MELO3C008876.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C008876.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionmediator of RNA polymerase II transcription subunit 11
Locationchr08 : 24958298 .. 24966159 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGACACTTCTAGGTAGTTTTTAAGTTGGTTTGAGGGTGAAATTGTTGTTGAAGTAATTTTGAGACTTGAAATGCTACTTTCACACATTTTAAAAACCTTTTAGGTTGGCATTGAGTTTGAAAGTCAAACTTAGGAATTTTTAGGTTGGTTTTGGTTTTCACCTTGAAAGTCTCATTTAGGCATTTTAAAGATACGTTGATAGTTAAAGTAACACTTAGACACTTATTGGGTACTTTTTAGATTGATTTGAAAGTAAAATTGATATTTTGAAGTAATATTTGAGATTTGGAGTGCTACTTTCACAAAAGCCCATGGGATGTCTCGAATCCGAAGCAGCCACCAAGCAAATCCCTAACCCAAGTTGGAGTGCCCGAATCCAACCCTAGCCTGCCCGATTTCCTTCCGTTCTTTTCCTCTATGTAGATCATCCTACCGTTTCCCAGATTTCCGACCACAAACACCTTCCTATCTATTTTGAACTTTCCCATCTCGTAGCTTTCCTTACAGTTTTTGAGAGAAAAGTTAGAGAGAGAATAGGGAATCTACTTTTTTGAGGATCTATATTGTTCATCGTTAATGCCTTCACAATCTATTGGATGTGGCAGAAACCTTAAACCTGGTTTTTTGGTGAAGAGATCCTTGTAATAACGGATGAATTCAGCTTTAATTGAGATGTTGACGTTTATTACTTATTAGGACACAGGTTTGTTTACCATTTTTAAATTTTTAATTTTGTTCAAAAGATTAGTTTGTTTAAATTTCTTATTGCTATGTGATTTATCACAGCCAGCATAGCTCTTGATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTCCAAAATGTTGAGAAGGTTGGAATTACTTTCAATATCACAAACGTTTTGTTTCTAGTTCTTTGCATGGTCTTTATTGCAGCACGGCGTTGATATAATTTTTTGGCCAACATTTGTGTTTCATTCCTGCAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCAGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTTATCAAGGTGAGCCCTCTGTTTAGATAGGTTTATTTTGCGTTGGGAGTCTGTGTTTAATGACGTTTGTACTTATTCAGTGGGTTTCATTCTTAATCGTTTTATTTCTCAATACGTTAGGATCTGTTGGTTCCTTCTGTGCTGCCACTTTTGTATGTCGAACTTTTTCTCTGTTGCAATTGTTTATTTATTTATTTTTATTTTGGTCGACCCTACTTTCTCCCATTTCTTTTCTCTCCATGAAAGTACGGTTTCTTCAGGGAAGTCACTTTTGTATGTAAATTTGAAAGTTTGGTTCTTTGATTCAATGATCTTTCAAGTTTTTAGGTTTAAGGGCTCTAGCAAACATCCTTGAACTATTATTGCTTGAGGTTTTCCCTAGTTTTCTTTTTCTGTTTCCTTTTTTTCTTTTTATAAAAGGTTTTCCTTTGTTTTCTTAGTTTGTTAACTGTTTGATGGGGGATGGTGCTAACCGTTAGAATTAGTGGGCTTGGCCCTTAGAGGAGTATTTATGGAAAGATTATGGGAAGACTTACCCTATTTCCTAAATGTTTTCCTTTTTTATTCTATTGTGTATTCTATTTATTCTCCCTTAGTGTACCTATAATTTATCAGAAAATAGTAAAACAACAATATCGTGGTTTTCCTCCTAGTACTCGAGTTTCCACGTAAGTCTTGGTTTTGTGTTTATTGCTTTTAATATGGTATTAGAGCAGGTGGTCCAGGAGGCCCTGTGTTCAAGCCCCTGCATTGTTGTTTTCTCCCCAACTAAAATTGATCTCCACTTGTTGGGCCTTCCAAATATTTCAAGCCTCCAAATGAGGAAGAGTGTTAGTGATATATAATTAAATTTGCCTTCAACTACTAGCTTAAGCTTTTGGATGAACTGGTGGCTTCATACAAACAATTATATTTTGGAGGATAGTTGGGAGAAGAAAAGCCCGTTTATGCCGCTTTCCTCGGCTCTATCACTTGTTAGATAGAGAATGCACTCGATATCCTTTGTTTTGCCCTCTTTTGTTATTTTCTTCTTGTTGCCCCTTCATACCCTTACTGACCAAGAGGCAGTTGAGGTAGTTGGCCTTTGTCTTCTTTCTATTGTTCCCAAAAAAAAAGTGTTTCAACAAGTGTTCCATCATGGATGAAGGGATTCCAAATTTTGGGCTTCCAAGCCATCTAAGGGTTTCTCTTGTAACACTTTTTTTCATATGTTCTTTGCTCCTTCCTCTCAGTTTGGGTGCGTTTGCATTCTCCTCTCTTTGGCTGGCTAAAACTCTAAAATGTTGAAGTCTTTGTTTGGCAAGTTCTGGATGGGAAAGTAAACACACAAGATCATCTACAAAGACATTCATCATTCACTCTATTGCAATAGTATATTTTTTGTTGCAAGGAGGATGACCTTGAATATCTTTGAGTCTTTGTCTTCTTTTTTTTCTATTTATTTTTTTTATGAGTATCTTGTCTAGCTTACGCATGCTGAATAATCTTGTGAGACAACCTGCCTAATCCTACAGTATTTGGATAGAGGAACAATACGATTTTTAGAGGGTCTTGTGCAGTGTAGTTGGGGTATTTTTGCTACAACCCAACTAAACTCGTGGGATATTAAACCTTCAGTAGGTGAATATCATGGATTGAGCCTATGACCTCTTAGCCTTAGAAGCATCTCGCGGCATAGTTGTTTTTGTCCATTTTGTGGGAATTTAGATAGAGGAACAATAGGATTTTTAGAGGGTCTAAAAGATATGGAGATGAGCCCTGTGTGGGTGTTTGTTTGGTTTAATTCCTCATTATGGGTGTCTAATATTCAAGCTTTTTGTAATCGCCAGCATGATTTGATTCTTTTCGATTGAAATCCTTTCTTGTTGTTGAGATGAGGCTGTTTTCTTTTTTATTTGTTTTTTGTGGTATGCCCTTTACCTTCATTCTTCTCGATAAAAGCTTGGTTTCTTATATAAAAAGAAAAAAAATGTTTTTTATGGCAAGGCCTCATTGTATAATTTCATTATTCTAACAATTCAAGAATGTAATAGATTTTCTTTTTCATGGTAACTTAACTGGAAATTATCATGGAAAGCTTACATTTAAGGAATGTTATTATAATAAATTTATTCCTCTTATAGTCTAGAATTGGGGAAATCTAACAAAGGAGGAAGAGTGGAGGAGTAAGGTAAGTATGCTCTCTCCTCTCTCCTCTCTTTGCTGCCTTCTCCTTTGATTTTCTGTACCTCTTCGGTGATTTCTCTAGCATCTTCTTCAATCCTCAGCTTCACTTTTAGTCTTCTCTGGGGTTTCTTTGGCTTAGTTCTTGCTCATGGAAGTAGCAAGTTGCAAAATACTTCATACACACTTTTGCATTTGGCTGGAAAACGACCACTTTCATGTGGAGGATGTGGAAGCTCAACGATCCCTAGTTGTCTCAAAAGCCCATCTGAATTGGTTCCGTGCAGCGATAGCAAAGTTAGTCAGGCCTCGAAGGATCGGTTCTTTCTAAATTTCAAGGAGTTAGACAATGGGGGAACGGAGATCTCAAAGTTCAGATCCGACATTGGCTGGGTTTAATGTTGCTATTTCTGGCCGGTTTCAGGTGGGCGTCAAACCATCAGGGTTTCTTCAGAGGAAGACAAAAAGGGGTGGTCGTCCTTCCTCCAGATGTTGGAACAGTTCTTATCAAACTTGAAGCATAAGAAATGGTTCTCGAGGCATCGCCTTCCAACTCAAATCCCTCCATAGTTCCAAAAGATCGTTAATAGAGAGTTAAGACCTGGGTTTTTCAGCTAATGATCAGAAGTTAGGAAACCTGAGCCATAGCAAAGGAAAGCTTGAATCCTTACAGCCCTCCCCTGTTTTGAAGTTGGGGATTTAGAACCCCTCGGTCTTTGTTTGAGCACCAGCAAAACAGAGCGTTCACTCGGGTCATTTGCATTTCCACCACTTGAGTAGCTGACCTCTCCTTATTGGGTGAAATCTTGAGGAAGATTTCAGCACTCTGGATCATTTCCAAGCTCTTTGTATATAATGATTGGAAGGATATTGTCAAAACTCTGGAGGCTCACTTTCAAGACAAAATCAGCTTCAATCCTTTGTATGCTGATAAGGCATTAATCCGCCTCTCTCGAAGGAATCTGGAAGATTTGGTTGAGACTCCCGGTAAATGCCAGCGTATTGGAATCTTCCATCTTTTAGTAAAAAAATGGAACAAGTTCAAACATGGCAGGCCAAAAATTATTTGAGGTTTTGAAGGGTGGTTATCCACAACAACTTACCGTTAGATTATTGGAAAAAGGATGTCTTTGTTGCAATTGGGAATTATTTTAGTGGCCTCGAGAGCATATCCTTGGATACATTGAATATGATTAATGTGTCTAAAGCTAAAATTAAGGTGAAGGAAAATCTTTGTGGTTTTTTACCGATAACAATCCAATCGAAAGATGATTTTTGTGGAAAATCTTATCTTAACTTTTGAGATATTGAAATTATTGAAGAGCCTTCGGCCGTTCAAGATGCCATCTCTATTAAGTATTTCTCAAATCTGCAAGAATTGATCTCGTCTTAAAAGATGAAGGGCTAGATTTTAATGTTTCCAACCAGGAATGGGATTCAATTCGTTTCTTTCAAAGTCAAGCTTCTCAAGGAACCCATGCATTGAATTCAATAGTAATCCTAGCCTAGCTTTACCGATCGAGGCTCCTTGCTCATTTTGTCGGAATCTTCCTCCTGCTGCAGTAAATTTGGTTAATCAATTCAAATTCGGAGGGAACTTGATTGGAAAAGGCAAAGAGTAGCCTTCTCATAAGAGAGAAAAATGCGGCTGAATCCTTTGCTTTGCCCAATAAGAATCCATGTGCCACACATCCTTTAACCAAGCAATTAAACTCCTCTCAGATTAATTCGGCTGACATCTTTTTAAAAAATGGACAGATGGCATCCTCTTACACGTTAGATGCTAAAAAACCTGCAAAATTTTAGCAGTTGCTCATTGGGCGTAAGAACTTTTAGTTCCCTCTTCAACGGATGCTCCAGAAACCTTTAAAATACCTTCAAAGCATGCTCGTTTCAACTCCGCATCTTTTAATTCTCTCTTATCTTCTTCTCTCCATTCCTCATTAAAGTCAGGCCCAAGAGAAAGATTGAAAAAAAAGAAAATGTTAGAAAATCTTCCCACATTACCTCAAGCCCTTCCCAAAGTTTTTCATCCGAAAGAAAAAATCTAAGAATTTTTAGGCCAAACAATCTTTAAAAGCCCAGATACTTGAAGATCAAGCTCTTGATTTGATAAAGGCAATCTGCGCCCACTCTCATTCCTCAGTCCAATCCAGCAGATCCAAGTTGTTTTTGAAGGCTAATCCAGATTTGTTGAAAGTTAGTTGTACCCAGATTCTAGCTCCAACCTGTTCTACTAATTCAATTGGTCATGATTCTCACCCTACGTAGTTTAAATATTTAGAGTTCTATTTGCCCCAACGGGAAGGTAAAACTTTTTAGGGCTCTCTAAGCAAAACCCTTATCAATCCCTCTAGAAAGAAGGGCGAGTCTTCCTTTGACTCTTCTTTCGGCATTAGCAATGAGGAATTGGAGTTTTCTGCTAAGTCATCCAAGTTTGAGAGGCAAAAGCATTATGAGCCTTTAGAAACAGATCTTAATGCACTGTTTCATTGCAAGGAAGACTTGAAATCTGAAAATTTGCCGTTTGCTACCCGCTGTGCCCAGCTTGCGAAATACCAGATCATCTAAAGTCAATAGTTGTCGACTGTGAAATTATTCTAATTTGATTCTTTAGATACTTAAATGTAAGTTTCTCAAAAGCTTGGTCCAGTTTCTGGCTTTCCTTAATTTCTCTTCATGTGGGTGGCAAGTAAAATCGCACTGATTGTGGTAGATGACTTGAGATTGGTGGTCTTGATCTTTGTTTCTTTGGCCTGCCAAAGGGAAGTAACTTCTGGGGTTTGTTTTTTGAAATAATGGCTGATGGTATTGAAAACTTCTTCGAGCTTCCTCTGGATTCAGTTTATATTGGCAAGACAGATTTGAGGCAATTGTTTGCATCTTCTAGGCGACTCTCTCTCCAATCATTTTGAAGATTTTGGTTTGCTAGTTTTCAGTTTCAAATGGGTTCCTTACGAGAGAACTTTAAGTTTTGCTTTGTATTTTGCTTTCTACGTTTGTTTTATCTTTGAGTCGTTTGTTTTAATTTGTTTAGATTCCATTGAAATTCGTTTTTAGGTTGCCTTCTTTTTGTTAGCCTAAGCTAGCTTCGGGTTTAGTCTTGACTGTATTCTTTTAGTTTGTCTTTGTATAATACTCTTGTATTTTGAGCTTAGGTCTCATTTATTATCATTAATAAAGATACTTGTCTCTGCTTAAAAAAAAGTCTAGAATCCAGATAAAAGTTTATTACAAATAGTATTCTTGCTTGTATCTGGTTTCTTCCTGGAAAAACGTGGAATGATTGTGTTAAGAGTATTACTGGTAACATACTAACCCTAAAATCAGTTCCTAATTCTTCTTCACTAGGAACATACTGGGATACTATTAGACACTTAATGCTTTGTTATTTTGTCGTTAGTTTGTTAGGGTGAGTTGGGATATTTTTGCTGATTGATATTAACTTTTTACCATCTAGTTCTCAGAATCAGGATCCTACCCTAACAGATCCTAGGGAAGAATTAAAAGATTAATGTTTTGTGGTTGGTATGCTAATTTTTTATATTGTTAAAGATGGAGCATCATGATCAGGATTTGGTAACCTCCGATATTTAATTTTAAGTGAAGAGTATGTCTGGATATATTTTCTTTTTAAGATTCCCCAACTCTCTAGTCTCAATTAGTTCAAATAGTTATCTAATTGATGACTACCTGTCCAAAATATTTTTTAAAAATCTTGAAAGCACTCCCCTCTCTCCTTTTTCAAGTTTATAATAGGTGTTTCTTTTTCACTAGTAAAGTTCATTTGAAATTGTCTCAATGCAATCCTGTATTTCACCTAAAGCTCTTTGCACTATATCTGAGGAATAACGTGACACATTTTTATTACTTCCTTGAAATCAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATGGAAGATTCTTGAGTCACATGTCCTAGTGAGCTTCTAATCTATCTCTGCCACTTTCCCCATTTGTAGAAACGAAAGGTTGAACGAGAACTTCAGTCATGTATGTATATAATCTATCTCTAGTTGAGCTGATAGCATCCACTTTTGAATGTTGATTCATACAAAGATTCTACTATACAGTATATCTGTTTTATTATCCTATCATCTGTGTTTTTTAGTATCAATTTCGAGAAGGTGACAAATCCAAATCCAGGTAGATCTTCTATCTCAAGGGATGTAAACTATTCCTTGTTTTTTCTTTAATCTATGGCCTTTTCTGTACTTTGGCATGGACCATATCACATTGGCTGTATACATTTTCTTCCTTTTGTTTTTGTCATAGAGACTGTCACCTTCTCAATAGTAAACGGTTGTTTTTCTGGTTTATTTGGAACTATTGGGCTGTTTGGTGAACCGTGATGGAATGAGTTTGCAATGTAATATACTCGAAAACTCTATGTTTGGATTAGGTGTATTGGGCTTGATTTGTAATACTAAACTTATTCCATTCTGACAGTTTTCAATCC

