MELO3C009635 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C009635
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Helicase/SANT-associated, DNA binding protein
Location	chr4 : 29459027 .. 29460168 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTAAAGGTCCCAGGTCTAAACTTGATCACGAGTCGAGAGCTAAGCGCCAAAAGGTATTATACCTCTCTGGGGAACAGAGAATTTGAGATTACTTATGGAAGCTGCTTGGTTTGCATGTTTTTCGTTCAATCCATCCATCGATCTATCTAACTACCTTTTTCACATGCTAACATGGATATTCATGCTTACACACATTGGGAGTTCTCCAAGAATCTTAAACAATTCTTGCGATTTTTTTGTCTACTCATGATGTCATGATGGTTATTTGGTATTTCAGGCACTTGAAGCTTCAAGAGAACCCAATCGACCTAAAACACATTGGGATCATGTTTTAGAAGAAATGGTTTGGCTATCAAAGGTGAATGACTAAGCCGACAATTTAAAATTGAGCTCCTTTTTGGTTTGAATGATTTAAATTACATGCATTTCACTCCATCACTTTCGAATTTTCTATATAAGGATGTCTGGTGATTCAAAGTTGGATCTTTTGGATTTCATTCATACAAGTAAATTGATTATTTGCAGGACTTTGAGTCTGAGCGGAAATGGAAATTAGCTCAGGCAAAAAGGGTTGCTCTAAGAGCTAGCAAAGGCATGGTAGATCAAGCAACAAGGGAAGAAAGGAAGTTGAAGGTTCAAAATAACCTCTAATTAGAAATATTCTTGTTGGTTTTCAAACAAAACAACAATGGCCTTGGGAATGAACCAAAAAATCTAGAAGTTGCTTGGATGTATCTCTTAATTTTATTTTTTAAAAGCCGTTTTCCAATATTTTGAAAACATTTTGTATTACTTTTGAAATTGGATAATTGTTTAAAATTATTTGTTATTTTTGTCCATTGTGACCGCCGACCAATATCCAGACAAGTTTTCTTTATTAAGAATTATCTGCTTTTTATTTCTAAACACAGAAAATTATGTTTGATCACTACTTTTAAACAGTCCCTGGTGTTAATGTTATTCATAGGATCATAATTATGAATGTACTGTTTTCCATTTTGCACAGGAGGAGGAGCAACGATTGAGAAAACTTGCTCTCAATATTTCAAAGGATGTAAAGAAGTTCTGGATGAAAATAGAAAAGCTGGCAAGTTCATTGACACAATACTATTTTGGTTTCTTTTGGATGAGATGA

mRNA sequence

ATGACATCTAAAGGTCCCAGGTCTAAACTTGATCACGAGTCGAGAGCTAAGCGCCAAAAGGCACTTGAAGCTTCAAGAGAACCCAATCGACCTAAAACACATTGGGATCATGTTTTAGAAGAAATGGTTTGGCTATCAAAGGACTTTGAGTCTGAGCGGAAATGGAAATTAGCTCAGGCAAAAAGGGTTGCTCTAAGAGCTAGCAAAGGCATGGTAGATCAAGCAACAAGGGAAGAAAGGAAGTTGAAGGAGGAGGAGCAACGATTGAGAAAACTTGCTCTCAATATTTCAAAGGATGTAAAGAAGTTCTGGATGAAAATAGAAAAGCTGGCAAGTTCATTGACACAATACTATTTTGGTTTCTTTTGGATGAGATGA

Coding sequence (CDS)

ATGACATCTAAAGGTCCCAGGTCTAAACTTGATCACGAGTCGAGAGCTAAGCGCCAAAAGGCACTTGAAGCTTCAAGAGAACCCAATCGACCTAAAACACATTGGGATCATGTTTTAGAAGAAATGGTTTGGCTATCAAAGGACTTTGAGTCTGAGCGGAAATGGAAATTAGCTCAGGCAAAAAGGGTTGCTCTAAGAGCTAGCAAAGGCATGGTAGATCAAGCAACAAGGGAAGAAAGGAAGTTGAAGGAGGAGGAGCAACGATTGAGAAAACTTGCTCTCAATATTTCAAAGGATGTAAAGAAGTTCTGGATGAAAATAGAAAAGCTGGCAAGTTCATTGACACAATACTATTTTGGTTTCTTTTGGATGAGATGA

