MELO3C009606 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C009606
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Descriptionconserved peptide upstream open reading frame 20
Locationchr4 : 29636016 .. 29638364 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGAACGCTGCCGCCTGAAGTAAATGCATAAGAAAAACTTCATCTTTCTCCGTTTCTCTCAACTAATAATTTCACACTCATAGCCTCTCTTCATCCATCTATCGATCTCTTCTCACTGAATCGCGAGCTTATCTGCGATTTCTTTCTTATGGGTGCTGCCTGATTCGGTAAATCACCTGTCTTTTTCCATCGTTTTCTTATTTTTAGAAAAATCGGGGTCAATTCTCCCATCAATTTCTAGGATACATCCCCTAGAAGTCGGAAATTTTGAGGAGTCAGATTATAGGTCACAATTTGAAATGTGGGTTGTTATCTCTTAGTGAAATTCTGCTTTGTTATACTGTGATATGAAGCTTTATTGATTATAAATGATTGCTTTCTATGTATATTGTACGTGAATTTTCGCAGTGCTATGGACCAGAAGGATAGAGCAACAGCTTCCTTGCTCAAGCGTGTTTTAGTTTCTTGTGCGTCTCAGGTATGTGAAGGGATTGAAAGTGAAACATGGATACCGGAAGACTGGAATGTATTCTTCTTTTAAGTGTAATTCTATAAATTCAGTGAGATATGGTCATTGGATTGTCTTTTTTTTTTTTTTTTTTTTGTTAGAATCATAACCTTGGTTGAGGATCGGGTTCTTGTTCCTTAGCCTATGCTTACCTAATTATGTTGATGAATTTGATTCCTACAAATAGAAGAGTAAAGCTAATTTTTACTGCAAAGAAATCAACAATGACACCCTCTCTTTGAAATTTCCGTTCATATTCCCAAAATTATATGCATTTCCTAAAATTTCCGTTTATTAGTTTGGTCTCTTTTGGATTGGAGTCTTTTCTTGAAGTTGAGGACTTCTTTTATGGTCGTGTTTTTTGTTTGCATTTGTTTCTCTCTTTTTTTCTCAATGAAAACTCTGGTTCTTGTAAAAGGGATTAGAAAAAAAAAAAAAAAAAGAGTTGAAGAGTTTCATTGTGGAATTTTTTTTCAAAATAGCATCAACACTTGTGAGTCTATGACTGGGTTCCGAGACAGAGTTCCAGCTAAAGCCCTTTCCCTAGTTGATATACCTTGTAAAAGCCATTAGTTGAAGTTCTTTAGGCACATTATTTTGTAGTTGCATGAATTTTTTATCAATAAGAAACTACACGTTCATTGAGAAACATGAAATAAATGAGAGAAAGAAGGCCATACTTAAAATAAAATAAATTAAACAGCTTGAGAAAGGGTGCTTCAATGACCAGCTATACTGAAAAAAATAGTTACAAATCTCTTTTACAGCTGAAGTTCAAAGAGACACTTCAAACCTCACTAGGATTTGGGATCAAAGCTCCTCACTAGATTTCTGTATCTCCTAAAGAACCTATTATTTAGCTCAATCCGAATGCATTTAAAGGATTTGTAAAGCAAGTAGCTCTACACAAGAACTGCACTTTATCTCTAAGGAACTTCATAAATGAAGGACGCAGAATTCCCTTGTTAGGGGCACTTTGTTTGGTTCCCTTGTTACAAGAGGACTTGTATTCTTGGCTCTTAAGTTGGTTTTATCAAAAAAGGTTAAAAAAATTGGGAAGTTGGTTTTAGTTTCCCCTCCTAAATATATCTGTTTCTTATATCAAAAAGTTACATTTCATGAACTTCACGTGTTGCTTAGTAGCTAACATACTGTATTGCAATCTGATGGTTCTCAACCAGTCAACCTTCATGCTTGCTGCTTCTATAAAGTCTTGTATTGTTTTGTTTGTTTTTTAACCCTCCATGTTCAGGGTAGCTTAAGGATAGCTTCACTGTCTCACCGATTTGTGAGACAATCTCTTAAATAGGTGGCTATCATTGTTCGAACCCACAACCTCTAAAGTACTTGGGTTTATAGTTTTGACTCTTTTGATTGCTTTGGCCAACCATTGTAGTTTGCTTCTAGAAAATATCAAGTTCCAATATCTGCAACATATGGTTGATACCATTTCGCGCCTTCGTGTTTATGGGACTGTTAAGAACTTTGAAAAAAATAATTTTTTATTGTTTGAATTGTGATTCAAATGATTTAGGAAAGTAAGAGAACATGGAACAGGGGCTGATACTTAATTTGTGTTATTTTCATGCATTATATGTACATATATACATCGTGGTTGGTTTTCCACAACCATTTATTATACATATGTGTGTGTATAGAGTATAATTTTAAAATCAATCAATCAATCAATTGTTTGTGTAGGCAAAACAATATGGGGGTTGTGTTGCGGCGAAGGTTCCAAAAGTTGAACGTGATATGTGTTTGAAAGAATTTATTGCACTAAAGTCTTGCATGCAAAATACGGTATCTATCAATAATTACAATTTATTTTTTAACTGA