mRNA sequence

AGACACTTCTAGGTAGTTTTTAAGTTGGTTTGAGGGTGAAATTGTTGTTGAAGTAATTTTGAGACTTGAAATGCTACTTTCACACATTTTAAAAACCTTTTAGGTTGGCATTGAGTTTGAAAGTCAAACTTAGGAATTTTTAGGTTGGTTTTGGTTTTCACCTTGAAAGTCTCATTTAGGCATTTTAAAGATACGTTGATAGTTAAAGTAACACTTAGACACTTATTGGGTACTTTTTAGATTGATTTGAAAGTAAAATTGATATTTTGAAGTAATATTTGAGATTTGGAGTGCTACTTTCACAAAAGCCCATGGGATGTCTCGAATCCGAAGCAGCCACCAAGCAAATCCCTAACCCAAGTTGGAGTGCCCGAATCCAACCCTAGCCTGCCCGATTTCCTTCCGTTCTTTTCCTCTATGTAGATCATCCTACCGTTTCCCAGATTTCCGACCACAAACACCTTCCTATCTATTTTGAACTTTCCCATCTCGTAGCTTTCCTTACAGTTTTTGAGAGAAAAGTTAGAGAGAGAATAGGGAATCTACTTTTTTGAGGATCTATATTGTTCATCGTTAATGCCTTCACAATCTATTGGATGTGGCAGAAACCTTAAACCTGGTTTTTTGGTGAAGAGATCCTTGTAATAACGGATGAATTCAGCTTTAATTGAGATGTTGACGTTTATTACTTATTAGGACACAGCCAGCATAGCTCTTGATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTCCAAAATGTTGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCAGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTTATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATGGAAGATTCTTGAGTCACATGTCCTAGTGAGCTTCTAATCTATCTCTGCCACTTTCCCCATTTGTAGAAACGAAAGGTTGAACGAGAACTTCAGTCATGTATGTATATAATCTATCTCTAGTTGAGCTGATAGCATCCACTTTTGAATGTTGATTCATACAAAGATTCTACTATACAGTATATCTGTTTTATTATCCTATCATCTGTGTTTTTTAGTATCAATTTCGAGAAGGTGACAAATCCAAATCCAGGTAGATCTTCTATCTCAAGGGATGTAAACTATTCCTTGTTTTTTCTTTAATCTATGGCCTTTTCTGTACTTTGGCATGGACCATATCACATTGGCTGTATACATTTTCTTCCTTTTGTTTTTGTCATAGAGACTGTCACCTTCTCAATAGTAAACGGTTGTTTTTCTGGTTTATTTGGAACTATTGGGCTGTTTGGTGAACCGTGATGGAATGAGTTTGCAATGTAATATACTCGAAAACTCTATGTTTGGATTAGGTGTATTGGGCTTGATTTGTAATACTAAACTTATTCCATTCTGACAGTTTTCAATCC

