MELO3C009774 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C009774
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Pentatricopeptide repeat-containing family protein
Location	chr4 : 28229710 .. 28231086 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTTTCTTGGAATGGTAAGATTGCTGCCTATGCTCATCATGGCCATGGCCACAAAGCAATTTGTTCATTTGATGAAATGCAGGCATTGGGATTTCGTCCTGATAATGTCACCTATATTGCATTGCTTTCCGCTTGTAGTCATGCCGTTAAGAGATAGGTCTATAAAACTAAGAGAAGATCATTTTACATGCCTGGTCGATCTTTTTGGTCGAGCCGGACGACTTCAAGAGGCATTTGATTTCATTAAGGGGCTTTCGGCATCTGGTTGGGCAGCTCCTCTTGCTGGATGTAATGTTCATGGTAGGGGTGAGTATGGTAGGCCGAAAAACCGAAACGACCGACCAAAATCGACTGAACTGAAGTAAGTGAAGGTGTCCTTTTCGGTTTTGTTGTAAAAAACCAACTTGTGGTCAGTCCGTTTGGGTTGGAAGGGCGAGACCCAACCGACCAAACTCTTTTTTTTCTCTCGCTTAGTTTATTCAAACATATGTATATATAAAAGTAATTTTTATTTTCAGGGTGAAGTGAATTTGCAATTAACTTTATTTATTTACTTTCTGAAAAATTAAAATTTATCAGACTTGTTAAATTCATTTTATATGTTTAAAAAATTTGCGGCATATTATCTATTTACTACATTGATTTTAGGGATTTTTTCAAAAATAGAAAAAATTAACAAACTATTTACCATCTAGGGAACAAAACCATCCAACAACAAAATTTACTACACTCAGATTTTTTTTACAAATTGTAAATATTTTGTGAAATGTTATATTTTTTTATAATTTTCCTTGATTTTATTTTTGTAGTATATATACGATCTGATTTTTATGTTTTTACTAAATAAGGAGAGAGTAGAAAGCAAAGTGAAGTAAGAAGAAAAAAAAACCAACCAAAACCGATCCCGACCACAGTCGGTCGGTTTTGTTGTTAACGGCGGCCAGCATCGGGTCAACAATTTCCATAGGGAATTGTGGTCAGTTGGAGTCAGTTTGGCCGGAAAACTGACTCCCGACCATTGATCACCCCTGGTTCGTGGGCATATAGATCTAGGTTAGTCAAAGGCTGAAAAACTTTTAGAAACAGAGCCAGAGAATGAAGGAACCTTTTTGGTGTTATCTAACATATATGCTTCAACTGGAAAATGGAGAGAAGCTGCTAGAGTAAGGATGAAAATGAAGGACAAAGGATTGAAGAAGCAGCCTGGTTGCAGTTGGATAGACGTTGGAAATACAGTGCATGCATTCGTAGTGGATGACAATTCTCATTGCGAATTTAAAAATACTTACCTTTTACTTCACGATCTACATACGAAAATGAAGAAGATTGGTCATACATTGTATGAAGATTTAACTATGGATTTCAATTTATGA

mRNA sequence

ATGTGGTTTCTTGGAATGGTAAGATTGCTGCCTATGCTCATCATGGCCATGGCCACAAAGCAATTTGTTCATTTGATGAAATGCAGGCATTGGGATTTCGTCCTGATAATGTCACCTATATTGCATTGCTTTCCGCTTGTAGTCATGCCGTTAAGAGATAGGTCTATAAAACTAAGAGAAGATCATTTTACATGCCTGGTCGATCTTTTTGGTCGAGCCGGACGACTTCAAGAGGCATTTGATTTCATTAAGGGGCTTTCGGCATCTGGTTGGGCAGCTCCTCTTGCTGGATGTAATGTTCATGGTAGGGAAACAGAGCCAGAGAATGAAGGAACCTTTTTGGTGTTATCTAACATATATGCTTCAACTGGAAAATGGAGAGAAGCTGCTAGAGTAAGGATGAAAATGAAGGACAAAGGATTGAAGAAGCAGCCTGGTTGCAGTTGGATAGACGTTGGAAATACAGTGCATGCATTCGTAGTGGATGACAATTCTCATTGCGAATTTAAAAATACTTACCTTTTACTTCACGATCTACATACGAAAATGAAGAAGATTGGTCATACATTGTATGAAGATTTAACTATGGATTTCAATTTATGA

