MELO3C009936 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C009936
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	nodulin MtN21 /EamA-like transporter family protein
Location	chr4 : 26810452 .. 26810601 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAAGGCGGAGTGCGCCACCGTCGGCTCCAACACCGGCTTCAAAGCCGCCACAGCTCGAGGCCTCAGCTACTATGTCTTCACCCTCTACGTTTGCATCGTCGCGGCCGCCGCCCTCATCCCTTTCGCCTTATTCTTCCATAAGTAA

mRNA sequence

ATGGTTAAGGCGGAGTGCGCCACCGTCGGCTCCAACACCGGCTTCAAAGCCGCCACAGCTCGAGGCCTCAGCTACTATGTCTTCACCCTCTACGTTTGCATCGTCGCGGCCGCCGCCCTCATCCCTTTCGCCTTATTCTTCCATAAGTAA

Coding sequence (CDS)

ATGGTTAAGGCGGAGTGCGCCACCGTCGGCTCCAACACCGGCTTCAAAGCCGCCACAGCTCGAGGCCTCAGCTACTATGTCTTCACCCTCTACGTTTGCATCGTCGCGGCCGCCGCCCTCATCCCTTTCGCCTTATTCTTCCATAAGTAA

Protein sequence

MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFFHK*

Homology

[Close]

BLAST of MELO3C009936 vs. Swiss-Prot
Match: WTR41_ARATH (WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-09
Identity = 29/47 (61.70%), Postives = 31/47 (65.96%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFF 48
          MV  EC TVGSNT FKAAT RGLS+YVF  Y  +VA   L+P +L F
Sbjct: 25 MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIF 71

[Close]

BLAST of MELO3C009936 vs. Swiss-Prot
Match: WTR42_ARATH (WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-08
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFF 48
          M   ECATVGSNT FKAAT RGLS+YVF  Y  IV+   L+P ++ F
Sbjct: 24 MFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIF 70

[Close]

BLAST of MELO3C009936 vs. TrEMBL
Match: A0A0A0LC97_CUCSA (WAT1-related protein OS=Cucumis sativus GN=Csa_3G835770 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.1e-16
Identity = 45/49 (91.84%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFFHK 50
          MV A  ATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFA FFHK
Sbjct: 16 MVAAMFATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFAFFFHK 64

[Close]

BLAST of MELO3C009936 vs. TrEMBL
Match: A0A0A0LHW6_CUCSA (WAT1-related protein OS=Cucumis sativus GN=Csa_3G835780 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-08
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFFHK 50
          M+ AECATVGSNT +KA +   +S+YVFT Y C+ AA  L+PFAL F +
Sbjct: 16 MIAAECATVGSNTVYKAISGHQISFYVFTFYTCLAAALVLLPFALIFRR 64

[Close]

BLAST of MELO3C009936 vs. TrEMBL
Match: V4LWV7_EUTSA (WAT1-related protein OS=Eutrema salsugineum GN=EUTSA_v10027813mg PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-07
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFF 48
          M+  EC TVGS T FKAAT RGLS+YVF LYV +VA   L+P +L F
Sbjct: 16 MIAVECVTVGSTTLFKAATLRGLSFYVFVLYVYVVATLVLLPLSLIF 62

[Close]

BLAST of MELO3C009936 vs. TrEMBL
Match: A0A0D3CT14_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.1e-07
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1


Query: 1   MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFFHK 50
           MV  EC TVGSNT FKAAT RGLS+YVF  Y  +VA   L+P +L F +
Sbjct: 371 MVAVECVTVGSNTLFKAATMRGLSFYVFVFYNYVVATLVLLPLSLLFRR 419

[Close]

BLAST of MELO3C009936 vs. TrEMBL
Match: A0A0D3CT14_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.0e-07
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFF 48
          MV  EC TVGSNT FKAAT RGLS+YV+  Y  +VA   L+P +L F
Sbjct: 25 MVSVECVTVGSNTLFKAATLRGLSFYVYIFYSYVVATIVLLPLSLIF 71

