MELO3C009816 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C009816
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative Athila retroelement ORF1 protein
Locationchr4 : 27819988 .. 27820141 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGAATATAAGACTGTAGCTCTAACGTCGGCAACAAACGCCGTCTTCAAGAATGGGGTACCAGAGAAGATAACAAATCCTAAAAGCTTCACAGTGCCCTGCTCAATAGACGACGTGGATCTTGGTTGCACGCTATGCGATCTTGGAGCAA

mRNA sequence

ATGACCGAATATAAGACTGTAGCTCTAACGTCGGCAACAAACGCCGTCTTCAAGAATGGGGTACCAGAGAAGATAACAAATCCTAAAAGCTTCACAGTGCCCTGCTCAATAGACGACGTGGATCTTGGTTGCACGCTATGCGATCTTGGAGCAA

Coding sequence (CDS)

ATGACCGAATATAAGACTGTAGCTCTAACGTCGGCAACAAACGCCGTCTTCAAGAATGGGGTACCAGAGAAGATAACAAATCCTAAAAGCTTCACAGTGCCCTGCTCAATAGACGACGTGGATCTTGGTTGCACGCTATGCGATCTTGGAGCAA

Protein sequence

MTEYKTVALTSATNAVFKNGVPEKITNPKSFTVPCSIDDVDLGCTLCDLGA
Homology
[Close]
BLAST of MELO3C009816 vs. NCBI nr
Match: gi|659111569|ref|XP_008455795.1| (PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-10
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1 

Query: 1  MTEYKTVALTSATNAVFKNGVPEKITNPKSFTVPCSIDDVDLGCTLCDLGA 52
          M EY+TV LT AT+ +FKN V +K+T P+SFTV CSIDD+DLG TLC+LGA
Sbjct: 27 MNEYETVTLTQATSNIFKNMVQKKMTYPRSFTVSCSIDDMDLGHTLCNLGA 77

[Close]
BLAST of MELO3C009816 vs. NCBI nr
Match: gi|659093662|ref|XP_008447648.1| (PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-08
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1 

Query: 1  MTEYKTVALTSATNAVFKNGVPEKITNPKSFTVPCSIDDVDLGCTLCDLGA 52
          + +++T+AL  AT+ ++KNGV EK+T P SF VPCSID +DLG  LCDLGA
Sbjct: 18 INDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGA 68

[Close]
BLAST of MELO3C009816 vs. NCBI nr
Match: gi|659130345|ref|XP_008465121.1| (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 7.0e-08
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1 

Query: 5  KTVALTSATNAVFKNGVPEKITNPKSFTVPCSIDDVDLGCTLCDLGA 52
          +TVALT  T+ + KNG P+K+T+ +SFTVPCSI+++DLG  LCDLGA
Sbjct: 11 ETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGA 57

[Close]
BLAST of MELO3C009816 vs. NCBI nr
Match: gi|698484224|ref|XP_009788925.1| (PREDICTED: uncharacterized protein LOC104236653 [Nicotiana sylvestris])

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-06
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 

Query: 1   MTEYKTVALTSATNAVFKNGVPEKITNPKSFTVPCSIDDVDLGCTLCDLG 51
           +TE++TVALT    +  +N +P+K+ +P SFT+P  I ++D+GC LCDLG
Sbjct: 343 LTEFETVALTEECTSRVQNKLPQKLKDPSSFTIPVRIGNIDVGCALCDLG 392

[Close]
BLAST of MELO3C009816 vs. NCBI nr
Match: gi|697176733|ref|XP_009597316.1| (PREDICTED: uncharacterized protein LOC104093293 [Nicotiana tomentosiformis])

HSP 1 Score: 58.5 bits (140), Expect = 3.8e-06
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 1 

Query: 1   MTEYKTVALTSATNAVFKNGVPEKITNPKSFTVPCSIDDVDLGCTLCDLGA 52
           +TE++TVALT    +  +N +P+K+ +P  FT+P  I ++D+GC LCDLGA
Sbjct: 160 LTEFETVALTEECTSRVQNKLPQKLKDPGIFTIPVRIGNIDMGCALCDLGA 210

The following BLAST results are available for this feature:
BLAST of MELO3C009816 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111569|ref|XP_008455795.1|2.0e-1066.67PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo][more]
gi|659093662|ref|XP_008447648.1|1.8e-0858.82PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo][more]
gi|659130345|ref|XP_008465121.1|7.0e-0861.70PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo][more]
gi|698484224|ref|XP_009788925.1|1.7e-0648.00PREDICTED: uncharacterized protein LOC104236653 [Nicotiana sylvestris][more]
gi|697176733|ref|XP_009597316.1|3.8e-0647.06PREDICTED: uncharacterized protein LOC104093293 [Nicotiana tomentosiformis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009816T1MELO3C009816T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C009816Cucurbita pepo (Zucchini)cpemeB572
MELO3C009816Bottle gourd (USVL1VR-Ls)lsimeB260
MELO3C009816Cucumber (Gy14) v2cgybmeB184
MELO3C009816Silver-seed gourdcarmeB0323
MELO3C009816Silver-seed gourdcarmeB0443
MELO3C009816Cucumber (Chinese Long) v3cucmeB218
MELO3C009816Watermelon (97103) v2mewmbB316
MELO3C009816Wax gourdmewgoB377
MELO3C009816Wax gourdmewgoB380
MELO3C009816Cucumber (Gy14) v1cgymeB558
MELO3C009816Cucurbita maxima (Rimu)cmameB229
MELO3C009816Cucurbita maxima (Rimu)cmameB753
MELO3C009816Cucurbita moschata (Rifu)cmomeB215
MELO3C009816Cucurbita moschata (Rifu)cmomeB745
MELO3C009816Wild cucumber (PI 183967)cpimeB214
MELO3C009816Cucumber (Chinese Long) v2cumeB223
MELO3C009816Watermelon (Charleston Gray)mewcgB315
MELO3C009816Watermelon (97103) v1mewmB346