MELO3C009106.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C009106.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description50S ribosomal protein L35
Locationchr04 : 34171493 .. 34172302 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGTTCATGCCAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGGTCCTCGTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAAGCATTTGGGGCGTTGCCGATCTAAAATCCCACATTCTGAATCTAAATATCAATCTTGGCATGTTGGCCATCAGGTACGGAATCAATCATGGGACGAGGAGTTTTCATTCAATTTATAGGTTTTTTTATTTATTTTTGTGTGTAAAAAAAAATTATTGATGATTGTAGATTGGTGTGGGATTTGGTTATCTGGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCGGTTGGTTCCAGCTTCAGCTCCATTATATGGGTTTACCTGTGTGTATTTGTTATATGGCTCCAGAAATGTAAGTACCTTTGGGCAGTGCTATTGCTAGTTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTTACGCCACTTTTTCTAAAATATTTCTTTTTCTTCCTTATTCTATTTTTCTCTTTTATCCAAATTCATCTCCCTATTTTTTTTAATTTATTATATTATCTAAACCAACCATTTACATGAAAACTATTTTCGAAACAAATTATTTATAGTTTTTTTTTTTTTTTTTAACGTTTTCCAACAAATTCTTGCATTGAAGGTGATCCAATCTCG

mRNA sequence

ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGTTCATGCCAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGGTCCTCGTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAAGCATTTGGGGCGTTGCCGATCTAAAATCCCACATTCTGAATCTAAATATCAATCTTGGCATGTTGGCCATCAGATTGGTGTGGGATTTGGTTATCTGGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCGGTTGGTTCCAGCTTCAGCTCCATTATATGGGTTTACCTGTGTGTATTTGTTATATGGCTCCAGAAATGTAAGTACCTTTGGGCAGTGCTATTGCTAGTTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTTACGCCACTTTTTCTAAAATATTTCTTTTTCTTCCTTATTCTATTTTTCTCTTTTATCCAAATTCATCTCCCTATTTTTTTTAATTTATTATATTATCTAAACCAACCATTTACATGAAAACTATTTTCGAAACAAATTATTTATAGTTTTTTTTTTTTTTTTTAACGTTTTCCAACAAATTCTTGCATTGAAGGTGATCCAATCTCG

Coding sequence (CDS)

ATGGCGATAGGTCATCGGCGGTCATTCAAAATCAGCGTTCATGCCAAGATCTGTAACCTTTATATCAAGCTGAAGGCCACTCTGAAACTTCCTTCCGGGAAATTCCAACGCCTCCTAAAGCTTGATAAACTACTCATCGAAGTGGATTCCAAATCCGAATCTCGGGTCCTCGTTCAACGGCGACGGACTTTGAAATCTCGAATGCTCAGCTTCGTCAAGAAGCATTTGGGGCGTTGCCGATCTAAAATCCCACATTCTGAATCTAAATATCAATCTTGGCATGTTGGCCATCAGATTGGTGTGGGATTTGGTTATCTGGTTGCACTCAAGACACAAATTGGGCTTGCAAATGCGGTTGGTTCCAGCTTCAGCTCCATTATATGGGTTTACCTGTGTGTATTTGTTATATGGCTCCAGAAATGTAAGTACCTTTGGGCAGTGCTATTGCTAGTTCCTCTGTTTCCTCTCTTACTCTTCCAATTGGATACATTTGTACATCTTTTACATTTACGCCACTTTTTCTAA

Protein sequence

MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQRRRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF
Homology
[Close]
BLAST of MELO3C009106.2 vs. NCBI nr
Match: XP_008442323.1 (PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo])

HSP 1 Score: 334.7 bits (857), Expect = 1.8e-88
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR
Sbjct: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60

Query: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVG 120
           RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVG
Sbjct: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVG 120

Query: 121 SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF 175
           SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF
Sbjct: 121 SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF 174

[Close]
BLAST of MELO3C009106.2 vs. NCBI nr
Match: XP_004137677.1 (PREDICTED: uncharacterized protein LOC101222866 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 4.1e-72
Identity = 151/181 (83.43%), Postives = 161/181 (88.95%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MAIGHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SR+L+QR
Sbjct: 3   MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 62

Query: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVG-------HQIGVGFGY-LVALKTQ 120
           RRTLKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG          GVG GY +VALKTQ
Sbjct: 63  RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 122

Query: 121 IGLANAVGSSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRH 174
           I LANA+G SFSSIIWVYLCVFV+WLQKCKYLWA+LLL+PLFPLLLFQLDTFVHLLHLR 
Sbjct: 123 IELANAIGPSFSSIIWVYLCVFVLWLQKCKYLWAMLLLIPLFPLLLFQLDTFVHLLHLRQ 182

