MELO3C009751 (gene) Melon (DHL92) v3.5.1

NameMELO3C009751
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPolygalacturonase
Locationchr4 : 28467896 .. 28468204 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTGATATCAAATTTTGTGGCATTACTGCCATTGTTGTTATTGTTGGTGTCTAATTCTAAAGCTCAATCTACGGGTGGTGTTTTTGATGTCACAACATACGATGCTAAACCTAATGCTGATATAACTACGGTATGAGTACTTTAGGTGGATGAACGATTTTAATTGATACAAATTAAAACATTTTAGTTATCAAATGAAATGATTTAATAATTTAAACAGGCTTTGGCAAGTGCATGGAAGGAGGTATGTGCATCAACCACTCCAAGTAAAGTTTTTGGATTCCAAAAGGAAGATATGGATTAA

mRNA sequence

ATGGGATTGATATCAAATTTTGTGGCATTACTGCCATTGTTGTTATTGTTGGTGTCTAATTCTAAAGCTCAATCTACGGGTGGTGTTTTTGATGTCACAACATACGATGCTAAACCTAATGCTGATATAACTACGGCTTTGGCAAGTGCATGGAAGGAGGTATGTGCATCAACCACTCCAAGTAAAGTTTTTGGATTCCAAAAGGAAGATATGGATTAA

Coding sequence (CDS)

ATGGGATTGATATCAAATTTTGTGGCATTACTGCCATTGTTGTTATTGTTGGTGTCTAATTCTAAAGCTCAATCTACGGGTGGTGTTTTTGATGTCACAACATACGATGCTAAACCTAATGCTGATATAACTACGGCTTTGGCAAGTGCATGGAAGGAGGTATGTGCATCAACCACTCCAAGTAAAGTTTTTGGATTCCAAAAGGAAGATATGGATTAA

Protein sequence

MGLISNFVALLPLLLLLVSNSKAQSTGGVFDVTTYDAKPNADITTALASAWKEVCASTTPSKVFGFQKEDMD*
BLAST of MELO3C009751 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.4e-06
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1

Query: 14 LLLLVSNSKAQSTGGVFDVTTYDAKPNADITTALASAWKEVCASTTPSKV 64
          L+LL      +S  GVFD+T Y A  NADI+ AL +A+KE C ST+PS +
Sbjct: 11 LVLLFLAHFGESQTGVFDITKYGANSNADISEALLNAFKEACQSTSPSTI 60

BLAST of MELO3C009751 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.4e-06
Identity = 25/55 (45.45%), Postives = 32/55 (58.18%), Query Frame = 1

Query: 9  ALLPLLLLLVSNSKAQSTGGVFDVTTYDAKPNADITTALASAWKEVCASTTPSKV 64
          A++   L +     AQS  GV D++ +  KPN+DI  AL SAW E CASTT +K+
Sbjct: 6  AIIVSFLFIADFCAAQS--GVLDISKFGGKPNSDIGQALTSAWNEACASTTAAKI 58

BLAST of MELO3C009751 vs. TrEMBL
Match: E3VSV7_CUCPE (Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-17
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1

Query: 1  MGLISNFVALLPLLLLLVSNSKAQSTGGVFDVTTYDAKPNADITTALASAWKEVCASTTP 60
          MGL+S F+AL+PLLLLLVSN+   +T GVFD+TT+ AKPNAD T ALA AWKE CAS TP
Sbjct: 11 MGLLSKFMALIPLLLLLVSNATVGATSGVFDITTFGAKPNADATQALADAWKEACASATP 70

Query: 61 SKV 64
          SKV
Sbjct: 71 SKV 73

BLAST of MELO3C009751 vs. TrEMBL
Match: A0A151RS47_CAJCA (Polygalacturonase OS=Cajanus cajan GN=KK1_033140 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-08
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1

Query: 8  VALLPLLLLLVSNSKAQSTGGVFDVTTYDAKPNADITTALASAWKEVCASTTPSKV 64
          + +L LLLLL SN +AQ+  G+FD+  Y A PN DIT AL SAWK+ CAS TPSK+
Sbjct: 7  INILALLLLLASNVRAQT--GLFDIRKYGATPNGDITKALQSAWKDACASMTPSKI 60

BLAST of MELO3C009751 vs. TrEMBL
Match: A0A0A0KF15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434410 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-08
Identity = 38/62 (61.29%), Postives = 40/62 (64.52%), Query Frame = 1

Query: 1  MGLISNFVALLPLLLLLVSNSKAQ---------------STGGVFDVTTYDAKPNADITT 48
          MGLISN VA+LPLLLLLVSNSKAQ                 GGVFD+T Y AKPNADIT 
Sbjct: 1  MGLISNIVAILPLLLLLVSNSKAQPAAAQPSAQPAQPAGGAGGVFDITKYGAKPNADITA 60

BLAST of MELO3C009751 vs. TrEMBL
Match: Q9MBC0_SALGI (Polygalacturonase OS=Salix gilgiana GN=SgPG1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-08
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 1

Query: 1  MGL--ISNFVALLPLLLLLVSNSKAQSTGGVFDVTTYDAKPNADITTALASAWKEVCAST 60
          MGL  +S+ + L  LLLLL S +KAQS G VFDVT Y  K   DIT AL +AWK+ CAST
Sbjct: 1  MGLKVVSSAIVLFSLLLLLASTAKAQSNG-VFDVTKYGGKQ--DITAALTNAWKDACAST 60

Query: 61 TPSKV 64
           PSKV
Sbjct: 61 KPSKV 62

BLAST of MELO3C009751 vs. TrEMBL
Match: A0A0A0LX75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066500 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.3e-08
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 1

