MELO3C010001 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010001
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Locationchr2 : 10579167 .. 10579652 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATTCATTCCAGAACAATGTGATGTGTTCAGATCTCAACCGACCATTTCGCTTCGAAGGAGCACACTTTAAGCGTTGGAAGCAGAAGAGGTTGTTCTTCTTAACTTTAAAGAAAGTTGCTACCACATGTACCACTGAAGAACCTAATGTTCTAGAATCTAATAATCTAATGAAGGAGCCAATTAAAAATCATGACGCATGGACAGAGAAAGACTTCACATTTAAGAACTTAATTTTGAATGGACTTACTGATGAGTTATACGATTATTATAGTACCATGTCTACTGCAAAAGGGGTTTGGAACATGTTACAAAAGAAATATGACACTGAAGAAGCTAGTTTCAAGAAGTATGCGGTGAGTCGATATCTACGATATCAAATGACTAACTATAGATCTGTGGAGGCCCAATCATACGAGTTACAAAAGATGGCACACGAAATAATTTTTGAAAATACGCAACTGATGGCATGTTTATACTAA

mRNA sequence

ATGGCCGATTCATTCCAGAACAATGTGATGTGTTCAGATCTCAACCGACCATTTCGCTTCGAAGGAGCACACTTTAAGCGTTGGAAGCAGAAGAGGTTGTTCTTCTTAACTTTAAAGAAAGTTGCTACCACATGTACCACTGAAGAACCTAATGTTCTAGAATCTAATAATCTAATGAAGGAGCCAATTAAAAATCATGACGCATGGACAGAGAAAGACTTCACATTTAAGAACTTAATTTTGAATGGACTTACTGATGAGTTATACGATTATTATAGTACCATGTCTACTGCAAAAGGGGTTTGGAACATGTTACAAAAGAAATATGACACTGAAGAAGCTAGTTTCAAGAAGTATGCGGTGAGTCGATATCTACGATATCAAATGACTAACTATAGATCTGTGGAGGCCCAATCATACGAGTTACAAAAGATGGCACACGAAATAATTTTTGAAAATACGCAACTGATGGCATGTTTATACTAA

Coding sequence (CDS)

ATGGCCGATTCATTCCAGAACAATGTGATGTGTTCAGATCTCAACCGACCATTTCGCTTCGAAGGAGCACACTTTAAGCGTTGGAAGCAGAAGAGGTTGTTCTTCTTAACTTTAAAGAAAGTTGCTACCACATGTACCACTGAAGAACCTAATGTTCTAGAATCTAATAATCTAATGAAGGAGCCAATTAAAAATCATGACGCATGGACAGAGAAAGACTTCACATTTAAGAACTTAATTTTGAATGGACTTACTGATGAGTTATACGATTATTATAGTACCATGTCTACTGCAAAAGGGGTTTGGAACATGTTACAAAAGAAATATGACACTGAAGAAGCTAGTTTCAAGAAGTATGCGGTGAGTCGATATCTACGATATCAAATGACTAACTATAGATCTGTGGAGGCCCAATCATACGAGTTACAAAAGATGGCACACGAAATAATTTTTGAAAATACGCAACTGATGGCATGTTTATACTAA

Protein sequence

MADSFQNNVMCSDLNRPFRFEGAHFKRWKQKRLFFLTLKKVATTCTTEEPNVLESNNLMKEPIKNHDAWTEKDFTFKNLILNGLTDELYDYYSTMSTAKGVWNMLQKKYDTEEASFKKYAVSRYLRYQMTNYRSVEAQSYELQKMAHEIIFENTQLMACLY*
Homology
[Close]
BLAST of MELO3C010001 vs. TrEMBL
Match: M5X570_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb012171mg PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.3e-40
Identity = 85/150 (56.67%), Postives = 107/150 (71.33%), Query Frame = 1 

Query: 7   NNVMCSDLNRPFRFEGAHFKRWKQKRLFFLTLKKVATTCTTEEPNVLESNNLMKEPIKNH 66
           NN    D N+P +FEG HFKRW+QK LF+ T KK+A+ CT+++P    S+N   E     
Sbjct: 5   NNSFTPDPNKPSKFEGLHFKRWRQKMLFYPTTKKLASVCTSDKPYA--SDNPTPEQTWAL 64

