MELO3C009037 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C009037
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Mutator-like transposase
Location	chr8 : 18584962 .. 18585169 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAAGACTATGGCATAAATATGAGTTATGAAAAAGCATGGCGTGCTAGAGAAAATGCATATGAACGAGTGCGAGGGTCTCCTGAAGAGTCATATAATCTTTTGCGTAGATATGGTGAAGCACTCAAACTTACAAATCCAGGTACAATATTTCACATGAAACTCGAAGATGATCATTTCTTCAAATATCTTTTTATGGTTGTTG

mRNA sequence

ATGAGGCAAGACTATGGCATAAATATGAGTTATGAAAAAGCATGGCGTGCTAGAGAAAATGCATATGAACGAGTGCGAGGGTCTCCTGAAGAGTCATATAATCTTTTGCGTAGATATGGTGAAGCACTCAAACTTACAAATCCAGGTACAATATTTCACATGAAACTCGAAGATGATCATTTCTTCAAATATCTTTTTATGGTTGTTG

Coding sequence (CDS)

ATGAGGCAAGACTATGGCATAAATATGAGTTATGAAAAAGCATGGCGTGCTAGAGAAAATGCATATGAACGAGTGCGAGGGTCTCCTGAAGAGTCATATAATCTTTTGCGTAGATATGGTGAAGCACTCAAACTTACAAATCCAGGTACAATATTTCACATGAAACTCGAAGATGATCATTTCTTCAAATATCTTTTTATGGTTGTTG

Protein sequence

MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKLTNPGTIFHMKLEDDHFFKYLFMVV

Homology

[Close]

BLAST of MELO3C009037 vs. TrEMBL
Match: Q5GIT1_CUCME (MuDRA transposase-like OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.4e-29
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1   MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKLTNPGTIFHMKLEDDH 60
           MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALK TN GTIFHM+LEDD 
Sbjct: 348 MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKFTNSGTIFHMELEDDR 407

Query: 61  FFKYLFMVV 70
           FFKYLFM V
Sbjct: 408 FFKYLFMAV 416

[Close]

BLAST of MELO3C009037 vs. TrEMBL
Match: U5D175_AMBTC (Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s04652p00001680 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.8e-13
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1


Query: 1   MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKLTNPGTIFHMKLEDDH 60
           M+  YG+ M+Y KAWR++E+A E +RG   ESY LL  +   L+ TNPGTI HM+ EDD+
Sbjct: 221 MKHKYGVRMNYMKAWRSKEHAQEELRGKANESYRLLPGFLHMLQKTNPGTIVHMETEDDN 280

Query: 61  FFKYLFMVV 70
            FKYLF+ +
Sbjct: 281 SFKYLFVAL 289

[Close]

BLAST of MELO3C009037 vs. TrEMBL
Match: A5AN76_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008803 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.8e-12
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 1   MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKLTNPGTIFHMKLEDDH 60
           +R  YG+ +SY+KAWRARE A+  +RGSPEESY++L  Y   L+  NPGTI  +  + D+
Sbjct: 355 IRNKYGVQISYDKAWRAREFAFNSIRGSPEESYDVLPSYCYMLEQKNPGTITDIVTDVDN 414

Query: 61  FFKYLFM 68
            FKYLFM
Sbjct: 415 KFKYLFM 421

[Close]

BLAST of MELO3C009037 vs. TrEMBL
Match: A5C2Y8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011863 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-11
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 1


Query: 1   MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKLTNPGTIFHMKLEDDH 60
           +R+ YG+ +SY+KAWRARE A   +RGSP+ESYN L  Y   L+  NPGTI  + ++ D+
Sbjct: 128 IRKQYGVQISYDKAWRARELALGSIRGSPKESYNTLPSYCYVLEQKNPGTITDIVIDCDN 187

Query: 61  FFKYLFMVV 70
            FKY FM +
Sbjct: 188 QFKYFFMSI 196

[Close]

BLAST of MELO3C009037 vs. TrEMBL
Match: A5ADM9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004945 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-10
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1


Query: 1   MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKLTNPGTIFHMKLEDDH 60
           +R+ YG+ +SY+KAWRA+E A   +RGSPEESYN L  Y   L+  N GTI  +  + D+
Sbjct: 264 IRKQYGVQISYDKAWRAKELAXGSIRGSPEESYNTLSSYCXVLEQKNLGTITDIVTDCDN 323

Query: 61  FFKYLFMVV 70
            FKY FM +
Sbjct: 324 QFKYFFMSI 332

[Close]

BLAST of MELO3C009037 vs. NCBI nr
Match: gi|46398239|gb|AAS91797.1| (MuDRA-like transposase [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1   MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKLTNPGTIFHMKLEDDH 60
           MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALK TN GTIFHM+LEDD 
Sbjct: 348 MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKFTNSGTIFHMELEDDR 407

Query: 61  FFKYLFMVV 70
           FFKYLFM V
Sbjct: 408 FFKYLFMAV 416

[Close]

BLAST of MELO3C009037 vs. NCBI nr
Match: gi|778703149|ref|XP_004149682.2| (PREDICTED: uncharacterized protein LOC101207197 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-27
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 1


Query: 1   MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKLTNPGTIFHMKLEDDH 60
           MRQDYGINMSYEKAWRARENAYERVRG PEESYNLL RYGEALKL N GTIFHM+LED+ 
Sbjct: 61  MRQDYGINMSYEKAWRARENAYERVRGCPEESYNLLLRYGEALKLANVGTIFHMELEDNR 120