mRNA sequence

AGAAGAACGCTGCCGCCTGAAGTAAATGCATAAGAAAAACTTCATCTTTCTCCGTTTCTCTCAACTAATAATTTCACACTCATAGCCTCTCTTCATCCATCTATCGATCTCTTCTCACTGAATCGCGAGCTTATCTGCGATTTCTTTCTTATGGGTGCTGCCTGATTCGGTAAATCACCTGTCTTTTTCCATCGTTTTCTTATTTTTAGAAAAATCGGGGTCAATTCTCCCATCAATTTCTAGGATACATCCCCTAGAAGTCGGAAATTTTGAGGAGTCAGATTATAGGTCACAATTTGAAATGTGGGTTGTTATCTCTTAGTGAAATTCTGCTTTGTTATACTGTGATATGAAGCTTTATTGATTATAAATGATTGCTTTCTATGTATATTGTACGTGAATTTTCGCAGTGCTATGGACCAGAAGGATAGAGCAACAGCTTCCTTGCTCAAGCGTGTTTTAGTTTCTTGTGCGTCTCAGGCAAAACAATATGGGGGTTGTGTTGCGGCGAAGGTTCCAAAAGTTGAACGTGATATGTGTTTGAAAGAATTTATTGCACTAAAGTCTTGCATGCAAAATACGGTATCTATCAATAATTACAATTTATTTTTTAACTGA

Coding sequence (CDS)

ATGGACCAGAAGGATAGAGCAACAGCTTCCTTGCTCAAGCGTGTTTTAGTTTCTTGTGCGTCTCAGGCAAAACAATATGGGGGTTGTGTTGCGGCGAAGGTTCCAAAAGTTGAACGTGATATGTGTTTGAAAGAATTTATTGCACTAAAGTCTTGCATGCAAAATACGGTATCTATCAATAATTACAATTTATTTTTTAACTGA

Protein sequence

MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTVSINNYNLFFN*
Homology
[Close]
BLAST of MELO3C009606 vs. TrEMBL
Match: A0A0A0LB85_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G799640 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-22
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 58
          MD+KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNT+
Sbjct: 34 MDRKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTL 90

[Close]
BLAST of MELO3C009606 vs. TrEMBL
Match: M5W8A2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001568mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-16
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1 

Query: 4  KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTVSI 60
          K+R + S LKR+LV+CA+QAK+YGGCVAAKVP+VERDMCLKEF+ALKSCMQN  SI
Sbjct: 2  KERNSTSTLKRILVTCAAQAKEYGGCVAAKVPQVERDMCLKEFLALKSCMQNVSSI 57

[Close]
BLAST of MELO3C009606 vs. TrEMBL
Match: B9IIB7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06050g PE=4 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-16
Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = 1 