Coding sequence (CDS)

ATGTGGTTTCTTGGAATGGTAAGATTGCTGCCTATGCTCATCATGGCCATGGCCACAAAGCAATTTGTTCATTTGATGAAATGCAGGCATTGGGATTTCGTCCTGATAATGTCACCTATATTGCATTGCTTTCCGCTTGTAGTCATGCCGTTAAGAGATAGGTCTATAAAACTAAGAGAAGATCATTTTACATGCCTGGTCGATCTTTTTGGTCGAGCCGGACGACTTCAAGAGGCATTTGATTTCATTAAGGGGCTTTCGGCATCTGGTTGGGCAGCTCCTCTTGCTGGATGTAATGTTCATGGTAGGGAAACAGAGCCAGAGAATGAAGGAACCTTTTTGGTGTTATCTAACATATATGCTTCAACTGGAAAATGGAGAGAAGCTGCTAGAGTAAGGATGAAAATGAAGGACAAAGGATTGAAGAAGCAGCCTGGTTGCAGTTGGATAGACGTTGGAAATACAGTGCATGCATTCGTAGTGGATGACAATTCTCATTGCGAATTTAAAAATACTTACCTTTTACTTCACGATCTACATACGAAAATGAAGAAGATTGGTCATACATTGTATGAAGATTTAACTATGGATTTCAATTTATGA

Protein sequence

MWFLGMVRLLPMLIMAMATKQFVHLMKCRHWDFVLIMSPILHCFPLVVMPLRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLSASGWAAPLAGCNVHGRETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNTVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL*

Homology

[Close]

BLAST of MELO3C009774 vs. Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-33
Identity = 76/151 (50.33%), Postives = 97/151 (64.24%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIK----GLSASGWAAPLAGCNVHGR--- 110
           +RD S+ LRE+H+TCLVDL GRAGRL++  +FI      LS S + A L+ CNVH     
Sbjct: 461 VRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSI 520

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ET  ++ GT++++SNIYA+ GK  EAA +RMKMK+KGLKKQPGCSW+ VG 
Sbjct: 521 AKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGK 580

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKK 186
             H FVV D SH +F+    +L DL  KM+K
Sbjct: 581 QNHLFVVGDKSHPQFEALDSILSDLRNKMRK 611

[Close]

BLAST of MELO3C009774 vs. Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-26
Identity = 59/144 (40.97%), Postives = 88/144 (61.11%), Query Frame = 1


Query: 61  DHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGRETE---------- 120
           DH+  L+DL  R+G+  +A   I+ L    +A  W A L+GC VHG              
Sbjct: 555 DHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFG 614

Query: 121 --PENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNTVHAFVVDDN 180
             PE++GT+++LSN++A+TG+W E ARVR  M+D+G+KK+  CSWI++   VH F+VDD 
Sbjct: 615 LIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDT 674

Query: 181 SHCEFKNTYLLLHDLHTKMKKIGH 189
           SH E +  Y+ L DL  +M+++G+
Sbjct: 675 SHPEAEAVYIYLQDLGKEMRRLGY 698

[Close]

BLAST of MELO3C009774 vs. Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-25
Identity = 59/153 (38.56%), Postives = 86/153 (56.21%), Query Frame = 1


Query: 52  RDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR---- 111
           +D  +     H+ C+VDL GRAG L++A + +K +     A+ W   L    VHG     
Sbjct: 538 QDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 597

