MELO3C008915 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008915
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_92
Location	chr8 : 22152628 .. 22152935 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGAACACATCCTGCAGCAAAAGGATTCCTCAACAAGCCTTTCCCACATTATGATGAGTTGTCGTACGTCTTCGAAAAAGATCGTGAGATAAGAGCACGTGCAGAGATGTTTTCTGACATCGAGTCGAACGTGCCAGGACCTAGCGATGGTGTGCAAGCAAAAAATATCCTTGATATGGAGTTTCTAGCTACGTGTAGGCCCAGGATGAACATGTCGCCCGACATGGACTGTATGGCCGGACAATCTGGTAGGTCCGACGATTGTAGGTCGGGTTCTAACAATAAAAAAAGGAAGTACGACATGTAG

mRNA sequence

TCCGAACACATCCTGCAGCAAAAGGATTCCTCAACAAGCCTTTCCCACATTATGATGAGTTGTCGTACGTCTTCGAAAAAGATCGTGAGATAAGAGCACGTGCAGAGATGTTTTCTGACATCGAGTCGAACGTGCCAGGACCTAGCGATGGTGTGCAAGCAAAAAATATCCTTGATATGGAGTTTCTAGCTACGTGTAGGCCCAGGATGAACATGTCGCCCGACATGGACTGTATGGCCGGACAATCTGGTAGGTCCGACGATTGTAGGTCGGGTTCTAACAATAAAAAAAGGAAGTACGACATGTAG

Coding sequence (CDS)

TCCGAACACATCCTGCAGCAAAAGGATTCCTCAACAAGCCTTTCCCACATTATGATGAGTTGTCGTACGTCTTCGAAAAAGATCGTGAGATAAGAGCACGTGCAGAGATGTTTTCTGACATCGAGTCGAACGTGCCAGGACCTAGCGATGGTGTGCAAGCAAAAAATATCCTTGATATGGAGTTTCTAGCTACGTGTAGGCCCAGGATGAACATGTCGCCCGACATGGACTGTATGGCCGGACAATCTGGTAGGTCCGACGATTGTAGGTCGGGTTCTAACAATAAAAAAAGGAAGTACGACATGTAG

Protein sequence

RTHPAAKGFLNKPFPHYDELSYVFEKDREIRARAEMFSDIESNVPGPSDGVQAKNILDMEFLATCRPRMNMSPDMDCMAGQSGRSDDCRSGSNNKKRKYDM*

Homology

[Close]

BLAST of MELO3C008915 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 1


Query: 2   THPAAKGFLNKPFPHYDELSYVFEKDREIRARAEMFSDIESNVPGPSDGVQAKNILDMEF 61
           +HPAAKG LNK F HYDELSYVF KDR    RAE F+DI SN P   D   A  + D +F
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 525

Query: 62  LATCRPRMNMSPDMDCMAGQSGRSDDCRSGSNNKKRK 99
                P +NMSPD D M  ++ R  + R+ S+  KRK
Sbjct: 526 PPMYSPGLNMSPD-DLMETRTARVSERRNVSSGSKRK 561

[Close]

BLAST of MELO3C008915 vs. TrEMBL
Match: A0A0A0KQ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-12
Identity = 47/96 (48.96%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 1   RTHPAAKGFLNKPFPHYDELSYVFEKDREIRARAEMFSDIESNVPGPSDGVQAKNILDME 60
           RT+PA KG LNK FPHY  LSYVF KD                   PS  V  ++ L +E
Sbjct: 57  RTYPATKGLLNKVFPHYGMLSYVFGKDHTKGPVWRYSRTSGPTCKDPSACVPTEDGLKIE 116

Query: 61  FLATCRPRMNMSPDMDCMAGQSGRSDDCRSGSNNKK 97
           F   C PRMN+S D D M GQSGR  DCRSG   KK
Sbjct: 117 FPTMCSPRMNLSLD-DMMVGQSGRFSDCRSGLTIKK 151

[Close]

BLAST of MELO3C008915 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-08
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 1


Query: 1   RTHPAAKGFLNKPFPHYDELSYVFEKDREIRARAEMFSDIESNVPGPSDGVQAKNILDME 60
           R+ PAAKG LN PFP+YDEL+YVF +DR     AE F+D+ SN PG           + +
Sbjct: 430 RSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED 489

Query: 61  FLATCRPRMNMSPDMDCMAGQSGRSDDCRSGSNNKKRK 99
           F       +++  D D  A +  R+ + ++GS+  KRK
Sbjct: 490 FPPVYSRGVDILQD-DVRASRPSRASEGKTGSSGSKRK 526

[Close]

BLAST of MELO3C008915 vs. TrEMBL
Match: A5Y732_CUCME (Transposase OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1


Query: 1   RTHPAAKGFLNKPFPHYDELSYVFEKDREIRARAEMFSDIESNVPGPSDGVQAKNILDME 60
           +THPAAKG LNK FP+YDEL YVFE+DR      + F ++ESN P   +G Q  +  DM+
Sbjct: 276 QTHPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMK 335

Query: 61  FLATCRPRMNMS 73
                    NMS
Sbjct: 336 NPTMYSQGFNMS 347

[Close]

BLAST of MELO3C008915 vs. NCBI nr
Match: gi|659118460|ref|XP_008459131.1| (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-15
Identity = 49/98 (50.00%), Postives = 60/98 (61.22%), Query Frame = 1


Query: 2   THPAAKGFLNKPFPHYDELSYVFEKDREIRARAEMFSDIESNVPGPSDGVQAKNILDMEF 61
           +HPAAKG LNK F HYDELSYVF KDR    RAE+F+DI SN P   D   A    D  F
Sbjct: 102 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPAGYDAFVADAAPDTNF 161

Query: 62  LATCRPRMNMSPDMDCMAGQSGRSDDCRSGSNNKKRKY 100
                PR+NMSPD D M  ++ R  + R+ S+  +RK+
Sbjct: 162 SPMYSPRLNMSPD-DLMETRTARVSERRNVSSGSRRKH 198

[Close]

BLAST of MELO3C008915 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-14
Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 1


Query: 2   THPAAKGFLNKPFPHYDELSYVFEKDREIRARAEMFSDIESNVPGPSDGVQAKNILDMEF 61
           +HPAAKG LNK F HYDELSYVF KDR    RAE F+DI SN P   D   A  + D +F
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 525

Query: 62  LATCRPRMNMSPDMDCMAGQSGRSDDCRSGSNNKKRK 99
                P +NMSPD D M  ++ R  + R+ S+  KRK
Sbjct: 526 PPMYSPGLNMSPD-DLMETRTARVSERRNVSSGSKRK 561

[Close]

BLAST of MELO3C008915 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 5.0e-13
Identity = 45/97 (46.39%), Postives = 56/97 (57.73%), Query Frame = 1


Query: 2   THPAAKGFLNKPFPHYDELSYVFEKDREIRARAEMFSDIESNVPGPSDGVQAKNILDMEF 61
           +HPAAKG LNK FPHYDELSYVF KD     RAE F+D+ SN P   D   A    D +F
Sbjct: 60  SHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTDF 119

Query: 62  LATCRPRMNMSPDMDCMAGQSGRSDDCRSGSNNKKRK 99
                  +NMSPD + M  ++ R  + R  S+  K+K
Sbjct: 120 QPMYSRGLNMSPD-ELMGTRTARVSEGRYVSSGSKQK 155

[Close]

BLAST of MELO3C008915 vs. NCBI nr
Match: gi|700195822|gb|KGN50999.1| (hypothetical protein Csa_5G387990 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 47/96 (48.96%), Postives = 52/96 (54.17%), Query Frame = 1


Query: 1   RTHPAAKGFLNKPFPHYDELSYVFEKDREIRARAEMFSDIESNVPGPSDGVQAKNILDME 60
           RT+PA KG LNK FPHY  LSYVF KD                   PS  V  ++ L +E
Sbjct: 57  RTYPATKGLLNKVFPHYGMLSYVFGKDHTKGPVWRYSRTSGPTCKDPSACVPTEDGLKIE 116

Query: 61  FLATCRPRMNMSPDMDCMAGQSGRSDDCRSGSNNKK 97
           F   C PRMN+S D D M GQSGR  DCRSG   KK
Sbjct: 117 FPTMCSPRMNLSLD-DMMVGQSGRFSDCRSGLTIKK 151

[Close]

BLAST of MELO3C008915 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 3.2e-12
Identity = 46/98 (46.94%), Postives = 56/98 (57.14%), Query Frame = 1


Query: 2   THPAAKGFLNKPFPHYDELSYVFEKDREIRARAEMFSDIESNVPGPSDGVQAKNILDMEF 61
           +HP AKG LNK F HYDELSYVF KDR    RAE F+DI SN P   D   A    D +F
Sbjct: 452 SHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNHPAGYDAFPADAAPDTDF 511

Query: 62  LATCRPRMNMSPDMDCMAGQSGRSDDCRSGSNNKKRKY 100
                  +NMS D D M  ++ R  + R+ S+  KRK+
Sbjct: 512 PPMYSLGLNMSAD-DLMETRTARVSERRNVSSGSKRKH 548

The following BLAST results are available for this feature:

BLAST of MELO3C008915 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB5_CUCME	1.8e-14	50.52	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KQ83_CUCSA	2.2e-12	48.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1	[more]
E5GBB2_CUCME	4.4e-08	38.78	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A5Y732_CUCME	1.3e-07	47.22	Transposase OS=Cucumis melo PE=4 SV=1	[more]

BLAST of MELO3C008915 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118460\|ref\|XP_008459131.1\|	3.1e-15	50.00	PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo]	[more]
gi\|307136287\|gb\|ADN34114.1\|	2.6e-14	50.52	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659123900\|ref\|XP_008461893.1\|	5.0e-13	46.39	PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo]	[more]
gi\|700195822\|gb\|KGN50999.1\|	3.2e-12	48.96	hypothetical protein Csa_5G387990 [Cucumis sativus]	[more]
gi\|659126986\|ref\|XP_008463462.1\|	3.2e-12	46.94	PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008915T1	MELO3C008915T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008915	Cucumber (Chinese Long) v3	cucmeB336
MELO3C008915	Watermelon (97103) v2	mewmbB534
MELO3C008915	Wax gourd	mewgoB656
MELO3C008915	Cucumber (Gy14) v1	cgymeB444
MELO3C008915	Cucurbita maxima (Rimu)	cmameB620
MELO3C008915	Cucurbita maxima (Rimu)	cmameB806
MELO3C008915	Cucurbita moschata (Rifu)	cmomeB612
MELO3C008915	Cucurbita moschata (Rifu)	cmomeB790
MELO3C008915	Wild cucumber (PI 183967)	cpimeB324
MELO3C008915	Wild cucumber (PI 183967)	cpimeB334
MELO3C008915	Cucumber (Chinese Long) v2	cumeB326
MELO3C008915	Watermelon (Charleston Gray)	mewcgB526
MELO3C008915	Watermelon (97103) v1	mewmB576
MELO3C008915	Cucurbita pepo (Zucchini)	cpemeB074
MELO3C008915	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C008915	Cucumber (Gy14) v2	cgybmeB285
MELO3C008915	Silver-seed gourd	carmeB0286
MELO3C008915	Silver-seed gourd	carmeB0529