MELO3C009749.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C009749.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPolygalacturonase
Locationchr04 : 29661701 .. 29662255 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAATGTAAATTGGCCAGTACTACAAACGGTGTTCGAATCAAAACATGGCCAGATTCTGTTGGCACGTTCCCAACCACTGACATGCATTTTGAAGATATAGAAATGGTTAATGTGAGTAATCCTATCATCATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGGTACATCTAAAATTAGGCCTCCTTAGTTTTGAACTTATTAATTAACTCAAAAGACATCAATAATATTATTGTTCGAGTTATGTATTTTTATTATGTTTTCTTTGTTTGTTCAGGTTCCATAAAAAATTAAGATCAACAAAGTAAGCTTCAAGGATATCACATACACTTCTGTAACTCCGACTGCAGTCAAACTTGTTTGCAGTGCAAGTAAATCCATGTGAGGGCCGAGTGGAAGTTGTTGATATTGGCCTCACTTATAGTGAAAGTGAAGGTCAAATTAAGTCGCAGTATGCAAATGTGAAACTCGCCATTTTAACAAAACAAAATCCCTCAATCTGTGATGAACCTGCACCAGCTGATAGTCCATCAACCGATTGA

mRNA sequence

ATGAAAAAATGTAAATTGGCCAGTACTACAAACGGTGTTCGAATCAAAACATGGCCAGATTCTGTTGGCACGTTCCCAACCACTGACATGCATTTTGAAGATATAGAAATGGTTAATGTGAGTAATCCTATCATCATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGTCAAACTTGTTTGCAGTGCAAGTAAATCCATGTGAGGGCCGAGTGGAAGTTGTTGATATTGGCCTCACTTATAGTGAAAGTGAAGGTCAAATTAAGTCGCAGTATGCAAATGTGAAACTCGCCATTTTAACAAAACAAAATCCCTCAATCTGTGATGAACCTGCACCAGCTGATAGTCCATCAACCGATTGA

Coding sequence (CDS)

ATGAAAAAATGTAAATTGGCCAGTACTACAAACGGTGTTCGAATCAAAACATGGCCAGATTCTGTTGGCACGTTCCCAACCACTGACATGCATTTTGAAGATATAGAAATGGTTAATGTGAGTAATCCTATCATCATAGACCAAGAATATTGTCCATGGAACCAATGCAACCGAAAGTCAAACTTGTTTGCAGTGCAAGTAAATCCATGTGAGGGCCGAGTGGAAGTTGTTGATATTGGCCTCACTTATAGTGAAAGTGAAGGTCAAATTAAGTCGCAGTATGCAAATGTGAAACTCGCCATTTTAACAAAACAAAATCCCTCAATCTGTGATGAACCTGCACCAGCTGATAGTCCATCAACCGATTGA

Protein sequence

MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKSNLFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYANVKLAILTKQNPSICDEPAPADSPSTD
Homology
[Close]
BLAST of MELO3C009749.2 vs. NCBI nr
Match: XP_011652893.1 (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 96/146 (65.75%), Postives = 98/146 (67.12%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK- 60
           +KKCKL STTNGVRIKTWPDSVGTFP TDMHFEDIEM NVSNPIIIDQEYCPWNQCNRK 
Sbjct: 262 VKKCKLTSTTNGVRIKTWPDSVGTFPATDMHFEDIEMDNVSNPIIIDQEYCPWNQCNRKV 321

Query: 61  -----------------------SNLFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYAN 120
                                    +   Q NPCE  VEV DI LTYS SEG IKSQ AN
Sbjct: 322 PSKIKISKVSFKNIRGTSATAVAVKIVCSQSNPCE-EVEVADIDLTYSGSEGPIKSQCAN 381

Query: 121 VKLAILTKQNPSICDEPAPADSPSTD 123
           VK  I  KQNP IC EPAP D PSTD
Sbjct: 382 VKPVITGKQNPPICGEPAPIDGPSTD 406