Protein sequence

MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLASSLTQYYFGFFWMR*

Homology

[Close]

BLAST of MELO3C009635 vs. Swiss-Prot
Match: PIE1_ARATH (Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana GN=PIE1 PE=1 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.0e-48
Identity = 93/110 (84.55%), Postives = 100/110 (90.91%), Query Frame = 1


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SK  +SK D+ESRAKRQK LEA +EP RPKTHWDHVLEEM WLSKDFESERKWKLAQA
Sbjct: 14  MASKSGKSKPDNESRAKRQKTLEAPKEPRRPKTHWDHVLEEMAWLSKDFESERKWKLAQA 73

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           K+VALRASKGM+DQA+REERKLKEEEQRLRK+ALNISKD+KKFWMK+EKL
Sbjct: 74  KKVALRASKGMLDQASREERKLKEEEQRLRKVALNISKDMKKFWMKVEKL 123

[Close]

BLAST of MELO3C009635 vs. Swiss-Prot
Match: DOM_DROME (Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 7.5e-19
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 1


Query: 19  QKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKGMVDQATRE 78
           ++ L   +EP+RPK HWD++LEEMVWL+ DF  ERKWK   AK+ A    K   D+AT  
Sbjct: 504 ERRLPKLQEPSRPKAHWDYLLEEMVWLAADFAQERKWKKNAAKKCAKMVQKYFQDKATAA 563

Query: 79  ERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           +R  K +E +L+++A  I+++VK FW  +EKL
Sbjct: 564 QRAEKAQELQLKRVASFIAREVKSFWSNVEKL 595

[Close]

BLAST of MELO3C009635 vs. Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=3)

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-17
Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = 1


Query: 20  KALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKGMVDQATREE 79
           K L    EP RPK HWD++ EEM WLS DF  ER+WK   A++V     +   +Q  +EE
Sbjct: 122 KRLPKVPEPPRPKGHWDYLCEEMQWLSADFAQERRWKRGVARKVVRMVIRHHEEQRQKEE 181

Query: 80  RKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           R  +EE+ +LR++A  ++KDV++FW  +EK+
Sbjct: 182 RARREEQAKLRRIASTMAKDVRQFWSNVEKV 212

[Close]

BLAST of MELO3C009635 vs. Swiss-Prot
Match: EP400_MOUSE (E1A-binding protein p400 OS=Mus musculus GN=Ep400 PE=1 SV=3)

HSP 1 Score: 89.4 bits (220), Expect = 3.1e-17
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 1


Query: 20  KALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKGMVDQATREE 79
           + L   +E  RPK+HWD++LEEM W++ DF  ER+WKLA AK++    ++   ++  REE
Sbjct: 796 RRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKLAAAKKLVRTVARHHEEKKLREE 855

Query: 80  RKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           R  KEE+ RLR++A   +++++ FW  IE++
Sbjct: 856 RGKKEEQSRLRRIAATTAREIEYFWSNIEQV 886

[Close]

BLAST of MELO3C009635 vs. Swiss-Prot
Match: EP400_HUMAN (E1A-binding protein p400 OS=Homo sapiens GN=EP400 PE=1 SV=4)

HSP 1 Score: 89.0 bits (219), Expect = 4.1e-17
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 1


Query: 19  QKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKGMVDQATRE 78
           Q+ L   +E  RPK+HWD++LEEM W++ DF  ER+WK+A AK++     +   ++  RE
Sbjct: 796 QRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVVRHHEEKQLRE 855

Query: 79  ERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           ER  KEE+ RLR++A + +++++ FW  IE++
Sbjct: 856 ERGKKEEQSRLRRIAASTAREIECFWSNIEQV 887

[Close]

BLAST of MELO3C009635 vs. TrEMBL
Match: A0A0A0LBB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G808390 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 7.7e-55
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           MTSKGPRSKLDHESRAKRQKALEAS+EPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 107 MTSKGPRSKLDHESRAKRQKALEASKEPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 166

