MELO3C009966 (gene) Melon (DHL92) v3.5.1

NameMELO3C009966
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionADP-ribosylation factor
Locationchr4 : 26449141 .. 26454751 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGTAGTAAGCAAAAAGGGATAGTATGACGTTGATGTTAACTCTAAAATCTCTTCCAAATTTTGTGTGATGTTATTGTTTGGAGCGTAAATAGTTGGTAATTTTTTTAATATTTTTTTTAAAACTCACAGTATCTAAATTAAACAAAAATATAGATTTAACCTAAATTCTTAAATTCATTATTTAAAAAGTTAAAAAAAATTGGAAAACAAAAATTTAGAAGGCCATTATAAGAAAGGAAAAAGGGTTGCGGTAAGATATTGTGATCTCCCCTTTCCCTTCAGATCTGTCTCCTGAAGGCCCCAAATTCAAGAGGTAACCTAATTTCGCTCCATTTTTCTTTCAATTTTCATCTTTCGAACTCCATTCTGTATCACATTTTTATTGCAGATCTCAAATCTCATTCGATCTTTTAATTTCGGTTTCACCTTTTCATTTGCTGGTACATTGTTAAATCTTTTTGAACTTCTTCGTTTGCTGGTGAAGTAAAATTTGAATTTCATATCTGCTGTAATGGAAATTACACTGGCTCAGTTTGAATTTCTATCTCATTGCGTGATTTGAATGGCATTGGGAGGAACAAAATGTTATGGAGAAATGAATTTTTGTAATGGTTATTTATGTCGTAGTTTTCTATCGATGATAATCACTATAGGATTTTGTCTTGGGAAATCTTTTAAATCCATGTCAAGACACACTGGAAATTGTTTTCAAATGTTTGATTTTCTAATTTTGGATGTTTTTTGATTGCCAGTTCTGTGATTGTTGCTCATAGAGGGAAGAAGAAATGGGGTTGACCTTCACGAAGCTCTTTAGCAGGCTCTTTTCTAAAAAAGAGATGCGTATTTTGATGGTGGGTCTCGATGCTGCTGGTAAAACGACGATCCTGTACAAGTTGAAGCTCGGAGAAATTGTTACCACCATTCCAACTATTGGTAAGTTCATGTATTAAGCGCATGTCTAGTTGTAACCTTTTTTGAATTTCTTCTCTAAGTCTTTGACATTGTAGTTGAAAGTTTTAAACAGAAAGGATTTAAGTGGAAAAGCGAGGTAAAACGAATTGCATCAATGGTTAACAACCTCGTTTAGAGAACATAGCACATTCTTGAATTTATAACCAAACCATTACGTCAATTTCACCAATATGCGCGTTAATTGATTCTTTTCTTTTAGGATTTAATGTGGAGACTGTGGAGTACAAGAACATCAGCTTTACCGTTTGGGATGTTGGTGGTCAGGACAAGGTATGCATCTCGCTCTCTCTCCCTTGCCTTCCCTTCCATGCGTGAGGCTTAAAAGAGAAATAATTAATTTATGTTGAAATTAGCTTCCCTGCTTTTATATTTTAAAATGTACATAAGTGATTTATTTAATTGCTAAGTTAGAAGTTTCATGGTTTTCTACTAGTCTCGAGTTTGATGCATAAAAACTTTAGTCTGGGTGGTATGTTCATGTTTGTCTTGTTTCAGACACTCACACTTCACAACACTTGTTAGACACGTTGTAACTTGTTAAGGACAATAAATATATGTTTACACTAGTTGAACAAATCAAATACCAGTTTGACATTGATGAGCACTTGGTACAATAAGCACAATAAAAGCATTTCGAATACTCTTTTGACAATTTGACAATTTGACAATTTGACAATTCCAATCATTAGATTTATGAACTAAAGTGTTCAAGCTTTTCCTTTTCATTTTTCTTTATTTTTATTATAGTTTTTTTTGTAAAATGTTAAATCATTTAGATAAACAAAGTTTGTTTGGATGTATCTTGAATATTTTGACATGAGATATTACAACATGTATGTGTATGTAGCATAAACTAAAACAAAATTTTAGCGTTAAGAATTGTTGAAATTGAGAAAATACTATATATTTTGAAAAACACGTACTATAATAATTAAGTGCTTGCCACGTGTCTGTGCTTTGGATTCTTCGAAATAATGTATCATTATATATATAATTTATTTATAATATCTTTTGTTTAAAAAATATTAGTTAAAAAGAAAAAAATAGTTGAAAACTGACTCCAATTTTATACTCTAAAGGGCTTATACATTTTGATTATGAAAATTGGACATTGATAAAATTTCTTGGATGAATTTTTAGGAGACATTCTACACAATATTGTTTGTATATTTTATTTGATTTGGGTACTAGGGGTGTAAGAATAACTCGAGCAACCTGACAACTCGGACTACCTAACCCATATTATTTGGGTTATGGGTTAGGTTGGGTTAGTTTAAAATGAGGGTTGAGTTGGGTTGAAAATTTTGATTTTTTTCGGGTTGGGTTGGGTTGTGGGTTGGAGGGTTGAAAAATTCGGGTCAACACAAACCAACCCGAATTAATATAATAAATATAAATAAATAAATAAATAAAAATATATATTATAGTTCATTATTATTTATTTATTGAATAAAAATCAAACAATCTTATGAGTTTTTTTGAGATTTTTTTTTTCTTTTTTTGTTTAACTTGATGCAAAACATATACGCATGATAATTTCCATTTACAAACATTAAAATTTAGAAACGAAAAACAAATAAAAATAATACAACCCTAAACCCAACCCAACCCATATCTTATGGGTTGGGTTGGGTTGGAAACTTAAGTCGGGTTGACAACCCAACCAACCCGAAAATATGGGTTGGGTTGAGAATATCTCTGAACCCAACCCAACCCGATTACACCCCTATTGGGTACATCTCATTTTTGTTTTTCTTTTATTGAAATTAACGGCTTTCATTGGGAAAAAACGAAAGAATACATAGGCGCACAAAAAACCAAACCCTTCTCATTTTAATGAACAGGAGATGAGGATCGGTATTCATGTAACGTCATAGAGTTTGTCTCTGTTGATTGATCAAATGAAAAAAATGATTGACATTTTTTACAATTTTTTTATCCTTTTATTACACAAGTTTTTTTTTTTATTATATTAATTGAAGGTAAAATACGTTTTTCCTCCCTTCACTAAATGGATACACAGTATGCTTAATGTTCTTATTTTTTTAGACGTTAAATGGTACGATATATATACGTTAAGATAAATAAGTGGCAACTTTAATCATGTGTCGCTTTAGGTCTTTGCTTCTGCTTTATAAATTTGTGAGAAACGGAAATTTCCAAAGTTGTTATCTTTGACTATGGTTTTTTTTTGTTTTTTGTAAAGATCCGTCCACTTTGGAGGCACTATTTCCAGAATACACAGGGCCTTATTTTTGTTGTGGATAGCAACGATAGGGACCGAGTTGTTGAGGCAAGAGATGAGTTGCACAGGATGTTGAATGAGGTATATATCCTGTTTATAGCACCCTATACTTTAATACTGCATTAATTAATTCCTATATATGCTATCACTCTAACTTCAATATTCTATTGCTGTTTGTACTTTGTTCTTACCATATCCTTATTCATCAGTCTATTGATCCTACATTTTTAGTTTTGTAACTTTATCGGCGAGGCTCACAAACTAAGGCGTGCCTAAGGCGCATGCCTTTTGTGAAGTTCCAAGGCTCTAGGGAGAGAGAGCGAGATTCATGAAAAATAATAATAATTAGGGTTTTCTCTTCTTTATTAACTAAAAAGAATCAACTTTACTTAGCCTTAATGTGAAATTTCTTGATATATATTGTGCCTCACCTTAAAAAAAATCCACTTATTTATTTCTTTTGCACCTTGCACCTGAGCTCCAGAAGACTATTGCATTTATTGCGGTTTGAGCTTTTAAGAAAATACTGGTTTCAAGCTTCCAAATGGAGTAGTTTTGTGCATGAGATTTACAATTGTATCATAAATCAACGCGGTTTGAGGGAGAAGTGTGGTAGGGTTGGGGGTTGTATTTGTCATGGCAGTGGTTGCTGCAGCTACTGCCGCAGTGGGATTGATGGTTGGAGTAGCAGCAGTGGACTGGCCATTGGTAGCTGATTTCATCTGCAAACAGTGGATATTCTGTTGTTGCCTAGTTGGGGCTAGAAAGGAAGGATAGGCTGGCGGCTGATAATTTGGGGGCTCAATGATCTTGGAGTGAGAAAAGGAATGATTTATATATGCCTTGAGATACAAACCTTGAGGGCCAGAGAAAGGCTTTGTGTAAGCAGAACCAATGAGAAGATAGGAGAGTCGGTGGGCCAGTATATGAAAAGTGAAACCCTTTGTTTGTATAGTGAGTGATAATTGTTAAAGGAGTGCACAGTTACTATTAATTAATAAACTAGAACATAAACATCAATGTATATCTTGTCTAAAGTTAAACTATAAAATTCTTACCGTTCTGTTTTCCTGTATGGCTGTATCGATTTTGCATTTTCTTTGATTTATGAGTATATCCCGATGGTGATGTTATACAATTCTATCTCTAATTGCTGCAGGATGAGCTTAGAGATGCCGTTTTGCTTGTATTTGCTAACAAGCAAGATCTTCCTAATGCCATGAATGCTGCAGAAATAACTGACAAGCTTGGTCTTCACTCTCTTCGCCAACGCCACTGGTAAATTACTTGCTTTTGTTTTCTGTGAGGTAGATTCATTGATTAGACCTAATGAACAATATTTCTTCTGTTAAAACCTGTAACACTAAGCTATAGTCTGCTTGAAAGATGCTCTAAATCGTTGTTTGTATATATCTTTTTCCCTATTACTTGACTATTTCTTATCCCGAAGTTGGAAAAGTGAAATGGTCAAGACTCAAAAATGTTGCTCCAGCACTGTCAGGATACTGTAGAAAGTTGAGATAATGCCTCTTAGTTCAATCCTATTTTATCTTTTTGCAAAATGAGAATCTTTAGTTGGATCAGAGTTGCTTGCACTGCAATTAATATACTCAGACATCATGTTTTGTTTCAGGTACATTCAGAGCACATGTGCGACATCTGGAGAGGGTTTATACGAAGGTCTAGACTGGCTTTCCAACAACATTGCTAGCAAGGTAACTGCTTCTTGAATTAGATCCAAAAAGTAATTGTTTTGTTTGGTTCTGAGTTTAGTTACATTTACCTTCTAATTTCTTCACTTTTTTTTTTTCGTTCTTTCTAATCACACAAAAACAACAAAAATGATTTTTGGTGCGTGGATGTATATTCGATTTGTTTTCCTTCTTTTAACTTGTTGAAACCCTATACTCTTCAGGCCTGAAGCGAATAAATGATTTTGGTGGTTGTTCAAGAATTTGTTCAGAGTTTCCTTCATTCTGGGACCAATAGTTTTCGTTTAATTTCAGTGATAGTTGGGAAACATTTGGCTAGACCTTAAAATGTACTCCAAGTTGTTAATTGCTTCTTTAAGCTTAAACTTCTTAGCTCCTAGAAGTCCATTATTGTACTGTTTTCCATTCAATACCAAGTTCAATTTTTATCTGATCAATTTGATTAATATGAAATGCCCTTATTTTGGCGTGCCACATGGATCATTATTTGGTTGTCTAGAAAAGACCAAATTTTCCCTCATATAGTAAGGATTTCCTTCTCCTTTGGTGAGCTTGAAATGTTTAGATCTCTCGATAACCCTTATTGTGGAGGGAATGACACTTTGGACCTAAGGAAAAGCCCATATTCTGATATGTTATGACTTGTGAAATCTTGGATTTTAAGTTTGGTTTGATAAAG

mRNA sequence

AAAAGTAGTAAGCAAAAAGGGATAGTATGACGTTGATGTTAACTCTAAAATCTCTTCCAAATTTTGTGTGATGTTATTGTTTGGAGCGTAAATAGTTGGTAATTTTTTTAATATTTTTTTTAAAACTCACAGTATCTAAATTAAACAAAAATATAGATTTAACCTAAATTCTTAAATTCATTATTTAAAAAGTTAAAAAAAATTGGAAAACAAAAATTTAGAAGGCCATTATAAGAAAGGAAAAAGGGTTGCGGTAAGATATTGTGATCTCCCCTTTCCCTTCAGATCTGTCTCCTGAAGGCCCCAAATTCAAGAGTTCTGTGATTGTTGCTCATAGAGGGAAGAAGAAATGGGGTTGACCTTCACGAAGCTCTTTAGCAGGCTCTTTTCTAAAAAAGAGATGCGTATTTTGATGGTGGGTCTCGATGCTGCTGGTAAAACGACGATCCTGTACAAGTTGAAGCTCGGAGAAATTGTTACCACCATTCCAACTATTGGATTTAATGTGGAGACTGTGGAGTACAAGAACATCAGCTTTACCGTTTGGGATGTTGGTGGTCAGGACAAGATCCGTCCACTTTGGAGGCACTATTTCCAGAATACACAGGGCCTTATTTTTGTTGTGGATAGCAACGATAGGGACCGAGTTGTTGAGGCAAGAGATGAGTTGCACAGGATGTTGAATGAGGATGAGCTTAGAGATGCCGTTTTGCTTGTATTTGCTAACAAGCAAGATCTTCCTAATGCCATGAATGCTGCAGAAATAACTGACAAGCTTGGTCTTCACTCTCTTCGCCAACGCCACTGGTACATTCAGAGCACATGTGCGACATCTGGAGAGGGTTTATACGAAGGTCTAGACTGGCTTTCCAACAACATTGCTAGCAAGGCCTGAAGCGAATAAATGATTTTGGTGGTTGTTCAAGAATTTGTTCAGAGTTTCCTTCATTCTGGGACCAATAGTTTTCGTTTAATTTCAGTGATAGTTGGGAAACATTTGGCTAGACCTTAAAATGTACTCCAAGTTGTTAATTGCTTCTTTAAGCTTAAACTTCTTAGCTCCTAGAAGTCCATTATTGTACTGTTTTCCATTCAATACCAAGTTCAATTTTTATCTGATCAATTTGATTAATATGAAATGCCCTTATTTTGGCGTGCCACATGGATCATTATTTGGTTGTCTAGAAAAGACCAAATTTTCCCTCATATAGTAAGGATTTCCTTCTCCTTTGGTGAGCTTGAAATGTTTAGATCTCTCGATAACCCTTATTGTGGAGGGAATGACACTTTGGACCTAAGGAAAAGCCCATATTCTGATATGTTATGACTTGTGAAATCTTGGATTTTAAGTTTGGTTTGATAAAG

Coding sequence (CDS)