[Close]
BLAST of MELO3C009749.2 vs. NCBI nr
Match: XP_008441641.1 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 96/146 (65.75%), Postives = 102/146 (69.86%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK- 60
           +KKCKL STTNGVRIKTWPDSVGTFP +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRK 
Sbjct: 260 VKKCKLTSTTNGVRIKTWPDSVGTFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRKV 319

Query: 61  ------------------SNLFAVQV-----NPCEGRVEVVDIGLTYSESEGQIKSQYAN 120
                             +   AV++     NPCE  VEV DI LTYS SEG IKSQ AN
Sbjct: 320 PSKIKISKVSFKNIRGTSATPVAVKIVCSKSNPCE-EVEVADIDLTYSGSEGPIKSQCAN 379

Query: 121 VKLAILTKQNPSICDEPAPADSPSTD 123
           VK  I  KQNP IC EPAP D PSTD
Sbjct: 380 VKPVISGKQNPPICGEPAPLDGPSTD 404

[Close]
BLAST of MELO3C009749.2 vs. NCBI nr
Match: XP_016903689.1 (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40
Identity = 93/146 (63.70%), Postives = 98/146 (67.12%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK- 60
           +KKCKL  TTNGVRIKTWPDS   FP +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRK 
Sbjct: 215 VKKCKLTDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRKV 274

Query: 61  ------SN-----------------LFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYAN 120
                 SN                 +   Q NPCEG VEV DI LTYS SEG IKSQ AN
Sbjct: 275 PSKIKISNVSFKNIRGTSATPVAVKIVCSQSNPCEG-VEVADIDLTYSGSEGPIKSQCAN 334

Query: 121 VKLAILTKQNPSICDEPAPADSPSTD 123
           VK  I  KQNP IC EPAPA  PS+D
Sbjct: 335 VKPVISGKQNPPICGEPAPAGGPSSD 359

[Close]
BLAST of MELO3C009749.2 vs. NCBI nr
Match: XP_008449696.2 (PREDICTED: LOW QUALITY PROTEIN: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 5.0e-40
Identity = 91/146 (62.33%), Postives = 96/146 (65.75%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK- 60
           +KKCKL  TTNGVRIKTWPDS   FP +DMHFEDIEMVNVSNP++IDQEYCPWNQCNRK 
Sbjct: 271 VKKCKLTGTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVLIDQEYCPWNQCNRKV 330

Query: 61  -----------------------SNLFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYAN 120
                                    L   Q NPCEG VEV DI LTYS SEG IKSQ AN
Sbjct: 331 PSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEG-VEVADIDLTYSGSEGPIKSQCAN 390

Query: 121 VKLAILTKQNPSICDEPAPADSPSTD 123
           VK  I  KQNP IC EPAPA  PS+D
Sbjct: 391 VKPVISGKQNPPICAEPAPAGGPSSD 415

[Close]
BLAST of MELO3C009749.2 vs. NCBI nr
Match: XP_008449697.2 (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 5.0e-40
Identity = 91/146 (62.33%), Postives = 96/146 (65.75%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK- 60
           +KKCKL  TTNGVRIKTWPDS   FP +DMHFEDIEMVNVSNP++IDQEYCPWNQCNRK 
Sbjct: 282 VKKCKLTGTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVLIDQEYCPWNQCNRKV 341

Query: 61  -----------------------SNLFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYAN 120
                                    L   Q NPCEG VEV DI LTYS SEG IKSQ AN
Sbjct: 342 PSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEG-VEVADIDLTYSGSEGPIKSQCAN 401

Query: 121 VKLAILTKQNPSICDEPAPADSPSTD 123
           VK  I  KQNP IC EPAPA  PS+D
Sbjct: 402 VKPVISGKQNPPICAEPAPAGGPSSD 426

[Close]
BLAST of MELO3C009749.2 vs. TAIR10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 7.4e-22
Identity = 53/135 (39.26%), Postives = 74/135 (54.81%), Query Frame = 0 

Query: 4   CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK--SN 63
           C L  T NG+RIKTWP +  +   +D+HFEDI + +VSNPI+IDQEYCPWNQCN++  S 
Sbjct: 257 CTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKAST 316