Query: 4  KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTVSIN 61
          K+R T S L+RVLV+CA+QAK+YGGCVAAKVP++ERDMCLKEF+ALK+CMQNT   N
Sbjct: 2  KERNTTSTLRRVLVNCAAQAKEYGGCVAAKVPEIERDMCLKEFLALKNCMQNTCKHN 58

[Close]
BLAST of MELO3C009606 vs. TrEMBL
Match: A0A0B0N4A6_GOSAR (Putative C18orf8 OS=Gossypium arboreum GN=F383_33072 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-15
Identity = 38/64 (59.38%), Postives = 54/64 (84.38%), Query Frame = 1 

Query: 4  KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTVSINNYN 63
          K++ T S L+R+LV+C +Q  +YG CVAAKVP+VERDMCLKEF+ALK+CMQNT+++ N+ 
Sbjct: 2  KEKKTISPLRRILVNCTAQVNEYGACVAAKVPEVERDMCLKEFLALKTCMQNTINVFNFL 61

Query: 64 LFFN 68
          L ++
Sbjct: 62 LIYS 65

[Close]
BLAST of MELO3C009606 vs. TrEMBL
Match: A0A059A366_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K01857 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-15
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 4  KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 58
          K+R T SLL R+LV+C+SQAK YG CVAAKVP+VERDMCLKEF+ALKSCMQ TV
Sbjct: 32 KERNTTSLLNRILVNCSSQAKLYGSCVAAKVPEVERDMCLKEFLALKSCMQRTV 85

[Close]
BLAST of MELO3C009606 vs. TAIR10
Match: AT3G12012.1 (AT3G12012.1 conserved peptide upstream open reading frame 20)

HSP 1 Score: 80.9 bits (198), Expect = 3.4e-16
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1 

Query: 1  MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 58
          M +K+  TAS L R+L +C+ QAK YG CVA+KV +VERD+CLKEF+ALKSCMQ+T+
Sbjct: 1  MKEKNSTTASTLGRILATCSKQAKDYGSCVASKVHEVERDICLKEFLALKSCMQHTI 57

[Close]
BLAST of MELO3C009606 vs. NCBI nr
Match: gi|700204147|gb|KGN59280.1| (hypothetical protein Csa_3G799640 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-22
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MDQKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 58
          MD+KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNT+
Sbjct: 34 MDRKDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTL 90

[Close]
BLAST of MELO3C009606 vs. NCBI nr
Match: gi|595817911|ref|XP_007204279.1| (hypothetical protein PRUPE_ppa001568mg [Prunus persica])

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-16
Identity = 43/56 (76.79%), Postives = 51/56 (91.07%), Query Frame = 1 

Query: 4  KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTVSI 60
          K+R + S LKR+LV+CA+QAK+YGGCVAAKVP+VERDMCLKEF+ALKSCMQN  SI
Sbjct: 2  KERNSTSTLKRILVTCAAQAKEYGGCVAAKVPQVERDMCLKEFLALKSCMQNVSSI 57

[Close]
BLAST of MELO3C009606 vs. NCBI nr
Match: gi|566208960|ref|XP_002323334.2| (hypothetical protein POPTR_0016s06050g [Populus trichocarpa])

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-16
Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = 1 

Query: 4  KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTVSIN 61
          K+R T S L+RVLV+CA+QAK+YGGCVAAKVP++ERDMCLKEF+ALK+CMQNT   N
Sbjct: 2  KERNTTSTLRRVLVNCAAQAKEYGGCVAAKVPEIERDMCLKEFLALKNCMQNTCKHN 58

[Close]
BLAST of MELO3C009606 vs. NCBI nr
Match: gi|629081676|gb|KCW48121.1| (hypothetical protein EUGRSUZ_K01857, partial [Eucalyptus grandis])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-15
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 4  KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTV 58
          K+R T SLL R+LV+C+SQAK YG CVAAKVP+VERDMCLKEF+ALKSCMQ TV
Sbjct: 32 KERNTTSLLNRILVNCSSQAKLYGSCVAAKVPEVERDMCLKEFLALKSCMQRTV 85