HSP 2 Score: 61.6 bits (148), Expect = 3.1e-07
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFFHK 50
          MV  EC TVGSNT FKAAT RGLS+YVF  Y  +VA   L+P +L F +
Sbjct: 24 MVAVECVTVGSNTLFKAATMRGLSFYVFVFYNYVVATLVLLPLSLLFRR 72

[Close]

BLAST of MELO3C009936 vs. TAIR10
Match: AT5G40230.1 (AT5G40230.1 nodulin MtN21 /EamA-like transporter family protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-10
Identity = 29/47 (61.70%), Postives = 31/47 (65.96%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFF 48
          MV  EC TVGSNT FKAAT RGLS+YVF  Y  +VA   L+P +L F
Sbjct: 25 MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIF 71

[Close]

BLAST of MELO3C009936 vs. TAIR10
Match: AT5G40240.2 (AT5G40240.2 nodulin MtN21 /EamA-like transporter family protein)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-09
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFF 48
          M   ECATVGSNT FKAAT RGLS+YVF  Y  IV+   L+P ++ F
Sbjct: 38 MFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIF 84

[Close]

BLAST of MELO3C009936 vs. TAIR10
Match: AT4G15540.1 (AT4G15540.1 EamA-like transporter family)

HSP 1 Score: 47.8 bits (112), Expect = 2.3e-06
Identity = 22/47 (46.81%), Postives = 27/47 (57.45%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFF 48
          M+  EC TVGS+  +KAAT RG S+YVF  Y  + A   L+  +L F
Sbjct: 21 MIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIF 67

[Close]

BLAST of MELO3C009936 vs. NCBI nr
Match: gi|659085554|ref|XP_008443482.1| (PREDICTED: WAT1-related protein At4g15540-like isoform X1 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 9.6e-18
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFFHK 50
          MV AECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFA FFHK
Sbjct: 17 MVAAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFAFFFHK 65

[Close]

BLAST of MELO3C009936 vs. NCBI nr
Match: gi|659085556|ref|XP_008443483.1| (PREDICTED: WAT1-related protein At4g15540-like isoform X2 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 9.6e-18
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFFHK 50
          MV AECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFA FFHK
Sbjct: 16 MVAAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFAFFFHK 64

[Close]

BLAST of MELO3C009936 vs. NCBI nr
Match: gi|778685742|ref|XP_011652265.1| (PREDICTED: WAT1-related protein At5g40240 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-15
Identity = 45/49 (91.84%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFFHK 50
          MV A  ATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFA FFHK
Sbjct: 16 MVAAMFATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFAFFFHK 64

[Close]

BLAST of MELO3C009936 vs. NCBI nr
Match: gi|700204507|gb|KGN59640.1| (hypothetical protein Csa_3G835770 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-15
Identity = 45/49 (91.84%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFFHK 50
          MV A  ATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFA FFHK
Sbjct: 16 MVAAMFATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFAFFFHK 64

[Close]

BLAST of MELO3C009936 vs. NCBI nr
Match: gi|449446642|ref|XP_004141080.1| (PREDICTED: WAT1-related protein At4g15540-like isoform X1 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 4.0e-08
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 1  MVKAECATVGSNTGFKAATARGLSYYVFTLYVCIVAAAALIPFALFFHK 50
          M+ AECATVGSNT +KA +   +S+YVFT Y C+ AA  L+PFAL F +
Sbjct: 16 MIAAECATVGSNTVYKAISGHQISFYVFTFYTCLAAALVLLPFALIFRR 64

The following BLAST results are available for this feature:

BLAST of MELO3C009936 vs. Swiss-Prot


Match Name	E-value	Identity	Description
WTR41_ARATH	2.1e-09	61.70	WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=3 SV=1	[more]
WTR42_ARATH	2.4e-08	59.57	WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1	[more]