ATGGGGTTGACCTTCACGAAGCTCTTTAGCAGGCTCTTTTCTAAAAAAGAGATGCGTATTTTGATGGTGGGTCTCGATGCTGCTGGTAAAACGACGATCCTGTACAAGTTGAAGCTCGGAGAAATTGTTACCACCATTCCAACTATTGGATTTAATGTGGAGACTGTGGAGTACAAGAACATCAGCTTTACCGTTTGGGATGTTGGTGGTCAGGACAAGATCCGTCCACTTTGGAGGCACTATTTCCAGAATACACAGGGCCTTATTTTTGTTGTGGATAGCAACGATAGGGACCGAGTTGTTGAGGCAAGAGATGAGTTGCACAGGATGTTGAATGAGGATGAGCTTAGAGATGCCGTTTTGCTTGTATTTGCTAACAAGCAAGATCTTCCTAATGCCATGAATGCTGCAGAAATAACTGACAAGCTTGGTCTTCACTCTCTTCGCCAACGCCACTGGTACATTCAGAGCACATGTGCGACATCTGGAGAGGGTTTATACGAAGGTCTAGACTGGCTTTCCAACAACATTGCTAGCAAGGCCTGA
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR006689Small_GTPase_ARF/SAR
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006499 N-terminal protein myristoylation
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0046686 response to cadmium ion
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005622 intracellular
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0005525 GTP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016004 phospholipase activator activity
molecular_function GO:0005215 transporter activity
molecular_function GO:0005507 copper ion binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU45791melon EST collection version 4.0transcribed_cluster
MU61107melon EST collection version 4.0transcribed_cluster

The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU45791MU45791transcribed_cluster
MU61107MU61107transcribed_cluster


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009966T2MELO3C009966T2mRNA
MELO3C009966T3MELO3C009966T3mRNA
MELO3C009966T1MELO3C009966T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005225Small GTP-binding protein domainTIGRFAMsTIGR00231TIGR00231coord: 16..157
score: 2.1
IPR006689Small GTPase superfamily, ARF/SAR typePRINTSPR00328SAR1GTPBPcoord: 74..99
score: 1.3E-19coord: 47..71
score: 1.3E-19coord: 19..42
score: 1.3E-19coord: 119..140
score: 1.3
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 5..177
score: 1.9
IPR024156Small GTPase superfamily, ARF typePROFILEPS51417ARFcoord: 11..177
score: 25
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 16..179
score: 1.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 13..178
score: 2.18
NoneNo IPR availablePANTHERPTHR11711ADP RIBOSYLATION FACTOR-RELATEDcoord: 1..180
score: 1.5E
NoneNo IPR availablePANTHERPTHR11711:SF181ADP-RIBOSYLATION FACTOR A1Fcoord: 1..180
score: 1.5E
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 18..180
score: 0.