Query: 67  DAWTEKDFTFKNLILNGLTDELYDYYSTMSTAKGVWNMLQKKYDTEEASFKKYAVSRYLR 126
             WTE DF  KN ILNGL+D+LYDYYS+  TAK +W+ LQK Y+TEEA  KK+AVSRYL+
Sbjct: 65  QTWTENDFLCKNYILNGLSDDLYDYYSSYDTAKDLWDALQKNYNTEEAGAKKFAVSRYLK 124

Query: 127 YQMTNYRSVEAQSYELQKMAHEIIFENTQL 157
           +QM + +SVEAQS+ELQK AHEII E   L
Sbjct: 125 FQMIDEKSVEAQSHELQKNAHEIIIEGMNL 152

[Close]
BLAST of MELO3C010001 vs. TrEMBL
Match: M5WR01_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024461mg PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.1e-32
Identity = 75/146 (51.37%), Postives = 96/146 (65.75%), Query Frame = 1 

Query: 7   NNVMCSDLNRPFRFEGAHFKRWKQKRLFFLTLKKVATTCTTEEPNVLESNNLMKEPIKNH 66
           NN +  DLN+P +FEG HFKRW+QK LF+LT KK+A  CT+ +P   +  N   E     
Sbjct: 5   NNSITPDLNKPSKFEGLHFKRWRQKMLFYLTTKKLAFVCTSVKPYAFD--NPTPEQTWAL 64

Query: 67  DAWTEKDFTFKNLILNGLTDELYDYYSTMSTAKGVWNMLQKKYDTEEASFKKYAVSRYLR 126
             WTE DF  KN ILNGL+++LYDYYS+  TAK +W+ LQKKYDT+E+  KK+AV     
Sbjct: 65  QTWTENDFLCKNYILNGLSNDLYDYYSSYDTAKELWDALQKKYDTKESGAKKFAV----- 124

Query: 127 YQMTNYRSVEAQSYELQKMAHEIIFE 153
                   +EAQ +ELQK+AHEII E
Sbjct: 125 --------IEAQPHELQKIAHEIIIE 135

[Close]
BLAST of MELO3C010001 vs. TrEMBL
Match: A5AMN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.9e-24
Identity = 58/134 (43.28%), Postives = 84/134 (62.69%), Query Frame = 1 

Query: 16  RPFRFEGAHFKRWKQKRLFFLTLKKVATTCTTEEPNVLESNNLMKEPIKNHDAWTEKDFT 75
           +P +F G +FKRW+QK LF+LT   +A   T + P + E  + + + I   DAW   DF 
Sbjct: 40  KPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDI-QVISAIDAWKHSDFL 99

Query: 76  FKNLILNGLTDELYDYYSTMSTAKGVWNMLQKKYDTEEASFKKYAVSRYLRYQMTNYRSV 135
            +N ++NGLTD LY+ YS   TAK +W  L +KY TE+A  KK+ V R+L Y+M + ++V
Sbjct: 100 CRNYVMNGLTDSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTV 159

Query: 136 EAQSYELQKMAHEI 150
            +Q  ELQ + HEI
Sbjct: 160 VSQVQELQVILHEI 172

[Close]
BLAST of MELO3C010001 vs. TrEMBL
Match: A5AEN5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 59/141 (41.84%), Postives = 85/141 (60.28%), Query Frame = 1 

Query: 16  RPFRFEGAHFKRWKQKRLFFLTLKKVATTCTTEEPNVLESNNLMKEPIKNHDAWTEKDFT 75
           +P +F G +FKRW+QK LF+LT   +A   T + P + E  + + + I   DAW   DF 
Sbjct: 40  KPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDI-QVISAIDAWKHSDFL 99

Query: 76  FKNLILNGLTDELYDYYSTMSTAKGVWNMLQKKYDTEEASFKKYAVSRYLRYQMTNYRSV 135
            +N ++NGL D LY+ YS   TAK +W  L +KY TE+A  KK+ V R+L Y+M + ++V
Sbjct: 100 CRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKMVDSKTV 159