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL
Sbjct: 167 KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 216

[Close]

BLAST of MELO3C009635 vs. TrEMBL
Match: W9RRP2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018018 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.4e-51
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 1


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SKGPRSKLDHESRAKRQKALEA REP RPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MASKGPRSKLDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLASSLTQYY 119
           K+VAL+ASKGM+DQATR E+KLKEEEQRL+K+ALNISKDVKKFW+KIEKLASS    Y
Sbjct: 61  KKVALKASKGMLDQATRGEKKLKEEEQRLKKVALNISKDVKKFWLKIEKLASSSLVLY 118

[Close]

BLAST of MELO3C009635 vs. TrEMBL
Match: A0A0S3SUL5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G338600 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.4e-50
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = 1


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SKGPRSK+DHESRAKRQKALEA REP RPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           K+VALRASKGM+DQATR E+K+KEEEQRLRK+ALNISKDVKKFW KIEKL
Sbjct: 61  KKVALRASKGMIDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKL 110

[Close]

BLAST of MELO3C009635 vs. TrEMBL
Match: B9GF82_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s21500g PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.7e-50
Identity = 99/110 (90.00%), Postives = 106/110 (96.36%), Query Frame = 1


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SKGPRSKLDHE+RA+RQKALEA REP RPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MASKGPRSKLDHETRARRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           K+VALRASKGM+DQATR E+KLKEEEQRLRK+ALNISKDVKKFW+KIEKL
Sbjct: 61  KKVALRASKGMLDQATRGEKKLKEEEQRLRKVALNISKDVKKFWVKIEKL 110

[Close]

BLAST of MELO3C009635 vs. TrEMBL
Match: A0A059A342_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K018342 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.7e-50
Identity = 98/110 (89.09%), Postives = 106/110 (96.36%), Query Frame = 1


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SKGPRSKLDHE+RA+RQKALEA REP RPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MASKGPRSKLDHETRARRQKALEAPREPQRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           K+VA+RASKGM+DQATREE+K+KE EQRLRK+ALNISKDVKKFWMKIEKL
Sbjct: 61  KKVAIRASKGMLDQATREEKKMKEGEQRLRKVALNISKDVKKFWMKIEKL 110

[Close]

BLAST of MELO3C009635 vs. TAIR10
Match: AT3G12810.1 (AT3G12810.1 SNF2 domain-containing protein / helicase domain-containing protein)

HSP 1 Score: 193.0 bits (489), Expect = 1.1e-49
Identity = 93/110 (84.55%), Postives = 100/110 (90.91%), Query Frame = 1


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SK  +SK D+ESRAKRQK LEA +EP RPKTHWDHVLEEM WLSKDFESERKWKLAQA
Sbjct: 14  MASKSGKSKPDNESRAKRQKTLEAPKEPRRPKTHWDHVLEEMAWLSKDFESERKWKLAQA 73

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           K+VALRASKGM+DQA+REERKLKEEEQRLRK+ALNISKD+KKFWMK+EKL
Sbjct: 74  KKVALRASKGMLDQASREERKLKEEEQRLRKVALNISKDMKKFWMKVEKL 123

[Close]

BLAST of MELO3C009635 vs. TAIR10
Match: AT3G24880.1 (AT3G24880.1 Helicase/SANT-associated, DNA binding protein)

HSP 1 Score: 61.2 bits (147), Expect = 5.2e-10
Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 1


Query: 13  ESRAKRQKALEASREPN--RPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKG 72
           +++ KR   L     P   R K+ WD VLEEM WL+ DF  ER WK+  A ++  R +  
Sbjct: 552 QAKKKRIAELSCGTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAAAQICHRVA-- 611

Query: 73  MVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIE 109
           +  Q   EER    + ++L+K+A  +S  + +FW  +E
Sbjct: 612 LTCQLRFEER---NQHRKLKKIASVLSNAILQFWSSVE 644

[Close]

BLAST of MELO3C009635 vs. TAIR10
Match: AT3G24870.1 (AT3G24870.1 Helicase/SANT-associated, DNA binding protein)