Query: 61  FFKYLFMVV 70
           FFKYLFM V
Sbjct: 121 FFKYLFMAV 129

[Close]

BLAST of MELO3C009037 vs. NCBI nr
Match: gi|778688681|ref|XP_011652811.1| (PREDICTED: uncharacterized protein LOC101218844 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 3.4e-21
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 9  MSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKLTNPGTIFHMKLEDDHFFKYLFMV 68
          MSYEKAWRARENAYERVR  PEESYNLL RYGEALKL N GTIFHM+LED+ FFKYLFM 
Sbjct: 1  MSYEKAWRARENAYERVRRCPEESYNLLLRYGEALKLANVGTIFHMELEDNRFFKYLFMA 60

Query: 69 V 70
          V
Sbjct: 61 V 61

[Close]

BLAST of MELO3C009037 vs. NCBI nr
Match: gi|658015373|ref|XP_008343020.1| (PREDICTED: uncharacterized protein LOC103405783 [Malus domestica])

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-13
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 1   MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKLTNPGTIFHMKLEDDH 60
           MR   G+NMSYEKAWRARE+A++ +RGSPEES+  L  Y   L+  NPGTI H++ +D++
Sbjct: 215 MRAQVGVNMSYEKAWRAREHAFDMIRGSPEESFAALPAYCXMLEXKNPGTITHIETDDNN 274

Query: 61  FFKYLFMVV 70
            F Y FM +
Sbjct: 275 HFLYFFMAM 283

[Close]

BLAST of MELO3C009037 vs. NCBI nr
Match: gi|658007113|ref|XP_008338733.1| (PREDICTED: uncharacterized protein LOC103401792 [Malus domestica])

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-13
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 1   MRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKLTNPGTIFHMKLEDDH 60
           MR   G+NMSYEKAWRARE+A++ +RGSPEES+  L  Y   L+  NPGTI H++ +D++
Sbjct: 247 MRAQVGVNMSYEKAWRAREHAFDMIRGSPEESFAALPAYCXMLEXKNPGTITHIETDDNN 306

Query: 61  FFKYLFMVV 70
            F Y FM +
Sbjct: 307 HFLYFFMAM 315

The following BLAST results are available for this feature:

BLAST of MELO3C009037 vs. TrEMBL


Match Name	E-value	Identity	Description
Q5GIT1_CUCME	1.4e-29	92.75	MuDRA transposase-like OS=Cucumis melo PE=4 SV=1	[more]
U5D175_AMBTC	6.8e-13	52.17	Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s04652p000016...	[more]
A5AN76_VITVI	9.8e-12	53.73	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008803 PE=4 SV=1	[more]
A5C2Y8_VITVI	2.9e-11	50.72	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011863 PE=4 SV=1	[more]
A5ADM9_VITVI	4.1e-10	49.28	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004945 PE=4 SV=1	[more]

BLAST of MELO3C009037 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|46398239\|gb\|AAS91797.1\|	2.0e-29	92.75	MuDRA-like transposase [Cucumis melo]	[more]
gi\|778703149\|ref\|XP_004149682.2\|	3.1e-27	88.41	PREDICTED: uncharacterized protein LOC101207197 [Cucumis sativus]	[more]
gi\|778688681\|ref\|XP_011652811.1\|	3.4e-21	85.25	PREDICTED: uncharacterized protein LOC101218844 [Cucumis sativus]	[more]
gi\|658015373\|ref\|XP_008343020.1\|	2.0e-13	53.62	PREDICTED: uncharacterized protein LOC103405783 [Malus domestica]	[more]
gi\|658007113\|ref\|XP_008338733.1\|	2.0e-13	53.62	PREDICTED: uncharacterized protein LOC103401792 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009037T1	MELO3C009037T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31973	FAMILY NOT NAMED	coord: 2..67 score: 8.5
None	No IPR available	PANTHER	PTHR31973:SF0	SUBFAMILY NOT NAMED	coord: 2..67 score: 8.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C009037	Cucumber (Chinese Long) v3	cucmeB332
MELO3C009037	Watermelon (97103) v2	mewmbB534
MELO3C009037	Watermelon (97103) v2	mewmbB547
MELO3C009037	Wax gourd	mewgoB642
MELO3C009037	Cucumber (Gy14) v1	cgymeB576
MELO3C009037	Cucumber (Gy14) v1	cgymeB577
MELO3C009037	Cucurbita maxima (Rimu)	cmameB623
MELO3C009037	Cucurbita maxima (Rimu)	cmameB613
MELO3C009037	Cucurbita moschata (Rifu)	cmomeB601
MELO3C009037	Cucurbita moschata (Rifu)	cmomeB610
MELO3C009037	Wild cucumber (PI 183967)	cpimeB328
MELO3C009037	Cucumber (Chinese Long) v2	cumeB329
MELO3C009037	Cucumber (Chinese Long) v2	cumeB332
MELO3C009037	Watermelon (Charleston Gray)	mewcgB526
MELO3C009037	Watermelon (Charleston Gray)	mewcgB537
MELO3C009037	Watermelon (97103) v1	mewmB579
MELO3C009037	Cucurbita pepo (Zucchini)	cpemeB068
MELO3C009037	Cucurbita pepo (Zucchini)	cpemeB072
MELO3C009037	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C009037	Bottle gourd (USVL1VR-Ls)	lsimeB160
MELO3C009037	Cucumber (Gy14) v2	cgybmeB285