Query: 1  MGLISNFVALLPLLLLLVSNSKAQST--GGVFDVTTYDAKPNADIT 45
          MGL SNFV LLPL LLLVSN+K QS   GGVFDVT++ AKPN DIT
Sbjct: 1  MGLRSNFVTLLPLFLLLVSNAKGQSAAGGGVFDVTSFGAKPNGDIT 46

BLAST of MELO3C009751 vs. NCBI nr
Match: gi|659097567|ref|XP_008449696.1| (PREDICTED: LOW QUALITY PROTEIN: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 55/63 (87.30%), Postives = 57/63 (90.48%), Query Frame = 1

Query: 1  MGLISNFVALLPLLLLLVSNSKAQSTGGVFDVTTYDAKPNADITTALASAWKEVCASTTP 60
          MGLISNFVALLP+LLLLVSNSKAQS  GVFD+T Y AKPNADIT ALASAWKE CASTTP
Sbjct: 1  MGLISNFVALLPVLLLLVSNSKAQSAAGVFDITKYGAKPNADITAALASAWKEACASTTP 60

Query: 61 SKV 64
          SKV
Sbjct: 61 SKV 63

BLAST of MELO3C009751 vs. NCBI nr
Match: gi|659097569|ref|XP_008449697.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 6.7e-20
Identity = 54/63 (85.71%), Postives = 56/63 (88.89%), Query Frame = 1

Query: 1  MGLISNFVALLPLLLLLVSNSKAQSTGGVFDVTTYDAKPNADITTALASAWKEVCASTTP 60
          MGLISNFVALLP+L LLVSNSKAQS  GVFD+T Y AKPNADIT ALASAWKE CASTTP
Sbjct: 1  MGLISNFVALLPML-LLVSNSKAQSAAGVFDITKYGAKPNADITAALASAWKEACASTTP 60

Query: 61 SKV 64
          SKV
Sbjct: 61 SKV 62

BLAST of MELO3C009751 vs. NCBI nr
Match: gi|778717011|ref|XP_011657634.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 8.2e-18
Identity = 53/78 (67.95%), Postives = 55/78 (70.51%), Query Frame = 1

Query: 1  MGLISNFVALLPLLLLLVSNSKAQ---------------STGGVFDVTTYDAKPNADITT 60
          MGLISN VA+LPLLLLLVSNSKAQ                 GGVFD+T Y AKPNADIT 
Sbjct: 1  MGLISNIVAILPLLLLLVSNSKAQPAAAQPSAQPAQPAGGAGGVFDITKYGAKPNADITA 60

Query: 61 ALASAWKEVCASTTPSKV 64
          AL SAWKE CASTTPSKV
Sbjct: 61 ALTSAWKEACASTTPSKV 78

BLAST of MELO3C009751 vs. NCBI nr
Match: gi|659067859|ref|XP_008441641.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-17
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1

Query: 1  MGLISNFVALLPLLLLLVSNSKAQSTGGVFDVTTYDAKPNADITTALASAWKEVCASTTP 60
          MGL SNFVALL L LLLVSNSKAQS+G VFDVT++ AKP+ADIT AL SAWKE CAS TP
Sbjct: 1  MGLRSNFVALLLLFLLLVSNSKAQSSGAVFDVTSFGAKPDADITGALVSAWKEGCASITP 60

Query: 61 SKV 64
          SKV
Sbjct: 61 SKV 63

BLAST of MELO3C009751 vs. NCBI nr
Match: gi|310753534|gb|ADP09681.1| (polygalacturonase [Cucurbita pepo])

HSP 1 Score: 94.7 bits (234), Expect = 6.9e-17
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1

Query: 1  MGLISNFVALLPLLLLLVSNSKAQSTGGVFDVTTYDAKPNADITTALASAWKEVCASTTP 60
          MGL+S F+AL+PLLLLLVSN+   +T GVFD+TT+ AKPNAD T ALA AWKE CAS TP
Sbjct: 11 MGLLSKFMALIPLLLLLVSNATVGATSGVFDITTFGAKPNADATQALADAWKEACASATP 70

Query: 61 SKV 64
          SKV
Sbjct: 71 SKV 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PGLR_TOBAC9.4e-0650.00Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1[more]
PGLR_MEDSA9.4e-0645.45Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
Match NameE-valueIdentityDescription
E3VSV7_CUCPE4.8e-1771.43Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1[more]
A0A151RS47_CAJCA1.1e-0858.93Polygalacturonase OS=Cajanus cajan GN=KK1_033140 PE=3 SV=1[more]
A0A0A0KF15_CUCSA1.8e-0861.29Uncharacterized protein OS=Cucumis sativus GN=Csa_6G434410 PE=3 SV=1[more]
Q9MBC0_SALGI2.4e-0860.00Polygalacturonase OS=Salix gilgiana GN=SgPG1 PE=2 SV=1[more]
A0A0A0LX75_CUCSA5.3e-0873.91Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066500 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
gi|659097567|ref|XP_008449696.1|1.2e-2187.30PREDICTED: LOW QUALITY PROTEIN: exopolygalacturonase-like [Cucumis melo][more]
gi|659097569|ref|XP_008449697.1|6.7e-2085.71PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|778717011|ref|XP_011657634.1|8.2e-1867.95PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|659067859|ref|XP_008441641.1|3.1e-1779.37PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|310753534|gb|ADP09681.1|6.9e-1771.43polygalacturonase [Cucurbita pepo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009751T1MELO3C009751T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 13..60
score: 1.
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..63
score: 3.2
NoneNo IPR availablePANTHERPTHR31375:SF37PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..63
score: 3.2