HSP 1 Score: 60.5 bits (145), Expect = 8.8e-10
Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 1


Query: 13  ESRAKRQKALEASREPN--RPKTHWDHVLEEMVWLSKDFESERKWKLAQAKRVALRASKG 72
           +++ KR   L     P   R K+ WD VLEEM WL+ DF  ER WK+  A ++  R +  
Sbjct: 552 QAKKKRIAELSCGTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAATQICHRVA-- 611

Query: 73  MVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIE 109
           +  Q   EER    + ++L+K+A  +S  + +FW  +E
Sbjct: 612 LTCQLRFEER---NQHRKLKKIASVLSYAILQFWSSVE 644

[Close]

BLAST of MELO3C009635 vs. NCBI nr
Match: gi|659084771|ref|XP_008443065.1| (PREDICTED: LOW QUALITY PROTEIN: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 5.0e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL
Sbjct: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 110

[Close]

BLAST of MELO3C009635 vs. NCBI nr
Match: gi|778684791|ref|XP_011652096.1| (PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           MTSKGPRSKLDHESRAKRQKALEAS+EPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MTSKGPRSKLDHESRAKRQKALEASKEPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL
Sbjct: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 110

[Close]

BLAST of MELO3C009635 vs. NCBI nr
Match: gi|700204177|gb|KGN59310.1| (hypothetical protein Csa_3G808390 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           MTSKGPRSKLDHESRAKRQKALEAS+EPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 107 MTSKGPRSKLDHESRAKRQKALEASKEPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 166

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL
Sbjct: 167 KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 216

[Close]

BLAST of MELO3C009635 vs. NCBI nr
Match: gi|703122318|ref|XP_010102547.1| (hypothetical protein L484_018018 [Morus notabilis])

HSP 1 Score: 210.3 bits (534), Expect = 2.0e-51
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 1


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SKGPRSKLDHESRAKRQKALEA REP RPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MASKGPRSKLDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKLASSLTQYY 119
           K+VAL+ASKGM+DQATR E+KLKEEEQRL+K+ALNISKDVKKFW+KIEKLASS    Y
Sbjct: 61  KKVALKASKGMLDQATRGEKKLKEEEQRLKKVALNISKDVKKFWLKIEKLASSSLVLY 118

[Close]

BLAST of MELO3C009635 vs. NCBI nr
Match: gi|951024593|ref|XP_014513453.1| (PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X2 [Vigna radiata var. radiata])

HSP 1 Score: 205.7 bits (522), Expect = 4.8e-50
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = 1


Query: 1   MTSKGPRSKLDHESRAKRQKALEASREPNRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60
           M SKGPRSK+DHESRAKRQKALEA REP RPKTHWDHVLEEMVWLSKDFESERKWKLAQA
Sbjct: 1   MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA 60

Query: 61  KRVALRASKGMVDQATREERKLKEEEQRLRKLALNISKDVKKFWMKIEKL 111
           K+VALRASKGM+DQATR E+K+KEEEQRLRK+ALNISKDVKKFW KIEKL
Sbjct: 61  KKVALRASKGMIDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKL 110

The following BLAST results are available for this feature:

BLAST of MELO3C009635 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PIE1_ARATH	2.0e-48	84.55	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana GN=PIE...	[more]
DOM_DROME	7.5e-19	46.74	Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2	[more]
SRCAP_HUMAN	1.8e-17	43.96	Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=3	[more]
EP400_MOUSE	3.1e-17	41.76	E1A-binding protein p400 OS=Mus musculus GN=Ep400 PE=1 SV=3	[more]
EP400_HUMAN	4.1e-17	41.30	E1A-binding protein p400 OS=Homo sapiens GN=EP400 PE=1 SV=4	[more]

BLAST of MELO3C009635 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBB6_CUCSA	7.7e-55	99.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G808390 PE=4 SV=1	[more]
W9RRP2_9ROSA	1.4e-51	87.29	Uncharacterized protein OS=Morus notabilis GN=L484_018018 PE=4 SV=1	[more]
A0A0S3SUL5_PHAAN	3.4e-50	90.00	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G338600 PE=...	[more]
B9GF82_POPTR	5.7e-50	90.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s21500g PE=4 SV=1	[more]
A0A059A342_EUCGR	5.7e-50	89.09	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K018342 PE=4...	[more]