Query: 112 ET--------EPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNT 171
           ET        EPEN G +++LSN+YAS+G+W +  ++R++M+DKG+KK PG SWI++ N 
Sbjct: 598 ETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNK 657

Query: 172 VHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGH 189
            H F V D  H E    +  L +L  +MKK G+
Sbjct: 658 THTFSVGDEFHPEKDEIFAFLEELDLRMKKAGY 690

[Close]

BLAST of MELO3C009774 vs. Swiss-Prot
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-25
Identity = 61/156 (39.10%), Postives = 84/156 (53.85%), Query Frame = 1


Query: 49  MPLRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR- 108
           M   +  IK R +H++C+V+L GRAG+LQEA+D IK +     +  W A L  C +    
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 109 -----------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDV 168
                        EPEN GT+++LSNIYA+ G W E   +R KM+  GLKK PGCSWI V
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 169 GNTVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGH 189
            N V+  +  D SH +       + ++  +M+K GH
Sbjct: 634 KNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGH 669

[Close]

BLAST of MELO3C009774 vs. Swiss-Prot
Match: PP189_ARATH (Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-25
Identity = 63/154 (40.91%), Postives = 84/154 (54.55%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLSA--------SGWAAPLAGCNVH- 110
           ++D  I L  DH TC++D+FGR G L EA D     S+        S W   L  C+ H 
Sbjct: 465 VKDYRIPLEVDHVTCMIDMFGRGGHLAEAKDLATTYSSLVTDSSNNSSWETLLGACSTHW 524

Query: 111 ----GRET-------EPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWI 170
               GRE        EP  E +F++LSN+Y STG+W+E   VR +M ++G+KK PGCSWI
Sbjct: 525 HTELGREVSKVLKIAEPSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTPGCSWI 584

Query: 171 DVGNTVHAFVVDDNSHCEFKNTYLLLHDLHTKMK 185
           +VGN V  FVV D+SH   +     L+ L  +M+
Sbjct: 585 EVGNQVSTFVVGDSSHPRLEELSETLNCLQHEMR 618

[Close]

BLAST of MELO3C009774 vs. TrEMBL
Match: A0A0A0LCG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822150 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 5.1e-69
Identity = 136/166 (81.93%), Postives = 141/166 (84.94%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           +RDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL    SAS WAA LAGCNVHG    
Sbjct: 481 VRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDL 540

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ETEPEN GT+LVLSNIYASTGKWREAA VRMKMKDKGLKKQPGCSWI+VGN
Sbjct: 541 GKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGN 600

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
           TVH FVV DNSH EF+N YLLLHDLHTKMKKIGHTLYEDLT+DFNL
Sbjct: 601 TVHVFVVGDNSHREFENIYLLLHDLHTKMKKIGHTLYEDLTIDFNL 646

[Close]

BLAST of MELO3C009774 vs. TrEMBL
Match: M5VX02_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb002215mg PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.3e-48
Identity = 101/165 (61.21%), Postives = 124/165 (75.15%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           LRD SI++REDH+TCLVDL GRAGRL+EAF+ ++ L    SAS W A LAGCNVHG    
Sbjct: 468 LRDGSIQVREDHYTCLVDLCGRAGRLKEAFNVLEKLGTKISASVWGALLAGCNVHGNMDI 527

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    E EPE  GT+L+L NIYAS+GKWREAA++RMKMK+KGLKKQPGCSWI+VGN
Sbjct: 528 GKLAAEKLLEGEPEKAGTYLLLCNIYASSGKWREAAKIRMKMKEKGLKKQPGCSWIEVGN 587

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFN 200
            VH FVV D SH + +  Y L+++LH +MKKIG+  Y+DLT+D N
Sbjct: 588 KVHVFVVGDKSHYQSELIYSLIYNLHERMKKIGYIPYDDLTVDDN 632

[Close]

