MELO3C009081 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C009081
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transporter-related family protein
Location	chr8 : 17687716 .. 17687964 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTTTGGGAATTTTCGAATTCTTGTGCTTGCTTATGCTGGAATGGAATGGGTGTTGGAATCTATGGAATTGATGTTGATCTCCTTTGTTGGACTTGGAGTCCAGTCTGCGTGGAACCTTTCTCCCCATGAAGAGTCTTTGATCACCCGTGTGGTTTTTGCAAGTATGTTAGTTGGGGCCTATACATGGGGCATAGTCTCCGATAAATATGGACCGTCCCCGTTGAAGGATCGGAGGAGTCACTGA

mRNA sequence

ATGCGTTTTGGGAATTTTCGAATTCTTGTGCTTGCTTATGCTGGAATGGAATGGGTGTTGGAATCTATGGAATTGATGTTGATCTCCTTTGTTGGACTTGGAGTCCAGTCTGCGTGGAACCTTTCTCCCCATGAAGAGTCTTTGATCACCCGTGTGGTTTTTGCAAGTATGTTAGTTGGGGCCTATACATGGGGCATAGTCTCCGATAAATATGGACCGTCCCCGTTGAAGGATCGGAGGAGTCACTGA

Coding sequence (CDS)

ATGCGTTTTGGGAATTTTCGAATTCTTGTGCTTGCTTATGCTGGAATGGAATGGGTGTTGGAATCTATGGAATTGATGTTGATCTCCTTTGTTGGACTTGGAGTCCAGTCTGCGTGGAACCTTTCTCCCCATGAAGAGTCTTTGATCACCCGTGTGGTTTTTGCAAGTATGTTAGTTGGGGCCTATACATGGGGCATAGTCTCCGATAAATATGGACCGTCCCCGTTGAAGGATCGGAGGAGTCACTGA

Protein sequence

MRFGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAYTWGIVSDKYGPSPLKDRRSH*

Homology

[Close]

BLAST of MELO3C009081 vs. Swiss-Prot
Match: OCT7_ARATH (Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-23
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MRFGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
          M FG F+I VLAYAGM WV E+ME+ML+SFVG  VQS WNLS  +ESLIT VVFA ML+G
Sbjct: 17 MGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLITSVVFAGMLIG 76

Query: 61 AYTWGIVSDKYG 73
          AY+WGIVSDK+G
Sbjct: 77 AYSWGIVSDKHG 88

[Close]

BLAST of MELO3C009081 vs. Swiss-Prot
Match: SVOP_CAEEL (Putative transporter svop-1 OS=Caenorhabditis elegans GN=svop-1 PE=3 SV=5)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-08
Identity = 22/70 (31.43%), Postives = 43/70 (61.43%), Query Frame = 1


Query: 3   FGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
           FG F++ +    GM W+ ++ME+ML+S +   +   W +S  +++L+T  VF+ M++ + 
Sbjct: 78  FGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTTCVFSGMMLSST 137

Query: 63  TWGIVSDKYG 73
            WG + D++G
Sbjct: 138 FWGKICDRFG 147

[Close]

BLAST of MELO3C009081 vs. Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 24/70 (34.29%), Postives = 39/70 (55.71%), Query Frame = 1


Query: 3   FGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
           FG F+  +    G+ W+ ++ME+M++S +   +   W L   + +L+T VVF  M+  + 
Sbjct: 79  FGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMASSS 138

Query: 63  TWGIVSDKYG 73
            WG VSD+YG
Sbjct: 139 LWGNVSDQYG 148

[Close]

BLAST of MELO3C009081 vs. Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-07
Identity = 23/70 (32.86%), Postives = 39/70 (55.71%), Query Frame = 1


Query: 3   FGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
           FG F+  +    G+ W+ ++ME+M++S +   +   W L   + +L+T VVF  M+  + 
Sbjct: 79  FGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSST 138

Query: 63  TWGIVSDKYG 73
            WG +SD+YG
Sbjct: 139 LWGNISDQYG 148

[Close]