Query: 64  LFAVQVN----------------------PCEGRVEVVDIGLTYSESEGQIKSQYANVKL 115
           +  V ++                      PC+  VE+ DI + Y+ ++G      +NV  
Sbjct: 317 IKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQ-NVEIGDIDIKYNGADGPATFHCSNVSP 376

[Close]
BLAST of MELO3C009749.2 vs. TAIR10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-21
Identity = 51/134 (38.06%), Postives = 70/134 (52.24%), Query Frame = 0 

Query: 4   CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKS--- 63
           C L  T NG+RIKTWP +  T   +D+HFE+I + NVSNPI+IDQEYCPWNQCN++    
Sbjct: 257 CTLQETDNGLRIKTWPSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQKPST 316

Query: 64  ---------------------NLFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYANVKL 114
                                 L   +  PC+  VEV D+ + Y+ ++G    Q +NV  
Sbjct: 317 IKLANISFKKIRGTSGNKDAVKLLCSKGYPCQ-NVEVGDVNIQYTGADGPATFQCSNVSP 376

[Close]
BLAST of MELO3C009749.2 vs. TAIR10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-20
Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 0 

Query: 4   CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKSN-- 63
           C L  T NG+RIKTWP +  +   +++HFE+I + NVSNPI+IDQEYCPWNQCN++ +  
Sbjct: 258 CTLQETDNGLRIKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSS 317

Query: 64  ----------------------LFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYANVKL 120
                                 L   +  PCE  V+V DI + Y+ ++G      +NV+ 
Sbjct: 318 IKLANISFRRIRGTSGNKDAVKLLCSKGYPCE-NVQVGDINIQYTGADGPATFMCSNVRP 377

[Close]
BLAST of MELO3C009749.2 vs. TAIR10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-19
Identity = 51/144 (35.42%), Postives = 70/144 (48.61%), Query Frame = 0 

Query: 4   CKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKS--- 63
           C L  T NG+RIKTWP +      + +HFE+I + NVSNPI+IDQEYCPWNQCN++    
Sbjct: 258 CTLQGTDNGLRIKTWPSAACATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQKPST 317

Query: 64  ---------------------NLFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYANVKL 123
                                 L   + +PC   VE+ +I L Y  ++G      +NV  
Sbjct: 318 IKLVDISFKNIRGTSGNKDAVKLLCSKAHPC-ANVEIGNINLEYKGADGPPTFMCSNVSP 377

[Close]
BLAST of MELO3C009749.2 vs. TAIR10
Match: AT4G18180.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-15
Identity = 51/145 (35.17%), Postives = 73/145 (50.34%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQC---- 60
           +K CK++ TTNG+RIKTW +S G    T+M FE+I M NV+NPIIIDQ YCP++ C    
Sbjct: 270 VKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTNPIIIDQSYCPFSSCISNV 329

Query: 61  ---------------NRKSNLFAVQVN-----PCEGRVEVVDIGLTYSESEG-------- 111
                             S+L AVQ++     PC+ +V + ++ L  S S+G        
Sbjct: 330 PSKVELSEIYFKNIRGTSSSLVAVQLHCSRGMPCK-KVYLENVHLDLSSSDGGRKQSSNR 389

[Close]
BLAST of MELO3C009749.2 vs. Swiss-Prot
Match: sp|Q05967|PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-20
Identity = 57/142 (40.14%), Postives = 76/142 (53.52%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNR-- 60
           ++ C   +T NGVRIKTWP S       D+HFEDI + NVSNP++IDQ YCP+N+CN+  
Sbjct: 257 VRNCTFTNTDNGVRIKTWPAS-HPGVVNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNKDL 316

Query: 61  ----------------------KSNLFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYAN 119
                                   +L   +  PCEG +EV DI +TYS  EG  KS   N
Sbjct: 317 PSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEG-IEVGDIDITYSGKEGPAKSSCEN 376

[Close]
BLAST of MELO3C009749.2 vs. Swiss-Prot
Match: sp|P35337|PGLR_BRANA (Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.7e-20
Identity = 52/137 (37.96%), Postives = 69/137 (50.36%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKS 60
           +K C L  T+NG+RIKTWP +  T     +HFEDI +  VSNPI+IDQEYCPWNQCN+  
Sbjct: 254 VKNCTLEGTSNGLRIKTWPSAACTTTAAGIHFEDIILNKVSNPILIDQEYCPWNQCNKNK 313