BLAST of MELO3C009774 vs. TrEMBL
Match: F6HLQ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05520 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.0e-48
Identity = 103/163 (63.19%), Postives = 116/163 (71.17%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           ++DRSI +REDH+ CLVDL GRAGRL+EAF FI+ L    SA  W A LAGCNVH     
Sbjct: 482 VKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKI 541

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    E EPEN GT+L+LSNIYASTGKWREAARVR+KMKDKGLKKQPGCSWI+VGN
Sbjct: 542 GKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGN 601

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMD 198
            VH FVV D SH + K  Y LL DLH+KMKK G+    D   D
Sbjct: 602 RVHVFVVGDKSHSQSKLIYSLLRDLHSKMKKAGYEPNNDFISD 644

[Close]

BLAST of MELO3C009774 vs. TrEMBL
Match: A0A0A0LBS7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822170 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 89/97 (91.75%), Postives = 92/97 (94.85%), Query Frame = 1


Query: 104 ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNTVHAFVVDD 163
           ETEPEN GTFL+LSN YASTGKWREAARVR K KDKGLKKQPGCSWIDVGNTVHAFVVDD
Sbjct: 11  ETEPENAGTFLLLSNTYASTGKWREAARVRKKTKDKGLKKQPGCSWIDVGNTVHAFVVDD 70

Query: 164 NSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
           NSHCEF+N YLLLHDLHTKMKKIGHTL+EDLTMDFNL
Sbjct: 71  NSHCEFENIYLLLHDLHTKMKKIGHTLHEDLTMDFNL 107

[Close]

BLAST of MELO3C009774 vs. TrEMBL
Match: V7CTG1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G068400g PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.2e-45
Identity = 96/166 (57.83%), Postives = 118/166 (71.08%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGRET- 110
           L++RSI+LREDH+ CL+DL GRAGRL+EAFD I+GL    S + W A LAGCNVHG    
Sbjct: 450 LKNRSIQLREDHYACLIDLCGRAGRLKEAFDIIEGLGEEASLTVWGALLAGCNVHGNADI 509

Query: 111 -----------EPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                      EP+N GT+ +LSN+YAS GKW+EAA VRMKMKD+GLKKQPGCSWI+VGN
Sbjct: 510 GKLVAEKILIIEPQNAGTYSLLSNMYASAGKWKEAANVRMKMKDRGLKKQPGCSWIEVGN 569

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
           TV  FVV D SH +++    LL D+HTKMKK   T + DL ++  L
Sbjct: 570 TVQVFVVGDKSHSQYELLGHLLDDIHTKMKKAMDTPHNDLLINVEL 615

[Close]

BLAST of MELO3C009774 vs. TAIR10
Match: AT2G35030.1 (AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 144.8 bits (364), Expect = 5.7e-35
Identity = 76/151 (50.33%), Postives = 97/151 (64.24%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIK----GLSASGWAAPLAGCNVHGR--- 110
           +RD S+ LRE+H+TCLVDL GRAGRL++  +FI      LS S + A L+ CNVH     
Sbjct: 461 VRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSI 520

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ET  ++ GT++++SNIYA+ GK  EAA +RMKMK+KGLKKQPGCSW+ VG 
Sbjct: 521 AKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGK 580

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKK 186
             H FVV D SH +F+    +L DL  KM+K
Sbjct: 581 QNHLFVVGDKSHPQFEALDSILSDLRNKMRK 611

[Close]

BLAST of MELO3C009774 vs. TAIR10
Match: AT1G25360.1 (AT1G25360.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-27
Identity = 59/144 (40.97%), Postives = 88/144 (61.11%), Query Frame = 1


Query: 61  DHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGRETE---------- 120
           DH+  L+DL  R+G+  +A   I+ L    +A  W A L+GC VHG              
Sbjct: 555 DHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFG 614

Query: 121 --PENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNTVHAFVVDDN 180
             PE++GT+++LSN++A+TG+W E ARVR  M+D+G+KK+  CSWI++   VH F+VDD 
Sbjct: 615 LIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDT 674