BLAST of MELO3C009081 vs. Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-07
Identity = 23/70 (32.86%), Postives = 39/70 (55.71%), Query Frame = 1


Query: 3   FGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
           FG F+  +    G+ W+ ++ME+M++S +   +   W L   + +L+T VVF  M+  + 
Sbjct: 79  FGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSST 138

Query: 63  TWGIVSDKYG 73
            WG +SD+YG
Sbjct: 139 LWGNISDQYG 148

[Close]

BLAST of MELO3C009081 vs. TrEMBL
Match: A0A0A0L6X7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198470 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-25
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1   MRFGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
           M FGNF+ILVLAYAGM WV E+ME+ML+SFVG  VQS+WNLSPHEESLIT VVFA MLVG
Sbjct: 35  MGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSSWNLSPHEESLITSVVFAGMLVG 94

Query: 61  AYTWGIVSDKYG 73
           AY WGIVSDKYG
Sbjct: 95  AYAWGIVSDKYG 106

[Close]

BLAST of MELO3C009081 vs. TrEMBL
Match: I1KVW4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G226400 PE=4 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-23
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 3  FGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
          FGNF+ILVLAYAG+ WV E+ME+ML+SFVG  VQ+AWNLS HEESLIT VVFA ML+GAY
Sbjct: 20 FGNFQILVLAYAGVGWVSEAMEMMLLSFVGPAVQTAWNLSAHEESLITSVVFAGMLIGAY 79

Query: 63 TWGIVSDKYG 73
          +WGIVSDK+G
Sbjct: 80 SWGIVSDKHG 89

[Close]

BLAST of MELO3C009081 vs. TrEMBL
Match: A0A0B2S0C6_GLYSO (Organic cation/carnitine transporter 7 OS=Glycine soja GN=glysoja_007155 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-23
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 3  FGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
          FGNF+ILVLAYAG+ WV E+ME+ML+SFVG  VQ+AWNLS HEESLIT VVFA ML+GAY
Sbjct: 20 FGNFQILVLAYAGVGWVSEAMEMMLLSFVGPAVQTAWNLSAHEESLITSVVFAGMLIGAY 79

Query: 63 TWGIVSDKYG 73
          +WGIVSDK+G
Sbjct: 80 SWGIVSDKHG 89

[Close]

BLAST of MELO3C009081 vs. TrEMBL
Match: A5AGQ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042940 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MRFGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
          M FGNF+ILVLAYAGM W+ E+ME+ML+SFVG  VQSAW LS HEESLIT VVFA MLVG
Sbjct: 17 MGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWGLSSHEESLITSVVFAGMLVG 76

Query: 61 AYTWGIVSDKYG 73
          AY+WGIVSD +G
Sbjct: 77 AYSWGIVSDNHG 88

[Close]

BLAST of MELO3C009081 vs. TrEMBL
Match: D7SRT9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g01610 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MRFGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
          M FGNF+ILVLAYAGM W+ E+ME+ML+SFVG  VQSAW LS HEESLIT VVFA MLVG
Sbjct: 17 MGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWGLSSHEESLITSVVFAGMLVG 76

Query: 61 AYTWGIVSDKYG 73
          AY+WGIVSD +G
Sbjct: 77 AYSWGIVSDNHG 88

[Close]

BLAST of MELO3C009081 vs. TAIR10
Match: AT3G13050.1 (AT3G13050.1 Major facilitator superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-24
Identity = 52/72 (72.22%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MRFGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
          M FG F+I VLAYAGM WV E+ME+ML+SFVG  VQS WNLS  +ESLIT VVFA ML+G
Sbjct: 17 MGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQESLITSVVFAGMLIG 76

Query: 61 AYTWGIVSDKYG 73
          AY+WGIVSDK+G
Sbjct: 77 AYSWGIVSDKHG 88

[Close]

BLAST of MELO3C009081 vs. NCBI nr
Match: gi|659112367|ref|XP_008456184.1| (PREDICTED: organic cation/carnitine transporter 7 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 1