[Close]
BLAST of MELO3C009106.2 vs. NCBI nr
Match: KGN58694.1 (50S ribosomal protein L35 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 5.2e-51
Identity = 114/140 (81.43%), Postives = 121/140 (86.43%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MAIGHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SR+L+QR
Sbjct: 1   MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 60

Query: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVG-------HQIGVGFGY-LVALKTQ 120
           RRTLKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG          GVG GY +VALKTQ
Sbjct: 61  RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 120

Query: 121 IGLANAVGSSFSSIIWVYLC 133
           I LANA+G SFSSIIWVYLC
Sbjct: 121 IELANAIGPSFSSIIWVYLC 140

[Close]
BLAST of MELO3C009106.2 vs. NCBI nr
Match: XP_023540743.1 (uncharacterized protein LOC111801019 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.1 bits (370), Expect = 5.4e-32
Identity = 96/193 (49.74%), Postives = 126/193 (65.28%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MA+GHRRS+KI+VHAK+ +LYIK KAT+K PSGKF+ LL LDKLL+ +DSKSESR+LVQ+
Sbjct: 1   MALGHRRSWKITVHAKVNDLYIKFKATVKRPSGKFRSLLNLDKLLVGLDSKSESRILVQQ 60

Query: 61  RRTLKSRMLSFVKKHLGRCRSKI--------PH--SESKYQSWHVGHQ-------IGVGF 120
            RTLKSR++SFVKKH  R RSK         P+   E++YQSW +G          GVG 
Sbjct: 61  HRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETEYQSWRLGRAESSCAAVFGVGL 120

Query: 121 GYLVALKTQIGLANAVG--SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQL 175
           GYL+A          VG   S SS + V + +FV+   K K+LWA+L+ V    LLL ++
Sbjct: 121 GYLLAEFGASAAVKRVGIIPSLSSFLLVCVVLFVLLFHKSKFLWAMLMAV--LSLLLLEI 180

[Close]
BLAST of MELO3C009106.2 vs. NCBI nr
Match: OMP11497.1 (hypothetical protein CCACVL1_00483, partial [Corchorus capsularis])

HSP 1 Score: 53.5 bits (127), Expect = 8.2e-04
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 0 

Query: 1  MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQR---LLKLDKLLIEVDSKSESRVL 60
          M +G +R +K S+ AK      KLKAT  LP+ KF R   LL+L+K +I +  KS S + 
Sbjct: 1  MQVGKQRPWKWSIQAKAEKFNFKLKATNILPTWKFDRFSLLLRLNKFIINLQLKSGSTIS 60

Query: 61 V--QRRRTLKSRMLSFVKK 75
          V  Q++RTLKSR L F++K
Sbjct: 61 VSAQQKRTLKSRFLGFLEK 79

[Close]
BLAST of MELO3C009106.2 vs. TrEMBL
Match: tr|A0A1S3B4Y8|A0A1S3B4Y8_CUCME (uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.2e-88
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR
Sbjct: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60

Query: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVG 120
           RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVG
Sbjct: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVGHQIGVGFGYLVALKTQIGLANAVG 120

Query: 121 SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF 175
           SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF
Sbjct: 121 SSFSSIIWVYLCVFVIWLQKCKYLWAVLLLVPLFPLLLFQLDTFVHLLHLRHFF 174

[Close]
BLAST of MELO3C009106.2 vs. TrEMBL
Match: tr|A0A0A0LCL9|A0A0A0LCL9_CUCSA (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.5e-51
Identity = 114/140 (81.43%), Postives = 121/140 (86.43%), Query Frame = 0 

Query: 1   MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSESRVLVQR 60
           MAIGHRRSFKISV AKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKS SR+L+QR
Sbjct: 1   MAIGHRRSFKISVQAKICNLYIKLKATLKLPSGKFQRLLKLDKLLIEVDSKSVSRILLQR 60

Query: 61  RRTLKSRMLSFVKKHLGRCRSKIPHSESKYQSWHVG-------HQIGVGFGY-LVALKTQ 120
           RRTLKSRMLSFVKKHLG  RSK PH+ES+Y+SWHVG          GVG GY +VALKTQ
Sbjct: 61  RRTLKSRMLSFVKKHLGHRRSKFPHAESRYRSWHVGLLERRCVAAFGVGLGYVVVALKTQ 120

Query: 121 IGLANAVGSSFSSIIWVYLC 133
           I LANA+G SFSSIIWVYLC
Sbjct: 121 IELANAIGPSFSSIIWVYLC 140

[Close]
BLAST of MELO3C009106.2 vs. TrEMBL
Match: tr|A0A1R3KWS9|A0A1R3KWS9_COCAP (Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_00483 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.4e-04
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 0 