BLAST of MELO3C009635 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12810.1	1.1e-49	84.55	SNF2 domain-containing protein / helicase domain-containing protein	[more]
AT3G24880.1	5.2e-10	34.69	Helicase/SANT-associated, DNA binding protein	[more]
AT3G24870.1	8.8e-10	34.69	Helicase/SANT-associated, DNA binding protein	[more]

BLAST of MELO3C009635 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084771\|ref\|XP_008443065.1\|	5.0e-55	100.00	PREDICTED: LOW QUALITY PROTEIN: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING ...	[more]
gi\|778684791\|ref\|XP_011652096.1\|	1.1e-54	99.09	PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Cucumis sativus]	[more]
gi\|700204177\|gb\|KGN59310.1\|	1.1e-54	99.09	hypothetical protein Csa_3G808390 [Cucumis sativus]	[more]
gi\|703122318\|ref\|XP_010102547.1\|	2.0e-51	87.29	hypothetical protein L484_018018 [Morus notabilis]	[more]
gi\|951024593\|ref\|XP_014513453.1\|	4.8e-50	90.00	PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X2 [Vigna r...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014012	HSA_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0008152	metabolic process
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0033043	regulation of organelle organization
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0090558	plant epidermis development
biological_process	GO:0048827	phyllome development
biological_process	GO:0043933	macromolecular complex subunit organization
biological_process	GO:0048438	floral whorl development
biological_process	GO:0048449	floral organ formation
biological_process	GO:0048468	cell development
biological_process	GO:0009908	flower development
biological_process	GO:0048451	petal formation
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005618	cell wall
cellular_component	GO:0044464	cell part
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009635T1	MELO3C009635T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014012	Helicase/SANT-associated domain	PFAM	PF07529	HSA	coord: 27..93 score: 1.5
IPR014012	Helicase/SANT-associated domain	SMART	SM00573	bromneu2	coord: 23..94 score: 7.7
IPR014012	Helicase/SANT-associated domain	PROFILE	PS51204	HSA	coord: 22..94 score: 20
None	No IPR available	unknown	Coil	Coil	coord: 65..102 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C009635	ClCG10G017460	Watermelon (Charleston Gray)	mewcgB315
MELO3C009635	Cla97C10G200310	Watermelon (97103) v2	mewmbB316
MELO3C009635	Bhi11G002194	Wax gourd	mewgoB382
MELO3C009635	CSPI03G36550	Wild cucumber (PI 183967)	cpimeB214
MELO3C009635	Cucsa.242750	Cucumber (Gy14) v1	cgymeB412
MELO3C009635	CmaCh06G000940	Cucurbita maxima (Rimu)	cmameB752
MELO3C009635	CmoCh06G000870	Cucurbita moschata (Rifu)	cmomeB744
MELO3C009635	Cp4.1LG08g13810	Cucurbita pepo (Zucchini)	cpemeB797
MELO3C009635	CsGy3G034020	Cucumber (Gy14) v2	cgybmeB184
MELO3C009635	Carg01228	Silver-seed gourd	carmeB0163
MELO3C009635	CsaV3_3G038900	Cucumber (Chinese Long) v3	cucmeB218

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C009635	Melon (DHL92) v3.5.1	memeB085
MELO3C009635	Cucurbita maxima (Rimu)	cmameB229
MELO3C009635	Cucurbita moschata (Rifu)	cmomeB215
MELO3C009635	Cucumber (Chinese Long) v2	cumeB223
MELO3C009635	Cucumber (Chinese Long) v2	cumeB553
MELO3C009635	Watermelon (97103) v1	mewmB346
MELO3C009635	Cucurbita pepo (Zucchini)	cpemeB571
MELO3C009635	Bottle gourd (USVL1VR-Ls)	lsimeB260
MELO3C009635	Silver-seed gourd	carmeB0251