Query: 136 EAQSYELQKMAHEIIFENTQL 157
            +Q  ELQ + HEI  E   L
Sbjct: 160 VSQVQELQVILHEIHAEGMML 179

[Close]
BLAST of MELO3C010001 vs. TrEMBL
Match: A5B994_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023328 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-22
Identity = 57/141 (40.43%), Postives = 85/141 (60.28%), Query Frame = 1 

Query: 16  RPFRFEGAHFKRWKQKRLFFLTLKKVATTCTTEEPNVLESNNLMKEPIKNHDAWTEKDFT 75
           +P +F G  FKRW+QK LF++T   +A     E P +LE     KE +   DAW   DF 
Sbjct: 17  KPEKFNGNEFKRWQQKMLFYVTTLNLARFLHEECP-ILEEGETNKEKVAAVDAWKHSDFL 76

Query: 76  FKNLILNGLTDELYDYYSTMSTAKGVWNMLQKKYDTEEASFKKYAVSRYLRYQMTNYRSV 135
            +N +LNGL + LY+ Y ++ TA+ +W+ L KKY TE+A  KK+ V ++L ++M + ++V
Sbjct: 77  CRNYVLNGLDNTLYNVYCSLKTAEELWDSLDKKYKTEDAGMKKFIVGKFLDFKMIDSKTV 136

Query: 136 EAQSYELQKMAHEIIFENTQL 157
            +Q  ELQ + HEI  E   L
Sbjct: 137 RSQVQELQVILHEIHSEGMSL 156

[Close]
BLAST of MELO3C010001 vs. TAIR10
Match: AT4G00980.1 (AT4G00980.1 zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-08
Identity = 37/139 (26.62%), Postives = 59/139 (42.45%), Query Frame = 1 

Query: 19  RFEGAHFKRWKQKRLFFLTLKKVATTCTTEEPNVLESNNLMKEP--IKNHDA----WTEK 78
           RF+G  +  W  +   FL   K+    +   P++  S      P  I   DA    W   
Sbjct: 197 RFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKWLRD 256

Query: 79  DFTFKNLILNGLTDELYDYYST-MSTAKGVWNMLQKKYDTEEASFKKYAVSRYLRYQMTN 138
           D+     ++N L+D LY  YS     AK +W+ L+  Y  +E+  K+  V +Y+ ++M  
Sbjct: 257 DYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFRMVE 316

Query: 139 YRSVEAQSYELQKMAHEII 151
            R +  Q     K+A  I+
Sbjct: 317 ERPILEQVQVFNKIADSIV 335

[Close]
BLAST of MELO3C010001 vs. NCBI nr
Match: gi|659123591|ref|XP_008461736.1| (PREDICTED: uncharacterized protein LOC103500269 [Cucumis melo])

HSP 1 Score: 216.5 bits (550), Expect = 3.5e-53
Identity = 110/156 (70.51%), Postives = 124/156 (79.49%), Query Frame = 1 

Query: 1   MADSFQNNVMCSDLNRPFRFEGAHFKRWKQKRLFFLTLKKVATTCTTEEPNVLESNNLMK 60
           MA  FQ+ +M  DLN PFRFEGAHFKRWKQK LFFLTLKKVATTCTTE+  V E +   +
Sbjct: 1   MAGQFQSYLMSFDLNCPFRFEGAHFKRWKQKMLFFLTLKKVATTCTTEKLKVSEKDPT-E 60

Query: 61  EPIKNHDAWTEKDFTFKNLILNGLTDELYDYYSTMSTAKGVWNMLQKKYDTEEASFKKYA 120
           E +KN   WTE DF +KNLILNGLTDELYDYYSTM+TAK VW+  QKKYDTEE   KKYA
Sbjct: 61  EQLKNLATWTETDFIYKNLILNGLTDELYDYYSTMTTAKEVWDAQQKKYDTEETGSKKYA 120

Query: 121 VSRYLRYQMTNYRSVEAQSYELQKMAHEIIFENTQL 157
           V+ YLRYQ+TN RSVEAQS+E+QK+AHEII E   L
Sbjct: 121 VNPYLRYQITNDRSVEAQSHEIQKIAHEIISEGMPL 155

[Close]
BLAST of MELO3C010001 vs. NCBI nr
Match: gi|596038993|ref|XP_007219870.1| (hypothetical protein PRUPE_ppb012171mg [Prunus persica])