Query: 181 SHCEFKNTYLLLHDLHTKMKKIGH 189
           SH E +  Y+ L DL  +M+++G+
Sbjct: 675 SHPEAEAVYIYLQDLGKEMRRLGY 698

[Close]

BLAST of MELO3C009774 vs. TAIR10
Match: AT4G02750.1 (AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 7.4e-27
Identity = 59/153 (38.56%), Postives = 86/153 (56.21%), Query Frame = 1


Query: 52  RDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR---- 111
           +D  +     H+ C+VDL GRAG L++A + +K +     A+ W   L    VHG     
Sbjct: 538 QDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELA 597

Query: 112 ET--------EPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGNT 171
           ET        EPEN G +++LSN+YAS+G+W +  ++R++M+DKG+KK PG SWI++ N 
Sbjct: 598 ETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNK 657

Query: 172 VHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGH 189
            H F V D  H E    +  L +L  +MKK G+
Sbjct: 658 THTFSVGDEFHPEKDEIFAFLEELDLRMKKAGY 690

[Close]

BLAST of MELO3C009774 vs. TAIR10
Match: AT1G20230.1 (AT1G20230.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 117.5 bits (293), Expect = 9.7e-27
Identity = 61/156 (39.10%), Postives = 84/156 (53.85%), Query Frame = 1


Query: 49  MPLRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR- 108
           M   +  IK R +H++C+V+L GRAG+LQEA+D IK +     +  W A L  C +    
Sbjct: 514 MMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNV 573

Query: 109 -----------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDV 168
                        EPEN GT+++LSNIYA+ G W E   +R KM+  GLKK PGCSWI V
Sbjct: 574 DLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQV 633

Query: 169 GNTVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGH 189
            N V+  +  D SH +       + ++  +M+K GH
Sbjct: 634 KNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGH 669

[Close]

BLAST of MELO3C009774 vs. TAIR10
Match: AT2G36980.1 (AT2G36980.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-26
Identity = 63/154 (40.91%), Postives = 84/154 (54.55%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLSA--------SGWAAPLAGCNVH- 110
           ++D  I L  DH TC++D+FGR G L EA D     S+        S W   L  C+ H 
Sbjct: 465 VKDYRIPLEVDHVTCMIDMFGRGGHLAEAKDLATTYSSLVTDSSNNSSWETLLGACSTHW 524

Query: 111 ----GRET-------EPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWI 170
               GRE        EP  E +F++LSN+Y STG+W+E   VR +M ++G+KK PGCSWI
Sbjct: 525 HTELGREVSKVLKIAEPSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTPGCSWI 584

Query: 171 DVGNTVHAFVVDDNSHCEFKNTYLLLHDLHTKMK 185
           +VGN V  FVV D+SH   +     L+ L  +M+
Sbjct: 585 EVGNQVSTFVVGDSSHPRLEELSETLNCLQHEMR 618

[Close]

BLAST of MELO3C009774 vs. NCBI nr
Match: gi|700204330|gb|KGN59463.1| (hypothetical protein Csa_3G822150 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 7.4e-69
Identity = 136/166 (81.93%), Postives = 141/166 (84.94%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           +RDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL    SAS WAA LAGCNVHG    
Sbjct: 481 VRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDL 540

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ETEPEN GT+LVLSNIYASTGKWREAA VRMKMKDKGLKKQPGCSWI+VGN
Sbjct: 541 GKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGN 600

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
           TVH FVV DNSH EF+N YLLLHDLHTKMKKIGHTLYEDLT+DFNL
Sbjct: 601 TVHVFVVGDNSHREFENIYLLLHDLHTKMKKIGHTLYEDLTIDFNL 646

[Close]

BLAST of MELO3C009774 vs. NCBI nr
Match: gi|778688896|ref|XP_011652860.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 7.4e-69
Identity = 136/166 (81.93%), Postives = 141/166 (84.94%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           +RDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL    SAS WAA LAGCNVHG    
Sbjct: 443 VRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDL 502