Query: 1  MAIGHRRSFKISVHAKICNLYIKLKATLKLPSGKFQR---LLKLDKLLIEVDSKSESRVL 60
          M +G +R +K S+ AK      KLKAT  LP+ KF R   LL+L+K +I +  KS S + 
Sbjct: 1  MQVGKQRPWKWSIQAKAEKFNFKLKATNILPTWKFDRFSLLLRLNKFIINLQLKSGSTIS 60

Query: 61 V--QRRRTLKSRMLSFVKK 75
          V  Q++RTLKSR L F++K
Sbjct: 61 VSAQQKRTLKSRFLGFLEK 79

The following BLAST results are available for this feature:
BLAST of MELO3C009106.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442323.11.8e-88100.00PREDICTED: uncharacterized protein LOC103486229 [Cucumis melo][more]
XP_004137677.14.1e-7283.43PREDICTED: uncharacterized protein LOC101222866 [Cucumis sativus][more]
KGN58694.15.2e-5181.4350S ribosomal protein L35 [Cucumis sativus][more]
XP_023540743.15.4e-3249.74uncharacterized protein LOC111801019 [Cucurbita pepo subsp. pepo][more]
OMP11497.18.2e-0445.57hypothetical protein CCACVL1_00483, partial [Corchorus capsularis][more]
BLAST of MELO3C009106.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C009106.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C009106.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4Y8|A0A1S3B4Y8_CUCME1.2e-88100.00uncharacterized protein LOC103486229 OS=Cucumis melo OX=3656 GN=LOC103486229 PE=... [more]
tr|A0A0A0LCL9|A0A0A0LCL9_CUCSA3.5e-5181.4350S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_3G728110 PE=4 SV=1[more]
tr|A0A1R3KWS9|A0A1R3KWS9_COCAP5.4e-0445.57Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009106.2.1MELO3C009106.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C009106.2Csa3G728110Cucumber (Chinese Long) v2cumedB209
MELO3C009106.2CSPI03G30660Wild cucumber (PI 183967)cpimedB210
MELO3C009106.2Cucsa.176990Cucumber (Gy14) v1cgymedB310
MELO3C009106.2CmaCh06G001930Cucurbita maxima (Rimu)cmamedB855
MELO3C009106.2CmoCh06G001830Cucurbita moschata (Rifu)cmomedB849
MELO3C009106.2Lsi03G022770Bottle gourd (USVL1VR-Ls)lsimedB273
MELO3C009106.2Cp4.1LG08g12470Cucurbita pepo (Zucchini)cpemedB937
MELO3C009106.2CsGy3G028490Cucumber (Gy14) v2cgybmedB185
MELO3C009106.2Cla018047Watermelon (97103) v1medwmB344
MELO3C009106.2ClCG10G022700Watermelon (Charleston Gray)medwcgB309
MELO3C009106.2Cla97C10G206110Watermelon (97103) v2medwmbB305
MELO3C009106.2Bhi11G001452Wax gourdmedwgoB381
MELO3C009106.2Carg01140Silver-seed gourdcarmedB0162
MELO3C009106.2CsaV3_3G033130Cucumber (Chinese Long) v3cucmedB211
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C009106.2Cucumber (Chinese Long) v3cucmedB284
MELO3C009106.2Watermelon (97103) v2medwmbB318
MELO3C009106.2Wax gourdmedwgoB422
MELO3C009106.2Cucurbita pepo (Zucchini)cpemedB678
MELO3C009106.2Cucumber (Gy14) v2cgybmedB246
MELO3C009106.2Cucumber (Gy14) v1cgymedB206
MELO3C009106.2Cucurbita maxima (Rimu)cmamedB260
MELO3C009106.2Cucurbita maxima (Rimu)cmamedB687
MELO3C009106.2Cucurbita maxima (Rimu)cmamedB893
MELO3C009106.2Cucurbita moschata (Rifu)cmomedB244
MELO3C009106.2Cucurbita moschata (Rifu)cmomedB470
MELO3C009106.2Cucurbita moschata (Rifu)cmomedB678
MELO3C009106.2Cucurbita pepo (Zucchini)cpemedB070
MELO3C009106.2Cucurbita pepo (Zucchini)cpemedB524
MELO3C009106.2Wild cucumber (PI 183967)cpimedB282
MELO3C009106.2Cucumber (Chinese Long) v2cumedB278
MELO3C009106.2Melon (DHL92) v3.6.1medmedB143
MELO3C009106.2Bottle gourd (USVL1VR-Ls)lsimedB147
MELO3C009106.2Watermelon (Charleston Gray)medwcgB324
MELO3C009106.2Watermelon (97103) v1medwmB374
MELO3C009106.2Silver-seed gourdcarmedB0294
MELO3C009106.2Silver-seed gourdcarmedB0983