HSP 1 Score: 172.2 bits (435), Expect = 7.6e-40
Identity = 85/150 (56.67%), Postives = 107/150 (71.33%), Query Frame = 1 

Query: 7   NNVMCSDLNRPFRFEGAHFKRWKQKRLFFLTLKKVATTCTTEEPNVLESNNLMKEPIKNH 66
           NN    D N+P +FEG HFKRW+QK LF+ T KK+A+ CT+++P    S+N   E     
Sbjct: 5   NNSFTPDPNKPSKFEGLHFKRWRQKMLFYPTTKKLASVCTSDKPYA--SDNPTPEQTWAL 64

Query: 67  DAWTEKDFTFKNLILNGLTDELYDYYSTMSTAKGVWNMLQKKYDTEEASFKKYAVSRYLR 126
             WTE DF  KN ILNGL+D+LYDYYS+  TAK +W+ LQK Y+TEEA  KK+AVSRYL+
Sbjct: 65  QTWTENDFLCKNYILNGLSDDLYDYYSSYDTAKDLWDALQKNYNTEEAGAKKFAVSRYLK 124

Query: 127 YQMTNYRSVEAQSYELQKMAHEIIFENTQL 157
           +QM + +SVEAQS+ELQK AHEII E   L
Sbjct: 125 FQMIDEKSVEAQSHELQKNAHEIIIEGMNL 152

[Close]
BLAST of MELO3C010001 vs. NCBI nr
Match: gi|955353733|ref|XP_014620223.1| (PREDICTED: uncharacterized protein LOC106795316 [Glycine max])

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-38
Identity = 83/141 (58.87%), Postives = 107/141 (75.89%), Query Frame = 1 

Query: 12  SDLNRPFRFEGAHFKRWKQKRLFFLTLKKVATTCTTEEPNVLE-SNNLMKEPIKNHDA-W 71
           +DLN+PFRFEG HFKRW+QK +F+LT++KVA    T+ P VLE +   +K+ +    A W
Sbjct: 12  NDLNKPFRFEGYHFKRWQQKMMFYLTMRKVAYVLNTDIPVVLEDAEKEVKDKMTMELALW 71

Query: 72  TEKDFTFKNLILNGLTDELYDYYSTMSTAKGVWNMLQKKYDTEEASFKKYAVSRYLRYQM 131
            E D+  KN ILNGL D+LYDYYS   +AK VW  L+KKYDTEEA  KKY VSRYL+YQM
Sbjct: 72  NENDYLCKNFILNGLADDLYDYYSPYKSAKLVWLALEKKYDTEEAGTKKYVVSRYLKYQM 131

Query: 132 TNYRSVEAQSYELQKMAHEII 151
           T+ +SVE+QS+E+QK+AH+II
Sbjct: 132 TDDKSVESQSHEIQKIAHDII 152

[Close]
BLAST of MELO3C010001 vs. NCBI nr
Match: gi|694324346|ref|XP_009353199.1| (PREDICTED: uncharacterized protein LOC103944460 [Pyrus x bretschneideri])

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-38
Identity = 81/144 (56.25%), Postives = 102/144 (70.83%), Query Frame = 1 

Query: 13   DLNRPFRFEGAHFKRWKQKRLFFLTLKKVATTCTTEEPNVLESNNLMKEPIKNHDAWTEK 72
            DLN+P +F+G +FKRW+QK LFFL+ KK+A+ CTT +P + E   +     K    W E 
Sbjct: 1259 DLNKPSKFKGLYFKRWRQKMLFFLSTKKLASFCTTVKPTLPEEPTMAHT--KASQTWIEN 1318

Query: 73   DFTFKNLILNGLTDELYDYYSTMSTAKGVWNMLQKKYDTEEASFKKYAVSRYLRYQMTNY 132
            DF  KN ILNG  D+LYDYYS   TAK +W  LQKKYD EEA  KK+ VSRYL+YQM + 
Sbjct: 1319 DFLAKNYILNGFPDDLYDYYSDYGTAKDLWEALQKKYDNEEAGAKKFVVSRYLKYQMVDD 1378