BLAST of MELO3C009936 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC97_CUCSA	8.1e-16	91.84	WAT1-related protein OS=Cucumis sativus GN=Csa_3G835770 PE=3 SV=1	[more]
A0A0A0LHW6_CUCSA	2.8e-08	57.14	WAT1-related protein OS=Cucumis sativus GN=Csa_3G835780 PE=3 SV=1	[more]
V4LWV7_EUTSA	1.8e-07	61.70	WAT1-related protein OS=Eutrema salsugineum GN=EUTSA_v10027813mg PE=3 SV=1	[more]
A0A0D3CT14_BRAOL	3.1e-07	59.18	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A0D3CT14_BRAOL	9.0e-07	59.57	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of MELO3C009936 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G40230.1	1.2e-10	61.70	nodulin MtN21 /EamA-like transporter family protein	[more]
AT5G40240.2	1.3e-09	59.57	nodulin MtN21 /EamA-like transporter family protein	[more]
AT4G15540.1	2.3e-06	46.81	EamA-like transporter family	[more]

BLAST of MELO3C009936 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085554\|ref\|XP_008443482.1\|	9.6e-18	95.92	PREDICTED: WAT1-related protein At4g15540-like isoform X1 [Cucumis melo]	[more]
gi\|659085556\|ref\|XP_008443483.1\|	9.6e-18	95.92	PREDICTED: WAT1-related protein At4g15540-like isoform X2 [Cucumis melo]	[more]
gi\|778685742\|ref\|XP_011652265.1\|	1.2e-15	91.84	PREDICTED: WAT1-related protein At5g40240 [Cucumis sativus]	[more]
gi\|700204507\|gb\|KGN59640.1\|	1.2e-15	91.84	hypothetical protein Csa_3G835770 [Cucumis sativus]	[more]
gi\|449446642\|ref\|XP_004141080.1\|	4.0e-08	57.14	PREDICTED: WAT1-related protein At4g15540-like isoform X1 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009936T1	MELO3C009936T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C009936	Cla017070	Watermelon (97103) v1	mewmB346
MELO3C009936	ClCG10G014440	Watermelon (Charleston Gray)	mewcgB315
MELO3C009936	Cla97C10G197280	Watermelon (97103) v2	mewmbB316

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C009936	Silver-seed gourd	carmeB0443
MELO3C009936	Silver-seed gourd	carmeB0989
MELO3C009936	Cucumber (Chinese Long) v3	cucmeB069
MELO3C009936	Cucumber (Chinese Long) v3	cucmeB070
MELO3C009936	Cucumber (Chinese Long) v3	cucmeB218
MELO3C009936	Watermelon (97103) v2	mewmbB364
MELO3C009936	Wax gourd	mewgoB380
MELO3C009936	Wax gourd	mewgoB391
MELO3C009936	Melon (DHL92) v3.5.1	memeB013
MELO3C009936	Melon (DHL92) v3.5.1	memeB071
MELO3C009936	Cucumber (Gy14) v1	cgymeB118
MELO3C009936	Cucumber (Gy14) v1	cgymeB558
MELO3C009936	Cucurbita maxima (Rimu)	cmameB126
MELO3C009936	Cucurbita maxima (Rimu)	cmameB229
MELO3C009936	Cucurbita maxima (Rimu)	cmameB685
MELO3C009936	Cucurbita moschata (Rifu)	cmomeB116
MELO3C009936	Cucurbita moschata (Rifu)	cmomeB215
MELO3C009936	Cucurbita moschata (Rifu)	cmomeB677
MELO3C009936	Wild cucumber (PI 183967)	cpimeB068
MELO3C009936	Wild cucumber (PI 183967)	cpimeB214
MELO3C009936	Cucumber (Chinese Long) v2	cumeB066
MELO3C009936	Cucumber (Chinese Long) v2	cumeB067
MELO3C009936	Cucumber (Chinese Long) v2	cumeB223
MELO3C009936	Watermelon (Charleston Gray)	mewcgB311
MELO3C009936	Watermelon (97103) v1	mewmB343
MELO3C009936	Cucurbita pepo (Zucchini)	cpemeB572
MELO3C009936	Cucurbita pepo (Zucchini)	cpemeB628
MELO3C009936	Bottle gourd (USVL1VR-Ls)	lsimeB216
MELO3C009936	Bottle gourd (USVL1VR-Ls)	lsimeB260
MELO3C009936	Cucumber (Gy14) v2	cgybmeB062
MELO3C009936	Cucumber (Gy14) v2	cgybmeB184