MELO3C008989.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C008989.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr08 : 21677466 .. 21677918 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCGCATCCTATAATGAAGGGGCTCCTTAACAAACCCTTTCCTTATTACGACGAACTTGCATATATGTTTGGGTGTGATAGGGCGATGGGTCGCTTTACTGAGACACTCGCCGATGAGTCTAAGAAGCTTGTCAGATATGAGGGGTTTGACATGCCGGATGGAAACGAGGAGTTCTCATCCACATATAACCAGGGGATTCACATGTCCCAGGAGGATGTACGCATATCACGACCTACTATGCGTCAGACGGTAAGGTCGGATCGAGCGGATCGAAGAGGAAGAGAGGAAACTAGCGGGAGGGTGAGCTTGAAGTCATACATATGGCCCTTGAGTGTACAAATGACCAACTCAGGACGATTGTCGAGTGGCCTGCACGCTCCCTTGCCAAAGACACCCATGTTCGCCAGGAATTCTTACGCCTATTGCGTGAGATGCCAACCTAAATAG

mRNA sequence

ATGCAGTCGCATCCTATAATGAAGGGGCTCCTTAACAAACCCTTTCCTTATTACGACGAACTTGCATATATGTTTGGGTGTGATAGGGCGATGGGTCGCTTTACTGAGACACTCGCCGATGAGTCTAAGAAGCTTGTCAGATATGAGGGGTTTGACATGCCGGATGGAAACGAGGAGTTCTCATCCACATATAACCAGGGGATTCACATGTCCCAGGAGGATGTACGCATATCACGACCTACTATGCGTCAGACGGTAAGGTCGGATCGAGCGGATCGAAGAGGAAGAGAGGAAACTAGCGGGAGGGTGAGCTTGAAGTCATACATATGGCCCTTGAGTGTACAAATGACCAACTCAGGACGATTGTCGAGTGGCCTGCACGCTCCCTTGCCAAAGACACCCATGTTCGCCAGGAATTCTTACGCCTATTGCGTGAGATGCCAACCTAAATAG

Coding sequence (CDS)

ATGCAGTCGCATCCTATAATGAAGGGGCTCCTTAACAAACCCTTTCCTTATTACGACGAACTTGCATATATGTTTGGGTGTGATAGGGCGATGGGTCGCTTTACTGAGACACTCGCCGATGAGTCTAAGAAGCTTGTCAGATATGAGGGGTTTGACATGCCGGATGGAAACGAGGAGTTCTCATCCACATATAACCAGGGGATTCACATGTCCCAGGAGGATGTACGCATATCACGACCTACTATGCGTCAGACGGTAAGGTCGGATCGAGCGGATCGAAGAGGAAGAGAGGAAACTAGCGGGAGGGTGAGCTTGAAGTCATACATATGGCCCTTGAGTGTACAAATGACCAACTCAGGACGATTGTCGAGTGGCCTGCACGCTCCCTTGCCAAAGACACCCATGTTCGCCAGGAATTCTTACGCCTATTGCGTGAGATGCCAACCTAAATAG

Protein sequence

MQSHPIMKGLLNKPFPYYDELAYMFGCDRAMGRFTETLADESKKLVRYEGFDMPDGNEEFSSTYNQGIHMSQEDVRISRPTMRQTVRSDRADRRGREETSGRVSLKSYIWPLSVQMTNSGRLSSGLHAPLPKTPMFARNSYAYCVRCQPK
BLAST of MELO3C008989.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 0

Query: 1   MQSHPIMKGLLNKPFPYYDELAYMFGCDRAMGRFTETLAD--ESKKLVRYEGFDMPDGNE 60
           ++S P  KGLLN PFPYYDEL Y+FG DRA GRF ET AD   ++    Y+ FDM DGNE
Sbjct: 429 VRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 488

Query: 61  EFSSTYNQGIHMSQEDVRISRPT 82
           +F   Y++G+ + Q+DVR SRP+
Sbjct: 489 DFPPVYSRGVDILQDDVRASRPS 511

BLAST of MELO3C008989.2 vs. NCBI nr
Match: XP_008444620.1 (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 4.0e-15
Identity = 54/104 (51.92%), Postives = 62/104 (59.62%), Query Frame = 0

Query: 4   HPIMKGLLNKPFPYYDELAYMFGCDRAMGRFTETLAD-ESKKLVRYEGFDMPDGNE-EFS 63
           HP+ K LLNK FPYYDELAY+F  DRA GR  ET  D  S    RYEGF  PDGN+ E  
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIP 91

Query: 64  STYNQGIHMSQEDVRISRPTMRQTVRSDRADRRGREETSGRVSL 106
           + Y+QG +MSQEDV   RP       S  +D R R   S R S+
Sbjct: 92  TIYSQGFNMSQEDVWAPRP-------SSASDSRTRSSGSKRGSV 128

BLAST of MELO3C008989.2 vs. NCBI nr
Match: ABQ53639.1 (transposase [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 8.6e-10
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 2   QSHPIMKGLLNKPFPYYDELAYMFGCDRAMGRFTETLAD-ESKKLVRYEGFDMPDGNEEF 61
           Q+HP  KGLLNK FPYYDEL Y+F  DR  G+  +T  + ES   + YEGF  PD N+  
Sbjct: 276 QTHPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMK 335