Query: 1   MRFGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
           M FGNF+ILVLAYAGM W+ E+ME+ML+SFVG  VQSAWNLSPHEESLIT VVFA MLVG
Sbjct: 35  MGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWNLSPHEESLITSVVFAGMLVG 94

Query: 61  AYTWGIVSDKYG 73
           AYTWGIVSDKYG
Sbjct: 95  AYTWGIVSDKYG 106

[Close]

BLAST of MELO3C009081 vs. NCBI nr
Match: gi|449445929|ref|XP_004140724.1| (PREDICTED: organic cation/carnitine transporter 7 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-25
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1   MRFGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVG 60
           M FGNF+ILVLAYAGM WV E+ME+ML+SFVG  VQS+WNLSPHEESLIT VVFA MLVG
Sbjct: 35  MGFGNFQILVLAYAGMGWVSEAMEMMLLSFVGPAVQSSWNLSPHEESLITSVVFAGMLVG 94

Query: 61  AYTWGIVSDKYG 73
           AY WGIVSDKYG
Sbjct: 95  AYAWGIVSDKYG 106

[Close]

BLAST of MELO3C009081 vs. NCBI nr
Match: gi|571472684|ref|XP_006585686.1| (PREDICTED: organic cation/carnitine transporter 7-like [Glycine max])

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-23
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 3  FGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
          FGNF+ILVLAYAG+ WV E+ME+ML+SFVG  VQ+AWNLS HEESLIT VVFA ML+GAY
Sbjct: 20 FGNFQILVLAYAGVGWVSEAMEMMLLSFVGPAVQTAWNLSAHEESLITSVVFAGMLIGAY 79

Query: 63 TWGIVSDKYG 73
          +WGIVSDK+G
Sbjct: 80 SWGIVSDKHG 89

[Close]

BLAST of MELO3C009081 vs. NCBI nr
Match: gi|734416185|gb|KHN38113.1| (Organic cation/carnitine transporter 7 [Glycine soja])

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-23
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 3  FGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
          FGNF+ILVLAYAG+ WV E+ME+ML+SFVG  VQ+AWNLS HEESLIT VVFA ML+GAY
Sbjct: 20 FGNFQILVLAYAGVGWVSEAMEMMLLSFVGPAVQTAWNLSAHEESLITSVVFAGMLIGAY 79

Query: 63 TWGIVSDKYG 73
          +WGIVSDK+G
Sbjct: 80 SWGIVSDKHG 89

[Close]

BLAST of MELO3C009081 vs. NCBI nr
Match: gi|1021507608|ref|XP_016197133.1| (PREDICTED: organic cation/carnitine transporter 7 [Arachis ipaensis])

HSP 1 Score: 115.5 bits (288), Expect = 4.3e-23
Identity = 53/70 (75.71%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 3  FGNFRILVLAYAGMEWVLESMELMLISFVGLGVQSAWNLSPHEESLITRVVFASMLVGAY 62
          FGNF+ILVLAYAG+ WV E+ME+ML+SFVG  VQSAWNLSPH+ES IT  VFA ML+GAY
Sbjct: 20 FGNFQILVLAYAGIGWVSEAMEMMLLSFVGPAVQSAWNLSPHQESFITSAVFAGMLIGAY 79

Query: 63 TWGIVSDKYG 73
          +WGIVSDK+G
Sbjct: 80 SWGIVSDKHG 89

The following BLAST results are available for this feature:

BLAST of MELO3C009081 vs. Swiss-Prot


Match Name	E-value	Identity	Description
OCT7_ARATH	1.9e-23	72.22	Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1	[more]
SVOP_CAEEL	2.3e-08	31.43	Putative transporter svop-1 OS=Caenorhabditis elegans GN=svop-1 PE=3 SV=5	[more]
SVOP_XENLA	1.9e-07	34.29	Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1	[more]
SVOP_PONAB	2.5e-07	32.86	Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1	[more]
SVOP_HUMAN	2.5e-07	32.86	Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1	[more]