Query: 61  ------------------------NLFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYAN 114
                                    L   + +PCE  VE+ DI + Y+  +G    +  N
Sbjct: 314 PSTIKLVDITFRNIRGTSENKDAVKLLCSKGHPCE-NVEIGDINIEYTGPDGPPTFECTN 373

[Close]
BLAST of MELO3C009749.2 vs. Swiss-Prot
Match: sp|Q40312|PGLR_MEDSA (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.4e-19
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKS 60
           +K C L +T NGVRIKTWPD+ GT   +D+HFEDI M NV NP+IIDQEY PWNQC++K+
Sbjct: 263 VKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYYPWNQCSKKN 322

[Close]
BLAST of MELO3C009749.2 vs. Swiss-Prot
Match: sp|W8P8Q3|SALK6_KALTU (Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 PE=1 SV=3)

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-18
Identity = 56/143 (39.16%), Postives = 70/143 (48.95%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRKS 60
           +K C    T NGVRIK+W +S      +D+HFEDI + NV NP+IIDQEYCP+N C  K+
Sbjct: 263 VKNCSFTDTDNGVRIKSWMNSFEA-SASDLHFEDITVTNVLNPVIIDQEYCPYNHCKEKT 322

Query: 61  ------------------------NLFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYAN 120
                                    L      PC+G VE+ DI LT+    G   SQ  N
Sbjct: 323 PSKVKLSKISFKNVHGAAKSAEVVKLLCSSAVPCDG-VELADIDLTF--PGGAAVSQCKN 382

[Close]
BLAST of MELO3C009749.2 vs. Swiss-Prot
Match: sp|Q39766|PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.0e-17
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK- 60
           +  C + +T+NG RIKTWP   G    +++HFEDI M NVS+PI+IDQ+YCPWN+C +  
Sbjct: 265 ISNCTITNTSNGARIKTWPGEHGG-AVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNE 324

Query: 61  ------SNLFAVQV-----------------NPCEGRVEVVDIGLTYSESEGQIKSQYAN 120
                 SN+    +                 +PC+  VE+ DI + ++ +E    SQ  N
Sbjct: 325 ESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQ-NVELADIDIQHNGAE-PATSQCLN 384

Query: 121 VKLAILTKQNPSICDEPAPADSPST 122
           VK   + K NP  C  P P    +T
Sbjct: 385 VKPITIGKLNPIPCSGPVPKTPSAT 406

[Close]
BLAST of MELO3C009749.2 vs. TrEMBL
Match: tr|A0A1S3B3X5|A0A1S3B3X5_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 96/146 (65.75%), Postives = 102/146 (69.86%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK- 60
           +KKCKL STTNGVRIKTWPDSVGTFP +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRK 
Sbjct: 260 VKKCKLTSTTNGVRIKTWPDSVGTFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRKV 319

Query: 61  ------------------SNLFAVQV-----NPCEGRVEVVDIGLTYSESEGQIKSQYAN 120
                             +   AV++     NPCE  VEV DI LTYS SEG IKSQ AN
Sbjct: 320 PSKIKISKVSFKNIRGTSATPVAVKIVCSKSNPCE-EVEVADIDLTYSGSEGPIKSQCAN 379

Query: 121 VKLAILTKQNPSICDEPAPADSPSTD 123
           VK  I  KQNP IC EPAP D PSTD
Sbjct: 380 VKPVISGKQNPPICGEPAPLDGPSTD 404

[Close]
BLAST of MELO3C009749.2 vs. TrEMBL
Match: tr|A0A1S4E643|A0A1S4E643_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.9e-40
Identity = 93/146 (63.70%), Postives = 98/146 (67.12%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK- 60
           +KKCKL  TTNGVRIKTWPDS   FP +DMHFEDIEMVNVSNP+IIDQEYCPWNQCNRK 
Sbjct: 215 VKKCKLTDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRKV 274