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ETEPEN GT+LVLSNIYASTGKWREAA VRMKMKDKGLKKQPGCSWI+VGN
Sbjct: 503 GKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGN 562

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
           TVH FVV DNSH EF+N YLLLHDLHTKMKKIGHTLYEDLT+DFNL
Sbjct: 563 TVHVFVVGDNSHREFENIYLLLHDLHTKMKKIGHTLYEDLTIDFNL 608

[Close]

BLAST of MELO3C009774 vs. NCBI nr
Match: gi|659085176|ref|XP_008443284.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 6.9e-67
Identity = 134/166 (80.72%), Postives = 137/166 (82.53%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFI GL    S S WAA LAGCNVHG    
Sbjct: 390 LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFINGLEVKPSTSVWAALLAGCNVHGHIDL 449

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    ETEPEN GTFLVLSNIYASTGKWREAA VRMKMKDKGLKKQPGCSWI+VGN
Sbjct: 450 GKLTAEKLLETEPENAGTFLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGN 509

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFNL 201
           TVH FVV DNS+ EF+N Y LLHDLHTKMKKIGH LYEDLTMDFNL
Sbjct: 510 TVHVFVVGDNSYREFENIYRLLHDLHTKMKKIGHILYEDLTMDFNL 555

[Close]

BLAST of MELO3C009774 vs. NCBI nr
Match: gi|1009164639|ref|XP_015900607.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 206.5 bits (524), Expect = 4.5e-50
Identity = 104/163 (63.80%), Postives = 121/163 (74.23%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           +RDRSI++REDHFTC VDL GRAGRL+EAFDFI  L    SAS W A LAGCNVHG    
Sbjct: 479 VRDRSIRVREDHFTCFVDLCGRAGRLKEAFDFIAQLETKPSASVWGALLAGCNVHGNMNI 538

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    E EPEN G++L+LSNIYAS+GKWREAA++R+KMK+KGLKKQPGCSWI+VGN
Sbjct: 539 GKLAAQKLLEDEPENSGSYLLLSNIYASSGKWREAAKMRLKMKEKGLKKQPGCSWIEVGN 598

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMD 198
            +H FVV D SHC+ K    LL DLH  MKKIGH    DLT++
Sbjct: 599 KIHVFVVGDKSHCQSKIICSLLSDLHELMKKIGHVPNSDLTVE 641

[Close]

BLAST of MELO3C009774 vs. NCBI nr
Match: gi|595818869|ref|XP_007204422.1| (hypothetical protein PRUPE_ppb002215mg [Prunus persica])

HSP 1 Score: 201.1 bits (510), Expect = 1.9e-48
Identity = 101/165 (61.21%), Postives = 124/165 (75.15%), Query Frame = 1


Query: 51  LRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGL----SASGWAAPLAGCNVHGR--- 110
           LRD SI++REDH+TCLVDL GRAGRL+EAF+ ++ L    SAS W A LAGCNVHG    
Sbjct: 468 LRDGSIQVREDHYTCLVDLCGRAGRLKEAFNVLEKLGTKISASVWGALLAGCNVHGNMDI 527

Query: 111 ---------ETEPENEGTFLVLSNIYASTGKWREAARVRMKMKDKGLKKQPGCSWIDVGN 170
                    E EPE  GT+L+L NIYAS+GKWREAA++RMKMK+KGLKKQPGCSWI+VGN
Sbjct: 528 GKLAAEKLLEGEPEKAGTYLLLCNIYASSGKWREAAKIRMKMKEKGLKKQPGCSWIEVGN 587

Query: 171 TVHAFVVDDNSHCEFKNTYLLLHDLHTKMKKIGHTLYEDLTMDFN 200
            VH FVV D SH + +  Y L+++LH +MKKIG+  Y+DLT+D N
Sbjct: 588 KVHVFVVGDKSHYQSELIYSLIYNLHERMKKIGYIPYDDLTVDDN 632

The following BLAST results are available for this feature:

BLAST of MELO3C009774 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP185_ARATH	1.0e-33	50.33	Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidop...	[more]
PPR57_ARATH	2.0e-26	40.97	Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN...	[more]
PP301_ARATH	1.3e-25	38.56	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN...	[more]
PPR53_ARATH	1.7e-25	39.10	Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN...	[more]
PP189_ARATH	2.2e-25	40.91	Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidop...	[more]

BLAST of MELO3C009774 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCG2_CUCSA	5.1e-69	81.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822150 PE=4 SV=1	[more]
M5VX02_PRUPE	1.3e-48	61.21	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb002215mg PE=4 SV=1	[more]
F6HLQ6_VITVI	5.0e-48	63.19	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05520 PE=4 SV=...	[more]
A0A0A0LBS7_CUCSA	1.0e-45	91.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822170 PE=4 SV=1	[more]
V7CTG1_PHAVU	5.2e-45	57.83	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G068400g PE=4 SV=1	[more]

BLAST of MELO3C009774 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35030.1	5.7e-35	50.33	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G25360.1	1.1e-27	40.97	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G02750.1	7.4e-27	38.56	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G20230.1	9.7e-27	39.10	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G36980.1	1.3e-26	40.91	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of MELO3C009774 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204330\|gb\|KGN59463.1\|	7.4e-69	81.93	hypothetical protein Csa_3G822150 [Cucumis sativus]	[more]
gi\|778688896\|ref\|XP_011652860.1\|	7.4e-69	81.93	PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial ...	[more]
gi\|659085176\|ref\|XP_008443284.1\|	6.9e-67	80.72	PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial ...	[more]
gi\|1009164639\|ref\|XP_015900607.1\|	4.5e-50	63.80	PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-...	[more]
gi\|595818869\|ref\|XP_007204422.1\|	1.9e-48	61.21	hypothetical protein PRUPE_ppb002215mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008568	microtubule-severing ATPase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009774T1	MELO3C009774T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 63..84 score: 0.045coord: 112..141 score: 0
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 109..143 score: 9.032coord: 59..93 score: 7
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 51..150 score: 1.9
None	No IPR available	PANTHER	PTHR24015:SF379	SUBFAMILY NOT NAMED	coord: 51..150 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C009774	Csa3G822170	Cucumber (Chinese Long) v2	cumeB223
MELO3C009774	Cla002894	Watermelon (97103) v1	mewmB346
MELO3C009774	ClCG10G016060	Watermelon (Charleston Gray)	mewcgB315
MELO3C009774	Cla97C10G198940	Watermelon (97103) v2	mewmbB316
MELO3C009774	Bhi11G002354	Wax gourd	mewgoB380
MELO3C009774	CSPI03G37990	Wild cucumber (PI 183967)	cpimeB214
MELO3C009774	Cucsa.337920	Cucumber (Gy14) v1	cgymeB558
MELO3C009774	CmaCh14G005200	Cucurbita maxima (Rimu)	cmameB229
MELO3C009774	CmoCh14G005240	Cucurbita moschata (Rifu)	cmomeB215
MELO3C009774	Lsi03G015930	Bottle gourd (USVL1VR-Ls)	lsimeB260
MELO3C009774	CsGy3G035460	Cucumber (Gy14) v2	cgybmeB184
MELO3C009774	Carg03476	Silver-seed gourd	carmeB0251

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C009774	Cucurbita maxima (Rimu)	cmameB602
MELO3C009774	Cucurbita maxima (Rimu)	cmameB752
MELO3C009774	Cucurbita moschata (Rifu)	cmomeB744
MELO3C009774	Cucurbita pepo (Zucchini)	cpemeB572
MELO3C009774	Cucurbita pepo (Zucchini)	cpemeB797
MELO3C009774	Bottle gourd (USVL1VR-Ls)	lsimeB144
MELO3C009774	Cucumber (Chinese Long) v3	cucmeB218
MELO3C009774	Wax gourd	mewgoB423