BLAST of MELO3C009081 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6X7_CUCSA	1.4e-25	81.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198470 PE=4 SV=1	[more]
I1KVW4_SOYBN	3.0e-23	77.14	Uncharacterized protein OS=Glycine max GN=GLYMA_08G226400 PE=4 SV=2	[more]
A0A0B2S0C6_GLYSO	3.0e-23	77.14	Organic cation/carnitine transporter 7 OS=Glycine soja GN=glysoja_007155 PE=4 SV...	[more]
A5AGQ9_VITVI	3.9e-23	76.39	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042940 PE=4 SV=1	[more]
D7SRT9_VITVI	3.9e-23	76.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g01610 PE=4 SV=...	[more]

BLAST of MELO3C009081 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13050.1	1.1e-24	72.22	Major facilitator superfamily protein	[more]

BLAST of MELO3C009081 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112367\|ref\|XP_008456184.1\|	3.2e-26	83.33	PREDICTED: organic cation/carnitine transporter 7 [Cucumis melo]	[more]
gi\|449445929\|ref\|XP_004140724.1\|	2.1e-25	81.94	PREDICTED: organic cation/carnitine transporter 7 [Cucumis sativus]	[more]
gi\|571472684\|ref\|XP_006585686.1\|	4.3e-23	77.14	PREDICTED: organic cation/carnitine transporter 7-like [Glycine max]	[more]
gi\|734416185\|gb\|KHN38113.1\|	4.3e-23	77.14	Organic cation/carnitine transporter 7 [Glycine soja]	[more]
gi\|1021507608\|ref\|XP_016197133.1\|	4.3e-23	75.71	PREDICTED: organic cation/carnitine transporter 7 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR020846	MFS_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006865	amino acid transport
biological_process	GO:0009860	pollen tube growth
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0009827	plant-type cell wall modification
biological_process	GO:2001143	N-methylnicotinate transport
biological_process	GO:0015706	nitrate transport
biological_process	GO:2001142	nicotinate transport
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0009693	ethylene biosynthetic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0090416	nicotinate transporter activity
molecular_function	GO:0090417	N-methylnicotinate transporter activity
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009081T1	MELO3C009081T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020846	Major facilitator superfamily domain	PROFILE	PS50850	MFS	coord: 10..82 score: 9
IPR020846	Major facilitator superfamily domain	unknown	SSF103473	MFS general substrate transporter	coord: 4..75 score: 4.3
None	No IPR available	GENE3D	G3DSA:1.20.1250.20		coord: 10..75 score: 1.
None	No IPR available	PANTHER	PTHR24064	FAMILY NOT NAMED	coord: 1..72 score: 4.2
None	No IPR available	PANTHER	PTHR24064:SF287	SUBFAMILY NOT NAMED	coord: 1..72 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C009081	Silver-seed gourd	carmeB0195
MELO3C009081	Silver-seed gourd	carmeB0288
MELO3C009081	Cucumber (Chinese Long) v3	cucmeB343
MELO3C009081	Watermelon (97103) v2	mewmbB534
MELO3C009081	Wax gourd	mewgoB642
MELO3C009081	Cucurbita maxima (Rimu)	cmameB613
MELO3C009081	Cucurbita maxima (Rimu)	cmameB810
MELO3C009081	Cucurbita moschata (Rifu)	cmomeB601
MELO3C009081	Cucurbita moschata (Rifu)	cmomeB794
MELO3C009081	Cucumber (Chinese Long) v2	cumeB331
MELO3C009081	Cucumber (Chinese Long) v2	cumeB336
MELO3C009081	Watermelon (Charleston Gray)	mewcgB526
MELO3C009081	Watermelon (97103) v1	mewmB588
MELO3C009081	Cucurbita pepo (Zucchini)	cpemeB072
MELO3C009081	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C009081	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C009081	Cucumber (Gy14) v2	cgybmeB285