Query: 61  ------SN-----------------LFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYAN 120
                 SN                 +   Q NPCEG VEV DI LTYS SEG IKSQ AN
Sbjct: 275 PSKIKISNVSFKNIRGTSATPVAVKIVCSQSNPCEG-VEVADIDLTYSGSEGPIKSQCAN 334

Query: 121 VKLAILTKQNPSICDEPAPADSPSTD 123
           VK  I  KQNP IC EPAPA  PS+D
Sbjct: 335 VKPVISGKQNPPICGEPAPAGGPSSD 359

[Close]
BLAST of MELO3C009749.2 vs. TrEMBL
Match: tr|A0A1S3BML3|A0A1S3BML3_CUCME (LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491497 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.3e-40
Identity = 91/146 (62.33%), Postives = 96/146 (65.75%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK- 60
           +KKCKL  TTNGVRIKTWPDS   FP +DMHFEDIEMVNVSNP++IDQEYCPWNQCNRK 
Sbjct: 271 VKKCKLTGTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVLIDQEYCPWNQCNRKV 330

Query: 61  -----------------------SNLFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYAN 120
                                    L   Q NPCEG VEV DI LTYS SEG IKSQ AN
Sbjct: 331 PSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEG-VEVADIDLTYSGSEGPIKSQCAN 390

Query: 121 VKLAILTKQNPSICDEPAPADSPSTD 123
           VK  I  KQNP IC EPAPA  PS+D
Sbjct: 391 VKPVISGKQNPPICAEPAPAGGPSSD 415

[Close]
BLAST of MELO3C009749.2 vs. TrEMBL
Match: tr|A0A1S3BMK3|A0A1S3BMK3_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491670 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.3e-40
Identity = 91/146 (62.33%), Postives = 96/146 (65.75%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK- 60
           +KKCKL  TTNGVRIKTWPDS   FP +DMHFEDIEMVNVSNP++IDQEYCPWNQCNRK 
Sbjct: 26  VKKCKLTGTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVLIDQEYCPWNQCNRKV 85

Query: 61  -----------------------SNLFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYAN 120
                                    L   Q NPCEG VEV DI LTYS SEG IKSQ AN
Sbjct: 86  PSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEG-VEVADIDLTYSGSEGPIKSQCAN 145

Query: 121 VKLAILTKQNPSICDEPAPADSPSTD 123
           VK  I  KQNP IC EPAPA  PS+D
Sbjct: 146 VKPVISGKQNPPICAEPAPAGGPSSD 170

[Close]
BLAST of MELO3C009749.2 vs. TrEMBL
Match: tr|A0A1S3BN96|A0A1S3BN96_CUCME (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491498 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.3e-40
Identity = 91/146 (62.33%), Postives = 96/146 (65.75%), Query Frame = 0 

Query: 1   MKKCKLASTTNGVRIKTWPDSVGTFPTTDMHFEDIEMVNVSNPIIIDQEYCPWNQCNRK- 60
           +KKCKL  TTNGVRIKTWPDS   FP +DMHFEDIEMVNVSNP++IDQEYCPWNQCNRK 
Sbjct: 282 VKKCKLTGTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVSNPVLIDQEYCPWNQCNRKV 341

Query: 61  -----------------------SNLFAVQVNPCEGRVEVVDIGLTYSESEGQIKSQYAN 120
                                    L   Q NPCEG VEV DI LTYS SEG IKSQ AN
Sbjct: 342 PSKIKISKVSFKNIRGTSATPVAVKLVCSQSNPCEG-VEVADIDLTYSGSEGPIKSQCAN 401

Query: 121 VKLAILTKQNPSICDEPAPADSPSTD 123
           VK  I  KQNP IC EPAPA  PS+D
Sbjct: 402 VKPVISGKQNPPICAEPAPAGGPSSD 426