[Close]
BLAST of MELO3C009606 vs. NCBI nr
Match: gi|728826348|gb|KHG06679.1| (putative C18orf8 [Gossypium arboreum])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-15
Identity = 38/64 (59.38%), Postives = 54/64 (84.38%), Query Frame = 1 

Query: 4  KDRATASLLKRVLVSCASQAKQYGGCVAAKVPKVERDMCLKEFIALKSCMQNTVSINNYN 63
          K++ T S L+R+LV+C +Q  +YG CVAAKVP+VERDMCLKEF+ALK+CMQNT+++ N+ 
Sbjct: 2  KEKKTISPLRRILVNCTAQVNEYGACVAAKVPEVERDMCLKEFLALKTCMQNTINVFNFL 61

Query: 64 LFFN 68
          L ++
Sbjct: 62 LIYS 65

The following BLAST results are available for this feature:
BLAST of MELO3C009606 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LB85_CUCSA1.2e-2296.49Uncharacterized protein OS=Cucumis sativus GN=Csa_3G799640 PE=4 SV=1[more]
M5W8A2_PRUPE1.0e-1676.79Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001568mg PE=4 SV=1[more]
B9IIB7_POPTR1.3e-1673.68Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06050g PE=4 SV=2[more]
A0A0B0N4A6_GOSAR1.1e-1559.38Putative C18orf8 OS=Gossypium arboreum GN=F383_33072 PE=4 SV=1[more]
A0A059A366_EUCGR1.1e-1577.78Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_K01857 PE=4 ... [more]
BLAST of MELO3C009606 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G12012.13.4e-1663.16 conserved peptide upstream open reading frame 20[more]
BLAST of MELO3C009606 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204147|gb|KGN59280.1|1.8e-2296.49hypothetical protein Csa_3G799640 [Cucumis sativus][more]
gi|595817911|ref|XP_007204279.1|1.4e-1676.79hypothetical protein PRUPE_ppa001568mg [Prunus persica][more]
gi|566208960|ref|XP_002323334.2|1.9e-1673.68hypothetical protein POPTR_0016s06050g [Populus trichocarpa][more]
gi|629081676|gb|KCW48121.1|1.6e-1577.78hypothetical protein EUGRSUZ_K01857, partial [Eucalyptus grandis][more]
gi|728826348|gb|KHG06679.1|1.6e-1559.38putative C18orf8 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU44586melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009606T1MELO3C009606T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU44586MU44586transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34561FAMILY NOT NAMEDcoord: 1..64
score: 4.5
NoneNo IPR availablePANTHERPTHR34561:SF1SUBFAMILY NOT NAMEDcoord: 1..64
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C009606Csa3G799640Cucumber (Chinese Long) v2cumeB223
MELO3C009606Cla97C10G200600Watermelon (97103) v2mewmbB316
MELO3C009606Bhi11G002095Wax gourdmewgoB381
MELO3C009606CSPI03G36260Wild cucumber (PI 183967)cpimeB214
MELO3C009606Cucsa.242500Cucumber (Gy14) v1cgymeB412
MELO3C009606CsaV3_3G038610Cucumber (Chinese Long) v3cucmeB218
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C009606Watermelon (Charleston Gray)mewcgB315
MELO3C009606Watermelon (97103) v1mewmB346
MELO3C009606Cucurbita pepo (Zucchini)cpemeB571
MELO3C009606Cucurbita pepo (Zucchini)cpemeB801
MELO3C009606Bottle gourd (USVL1VR-Ls)lsimeB260
MELO3C009606Cucumber (Gy14) v2cgybmeB184
MELO3C009606Silver-seed gourdcarmeB0163
MELO3C009606Silver-seed gourdcarmeB0251
MELO3C009606Cucurbita maxima (Rimu)cmameB229
MELO3C009606Cucurbita maxima (Rimu)cmameB752
MELO3C009606Cucurbita moschata (Rifu)cmomeB215
MELO3C009606Cucurbita moschata (Rifu)cmomeB744