Query: 62  SST-YNQGIHMS 72
           + T Y+QG +MS
Sbjct: 336 NPTMYSQGFNMS 347

BLAST of MELO3C008989.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 9.5e-09
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = 0

Query: 1   MQSHPIMKGLLNKPFPYYDELAYMFGCDRAMGRFTETLADESKKLVRYEGFDMPDG---N 60
           ++SHP  KGLL+K FPYYD+L+Y+FG DRA G  +ET  +    +       +P G   +
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 61  EEFSSTYNQGIHMSQED---VRISRPTMRQTVRSDRADRRGRE 98
           E+  + Y+QG+HMS ++   +R  + + R+   S    +RG E
Sbjct: 172 EDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSE 214

BLAST of MELO3C008989.2 vs. NCBI nr
Match: XP_016900727.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 8   KGLLNKPFPYYDELAYMFGCDRAMGRFTETLAD-ESKKLVRYEGFDMPDGNE-EFSS 63
           K LLNKPF YYDELAY F  D++ GRF ET A+  S + V YE FD+PDGN+ EF S
Sbjct: 206 KCLLNKPFSYYDELAYAFERDKSRGRFVETFANVGSNEPVGYEEFDVPDGNDMEFPS 262

BLAST of MELO3C008989.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.2e-17
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 0

Query: 1   MQSHPIMKGLLNKPFPYYDELAYMFGCDRAMGRFTETLAD--ESKKLVRYEGFDMPDGNE 60
           ++S P  KGLLN PFPYYDEL Y+FG DRA GRF ET AD   ++    Y+ FDM DGNE
Sbjct: 429 VRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 488

Query: 61  EFSSTYNQGIHMSQEDVRISRPT 82
           +F   Y++G+ + Q+DVR SRP+
Sbjct: 489 DFPPVYSRGVDILQDDVRASRPS 511

BLAST of MELO3C008989.2 vs. TrEMBL
Match: tr|A0A1S3BAQ2|A0A1S3BAQ2_CUCME (uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.6e-15
Identity = 54/104 (51.92%), Postives = 62/104 (59.62%), Query Frame = 0

Query: 4   HPIMKGLLNKPFPYYDELAYMFGCDRAMGRFTETLAD-ESKKLVRYEGFDMPDGNE-EFS 63
           HP+ K LLNK FPYYDELAY+F  DRA GR  ET  D  S    RYEGF  PDGN+ E  
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIP 91

Query: 64  STYNQGIHMSQEDVRISRPTMRQTVRSDRADRRGREETSGRVSL 106
           + Y+QG +MSQEDV   RP       S  +D R R   S R S+
Sbjct: 92  TIYSQGFNMSQEDVWAPRP-------SSASDSRTRSSGSKRGSV 128

BLAST of MELO3C008989.2 vs. TrEMBL
Match: tr|A5Y732|A5Y732_CUCME (Transposase OS=Cucumis melo OX=3656 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.7e-10
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 2   QSHPIMKGLLNKPFPYYDELAYMFGCDRAMGRFTETLAD-ESKKLVRYEGFDMPDGNEEF 61
           Q+HP  KGLLNK FPYYDEL Y+F  DR  G+  +T  + ES   + YEGF  PD N+  
Sbjct: 276 QTHPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMK 335

Query: 62  SST-YNQGIHMS 72
           + T Y+QG +MS
Sbjct: 336 NPTMYSQGFNMS 347

BLAST of MELO3C008989.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.3e-09
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = 0

Query: 1   MQSHPIMKGLLNKPFPYYDELAYMFGCDRAMGRFTETLADESKKLVRYEGFDMPDG---N 60
           ++SHP  KGLL+K FPYYD+L+Y+FG DRA G  +ET  +    +       +P G   +
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 61  EEFSSTYNQGIHMSQED---VRISRPTMRQTVRSDRADRRGRE 98
           E+  + Y+QG+HMS ++   +R  + + R+   S    +RG E
Sbjct: 172 EDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSE 214

BLAST of MELO3C008989.2 vs. TrEMBL
Match: tr|A0A1S4DXM4|A0A1S4DXM4_CUCME (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC107991003 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.1e-08
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 8   KGLLNKPFPYYDELAYMFGCDRAMGRFTETLAD-ESKKLVRYEGFDMPDGNE-EFSS 63
           K LLNKPF YYDELAY F  D++ GRF ET A+  S + V YE FD+PDGN+ EF S
Sbjct: 206 KCLLNKPFSYYDELAYAFERDKSRGRFVETFANVGSNEPVGYEEFDVPDGNDMEFPS 262

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADN33754.11.2e-1655.42retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008444620.14.0e-1551.92PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
ABQ53639.18.6e-1051.39transposase [Cucumis melo][more]
XP_008441954.19.5e-0936.89PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
XP_016900727.11.4e-0761.40PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|E5GBB2|E5GBB2_CUCME8.2e-1755.42Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3BAQ2|A0A1S3BAQ2_CUCME2.6e-1551.92uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=... [more]
tr|A5Y732|A5Y732_CUCME5.7e-1051.39Transposase OS=Cucumis melo OX=3656 PE=4 SV=1[more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME6.3e-0936.89uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|A0A1S4DXM4|A0A1S4DXM4_CUCME9.1e-0861.40glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008989.2.1MELO3C008989.2.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None