The following BLAST results are available for this feature:
BLAST of MELO3C009749.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652893.11.4e-4265.75PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
XP_008441641.11.8e-4265.75PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
XP_016903689.12.9e-4063.70PREDICTED: exopolygalacturonase-like, partial [Cucumis melo][more]
XP_008449696.25.0e-4062.33PREDICTED: LOW QUALITY PROTEIN: exopolygalacturonase-like [Cucumis melo][more]
XP_008449697.25.0e-4062.33PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
BLAST of MELO3C009749.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07820.17.4e-2239.26Pectin lyase-like superfamily protein[more]
AT5G48140.12.2e-2138.06Pectin lyase-like superfamily protein[more]
AT3G07830.14.1e-2035.71Pectin lyase-like superfamily protein[more]
AT3G07840.12.6e-1935.42Pectin lyase-like superfamily protein[more]
AT4G18180.11.4e-1535.17Pectin lyase-like superfamily protein[more]
BLAST of MELO3C009749.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q05967|PGLR_TOBAC1.3e-2040.14Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1[more]
sp|P35337|PGLR_BRANA6.7e-2037.96Polygalacturonase OS=Brassica napus OX=3708 PE=2 SV=1[more]
sp|Q40312|PGLR_MEDSA7.4e-1965.00Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1[more]
sp|W8P8Q3|SALK6_KALTU1.3e-1839.16Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 P... [more]
sp|Q39766|PGLR_GOSBA9.0e-1735.86Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1[more]
BLAST of MELO3C009749.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B3X5|A0A1S3B3X5_CUCME1.2e-4265.75exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103485719 PE=3 SV=1[more]
tr|A0A1S4E643|A0A1S4E643_CUCME1.9e-4063.70exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103504477 PE=3 SV=1[more]
tr|A0A1S3BML3|A0A1S3BML3_CUCME3.3e-4062.33LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A1S3BMK3|A0A1S3BMK3_CUCME3.3e-4062.33exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491670 PE=3 SV=1[more]
tr|A0A1S3BN96|A0A1S3BN96_CUCME3.3e-4062.33exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491498 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0008152 metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009749.2.1MELO3C009749.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 2..63
e-value: 1.1E-17
score: 64.1
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 1..119
e-value: 6.4E-16
score: 60.2
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 2..61
NoneNo IPR availablePANTHERPTHR31375:SF37PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 2..61
IPR011050Pectin lyase fold/virulence factorSUPERFAMILYSSF51126Pectin lyase-likecoord: 3..111

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C009749.2Silver-seed gourdcarmedB0163
MELO3C009749.2Silver-seed gourdcarmedB0164
MELO3C009749.2Silver-seed gourdcarmedB0261
MELO3C009749.2Cucumber (Chinese Long) v3cucmedB211
MELO3C009749.2Watermelon (97103) v2medwmbB305
MELO3C009749.2Wax gourdmedwgoB377
MELO3C009749.2Wax gourdmedwgoB382
MELO3C009749.2Wax gourdmedwgoB425
MELO3C009749.2Cucurbita pepo (Zucchini)cpemedB679
MELO3C009749.2Cucumber (Gy14) v2cgybmedB185
MELO3C009749.2Cucumber (Gy14) v1cgymedB559
MELO3C009749.2Cucurbita maxima (Rimu)cmamedB260
MELO3C009749.2Cucurbita maxima (Rimu)cmamedB686
MELO3C009749.2Cucurbita maxima (Rimu)cmamedB852
MELO3C009749.2Cucurbita maxima (Rimu)cmamedB858
MELO3C009749.2Cucurbita moschata (Rifu)cmomedB244
MELO3C009749.2Cucurbita moschata (Rifu)cmomedB846
MELO3C009749.2Cucurbita moschata (Rifu)cmomedB852
MELO3C009749.2Cucurbita pepo (Zucchini)cpemedB074
MELO3C009749.2Cucurbita pepo (Zucchini)cpemedB943
MELO3C009749.2Cucurbita pepo (Zucchini)cpemedB938
MELO3C009749.2Wild cucumber (PI 183967)cpimedB208
MELO3C009749.2Cucumber (Chinese Long) v2cumedB207
MELO3C009749.2Bottle gourd (USVL1VR-Ls)lsimedB149
MELO3C009749.2Bottle gourd (USVL1VR-Ls)lsimedB273
MELO3C009749.2Watermelon (Charleston Gray)medwcgB309
MELO3C009749.2Watermelon (97103) v1medwmB344