Query: 133  RSVEAQSYELQKMAHEIIFENTQL 157
            +SVEAQS+ELQK++HEII+E   L
Sbjct: 1379 KSVEAQSHELQKISHEIIYEGMVL 1400

[Close]
BLAST of MELO3C010001 vs. NCBI nr
Match: gi|955382863|ref|XP_014625903.1| (PREDICTED: uncharacterized protein LOC106796829 [Glycine max])

HSP 1 Score: 165.6 bits (418), Expect = 7.1e-38
Identity = 84/147 (57.14%), Postives = 107/147 (72.79%), Query Frame = 1 

Query: 12  SDLNRPFRFEGAHFKRWKQKRLFFLTLKKVATTCTTEEPNVLE-SNNLMKEPIKNHDA-W 71
           +DLN+PFRFEG HFKRW+QK  F+LT++KVA    T+ P VLE +   +K+ +    A W
Sbjct: 12  NDLNKPFRFEGYHFKRWQQKMTFYLTMRKVAYVLNTDIPVVLEDAEKEVKDKMTMELALW 71

Query: 72  TEKDFTFKNLILNGLTDELYDYYSTMSTAKGVWNMLQKKYDTEEASFKKYAVSRYLRYQM 131
            E D+  KN ILNGL D+LYDYYS   +AK VW  L+KKYD EEA  KKY VSRYL+YQM
Sbjct: 72  NENDYLCKNFILNGLADDLYDYYSPYKSAKLVWLALEKKYDIEEAGTKKYVVSRYLKYQM 131

Query: 132 TNYRSVEAQSYELQKMAHEIIFENTQL 157
           T+ +SVE+QS+E+QK+AH+II E   L
Sbjct: 132 TDDKSVESQSHEIQKIAHDIISEGMTL 158

The following BLAST results are available for this feature:
BLAST of MELO3C010001 vs. TrEMBL
Match NameE-valueIdentityDescription
M5X570_PRUPE5.3e-4056.67Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb012171mg PE=4 SV=1[more]
M5WR01_PRUPE3.1e-3251.37Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024461mg PE=4 S... [more]
A5AMN2_VITVI6.9e-2443.28Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1[more]
A5AEN5_VITVI1.2e-2341.84Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1[more]
A5B994_VITVI1.0e-2240.43Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023328 PE=4 SV=1[more]
BLAST of MELO3C010001 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00980.18.1e-0826.62 zinc knuckle (CCHC-type) family protein[more]
BLAST of MELO3C010001 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123591|ref|XP_008461736.1|3.5e-5370.51PREDICTED: uncharacterized protein LOC103500269 [Cucumis melo][more]
gi|596038993|ref|XP_007219870.1|7.6e-4056.67hypothetical protein PRUPE_ppb012171mg [Prunus persica][more]
gi|955353733|ref|XP_014620223.1|2.4e-3858.87PREDICTED: uncharacterized protein LOC106795316 [Glycine max][more]
gi|694324346|ref|XP_009353199.1|2.4e-3856.25PREDICTED: uncharacterized protein LOC103944460 [Pyrus x bretschneideri][more]
gi|955382863|ref|XP_014625903.1|7.1e-3857.14PREDICTED: uncharacterized protein LOC106796829 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010001T1MELO3C010001T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 69..149
score: 7.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010001Silver-seed gourdcarmeB0540
MELO3C010001Silver-seed gourdcarmeB0946
MELO3C010001Cucumber (Chinese Long) v3cucmeB044
MELO3C010001Watermelon (97103) v2mewmbB251
MELO3C010001Cucumber (Gy14) v1cgymeB574
MELO3C010001Cucurbita maxima (Rimu)cmameB069
MELO3C010001Cucurbita maxima (Rimu)cmameB107
MELO3C010001Cucurbita moschata (Rifu)cmomeB061
MELO3C010001Cucurbita moschata (Rifu)cmomeB099
MELO3C010001Wild cucumber (PI 183967)cpimeB044
MELO3C010001Cucumber (Chinese Long) v2cumeB043
MELO3C010001Watermelon (Charleston Gray)mewcgB246
MELO3C010001Cucurbita pepo (Zucchini)cpemeB007
MELO3C010001Cucurbita pepo (Zucchini)cpemeB332
MELO3C010001Bottle gourd (USVL1VR-Ls)lsimeB398
MELO3C010001Cucumber (Gy14) v2cgybmeB040