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..181
score: 6.2E
NoneNo IPR availableSMARTSM00178sar_sub_1coord: 1..177
score: 2.1

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C009966Bhi11G001385Wax gourdmewgoB374
MELO3C009966CmoCh05G000180Cucurbita moschata (Rifu)cmomeB723
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
MELO3C009966MELO3C021556Melon (DHL92) v3.5.1memeB013
The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C009966Cucurbita pepo (Zucchini)cpemeB406
MELO3C009966Cucurbita pepo (Zucchini)cpemeB572
MELO3C009966Cucurbita pepo (Zucchini)cpemeB628
MELO3C009966Bottle gourd (USVL1VR-Ls)lsimeB216
MELO3C009966Bottle gourd (USVL1VR-Ls)lsimeB260
MELO3C009966Cucumber (Gy14) v2cgybmeB062
MELO3C009966Cucumber (Gy14) v2cgybmeB184
MELO3C009966Cucumber (Gy14) v2cgybmeB343
MELO3C009966Silver-seed gourdcarmeB0272
MELO3C009966Silver-seed gourdcarmeB0372
MELO3C009966Silver-seed gourdcarmeB0443
MELO3C009966Silver-seed gourdcarmeB0687
MELO3C009966Cucumber (Chinese Long) v3cucmeB070
MELO3C009966Cucumber (Chinese Long) v3cucmeB218
MELO3C009966Cucumber (Chinese Long) v3cucmeB407
MELO3C009966Watermelon (97103) v2mewmbB316
MELO3C009966Watermelon (97103) v2mewmbB341
MELO3C009966Watermelon (97103) v2mewmbB364
MELO3C009966Wax gourdmewgoB391
MELO3C009966Melon (DHL92) v3.5.1memeB071
MELO3C009966Cucumber (Gy14) v1cgymeB118
MELO3C009966Cucumber (Gy14) v1cgymeB340
MELO3C009966Cucumber (Gy14) v1cgymeB558
MELO3C009966Cucurbita maxima (Rimu)cmameB126
MELO3C009966Cucurbita maxima (Rimu)cmameB229
MELO3C009966Cucurbita maxima (Rimu)cmameB275
MELO3C009966Cucurbita maxima (Rimu)cmameB685
MELO3C009966Cucurbita moschata (Rifu)cmomeB116
MELO3C009966Cucurbita moschata (Rifu)cmomeB215
MELO3C009966Cucurbita moschata (Rifu)cmomeB266
MELO3C009966Cucurbita moschata (Rifu)cmomeB677
MELO3C009966Wild cucumber (PI 183967)cpimeB068
MELO3C009966Wild cucumber (PI 183967)cpimeB214
MELO3C009966Wild cucumber (PI 183967)cpimeB393
MELO3C009966Cucumber (Chinese Long) v2cumeB067
MELO3C009966Cucumber (Chinese Long) v2cumeB223
MELO3C009966Cucumber (Chinese Long) v2cumeB399
MELO3C009966Cucumber (Chinese Long) v2cumeB400
MELO3C009966Watermelon (Charleston Gray)mewcgB315
MELO3C009966Watermelon (Charleston Gray)mewcgB311
MELO3C009966Watermelon (97103) v1mewmB343
MELO3C009966Watermelon (97103) v1mewmB346
MELO3C009966Watermelon (97103) v1mewmB376