIIADYLMVELGRVDVILGMHWLSTTCLVKIHWPTLTMSFKVGDKKVTLRG 120
           RVEVKL E+TIIAD+L VELG VD +L M WL TT  +KIHWP+LTMSF  G +++ L+G
Sbjct: 389 RVEVKLEEITIIADFLAVELGSVDAVLEMQWLDTTGTMKIHWPSLTMSFWNGGRQIILKG 448

Query: 121 DPSLIKAEYSLKTFAKTSKEEDKGFLLEFPKFEVEEE 158
           DPSLI+AE SL+T  KT +E+D+GFLLE+   EVE E
Sbjct: 449 DPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETE 485

BLAST of MELO3C010020 vs. NCBI nr
Match: gi|659115482|ref|XP_008457581.1| (PREDICTED: uncharacterized protein LOC103497247 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 1.3e-42
Identity = 89/166 (53.61%), Postives = 120/166 (72.29%), Query Frame = 1

Query: 1   MKLKGLVKDMEVLILIDNGATYNFIQQAVVDELELTILKGTTLEVTIGDGSNKRGKGLCQ 60
           MKL+G +K  +V+ILID+GAT+NFI Q +V EL L++   T   VTIGDG+   GKG+C+
Sbjct: 244 MKLRGTIKGRKVIILIDSGATHNFIHQGIVQELALSLHGKTKFGVTIGDGTTLEGKGICK 303

Query: 61  RVEVKLPELTIIADYLMVELGRVDVILGMHWLSTTCLVKIHWPTLTMSFKVGDKKVTLRG 120
           ++E KLP+LTI+ D+L++ELGR+D++LGM WLSTT  + IHWP++ M F  G   V L+G
Sbjct: 304 KIEAKLPKLTIVEDFLVIELGRIDLVLGMQWLSTTRFMGIHWPSMMMVFMAGTTHVVLKG 363

Query: 121 DPSLIKAEYSLKTFAKTSKEEDKGFLLEFP----KFEVEEEHDCDE 163
           DPSL KAE SL T  KT +EED GFLLEF     K + E+E + +E
Sbjct: 364 DPSLTKAECSLITIFKTWEEEDHGFLLEFQGVEIKVDTEDESEKEE 409

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A5CAG1_VITVI3.6e-2842.57Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018166 PE=4 SV=1[more]
E5GC18_CUCME3.0e-2744.83Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
F6GVT4_VITVI9.7e-2644.12Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=... [more]
A0A087HF90_ARAAL8.2e-2539.35Uncharacterized protein OS=Arabis alpina GN=AALP_AA2G041600 PE=4 SV=1[more]
A0A087FY99_ARAAL1.4e-2439.35Uncharacterized protein OS=Arabis alpina GN=AALP_AAs54367U000800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G29750.16.7e-1027.08 Eukaryotic aspartyl protease family protein[more]
Match NameE-valueIdentityDescription
gi|778697580|ref|XP_011654353.1|8.4e-4757.41PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
gi|778726094|ref|XP_011659055.1|6.0e-4555.56PREDICTED: uncharacterized protein LOC105436127 [Cucumis sativus][more]
gi|659077522|ref|XP_008439250.1|2.5e-4357.32PREDICTED: uncharacterized protein LOC103484090 [Cucumis melo][more]
gi|659094491|ref|XP_008448087.1|4.3e-4356.69PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo][more]
gi|659115482|ref|XP_008457581.1|1.3e-4253.61PREDICTED: uncharacterized protein LOC103497247 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013242Retroviral aspartyl protease
IPR021109Peptidase_aspartic_dom_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010020T1MELO3C010020T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013242Retroviral aspartyl proteasePFAMPF08284RVP_2coord: 7..93
score: 4.5
IPR021109Aspartic peptidase domainunknownSSF50630Acid proteasescoord: 4..94
score: 3.8

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None