Coding sequence (CDS)

ATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTCCAAAATGTTGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCAGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTTATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATGGAAGATTCTTGA

Protein sequence

MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS
Homology
[Close]
BLAST of MELO3C008876.2 vs. NCBI nr
Match: XP_008442051.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_008442052.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_016899531.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 2.9e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]
BLAST of MELO3C008876.2 vs. NCBI nr
Match: XP_004144648.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >XP_011653960.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >XP_011653961.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus])

HSP 1 Score: 240.0 bits (611), Expect = 4.2e-60
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTIDDYQVK+EDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 118

[Close]
BLAST of MELO3C008876.2 vs. NCBI nr
Match: XP_022927640.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >XP_022927641.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata])

HSP 1 Score: 236.9 bits (603), Expect = 3.5e-59
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS 118

[Close]
BLAST of MELO3C008876.2 vs. NCBI nr
Match: XP_023520392.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520393.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.7 bits (600), Expect = 7.9e-59
Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQVKMED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDA 118

[Close]
BLAST of MELO3C008876.2 vs. NCBI nr
Match: XP_022142440.1 (mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP_022142441.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia])

HSP 1 Score: 234.2 bits (596), Expect = 2.3e-58
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 118

[Close]
BLAST of MELO3C008876.2 vs. TAIR10
Match: AT3G01435.1 (Expressed protein)

HSP 1 Score: 183.0 bits (463), Expect = 1.1e-46
Identity = 83/111 (74.77%), Postives = 101/111 (90.99%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]
BLAST of MELO3C008876.2 vs. Swiss-Prot
Match: sp|Q6ID77|MED11_ARATH (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana OX=3702 GN=MED11 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.0e-45
Identity = 83/111 (74.77%), Postives = 101/111 (90.99%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]
BLAST of MELO3C008876.2 vs. TrEMBL
Match: tr|A0A1S3B5G7|A0A1S3B5G7_CUCME (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 GN=LOC103486032 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]
BLAST of MELO3C008876.2 vs. TrEMBL
Match: tr|A0A0A0L450|A0A0A0L450_CUCSA (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=3659 GN=MED11 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.9e-56
Identity = 115/140 (82.14%), Postives = 117/140 (83.57%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 60
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMI 119
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]
BLAST of MELO3C008876.2 vs. TrEMBL
Match: tr|A0A061GG64|A0A061GG64_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao OX=3641 GN=MED11 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.0e-51
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

[Close]
BLAST of MELO3C008876.2 vs. TrEMBL
Match: tr|A0A2P5Y7N4|A0A2P5Y7N4_GOSBA (Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium barbadense OX=3634 GN=MED11 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.0e-51
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

[Close]
BLAST of MELO3C008876.2 vs. TrEMBL
Match: tr|A0A1R3I2R5|A0A1R3I2R5_COCAP (Mediator of RNA polymerase II transcription subunit 11 OS=Corchorus capsularis OX=210143 GN=MED11 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.2e-51
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPMGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

The following BLAST results are available for this feature:
BLAST of MELO3C008876.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442051.12.9e-61100.00PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]... [more]
XP_004144648.14.2e-6097.46PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativ... [more]
XP_022927640.13.5e-5997.46mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita mos... [more]
XP_023520392.17.9e-5996.61mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pep... [more]
XP_022142440.12.3e-5895.76mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP... [more]
BLAST of MELO3C008876.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G01435.11.1e-4674.77Expressed protein[more]
BLAST of MELO3C008876.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q6ID77|MED11_ARATH2.0e-4574.77Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana O... [more]
BLAST of MELO3C008876.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B5G7|A0A1S3B5G7_CUCME1.9e-61100.00Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 G... [more]
tr|A0A0A0L450|A0A0A0L450_CUCSA1.9e-5682.14Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=365... [more]
tr|A0A061GG64|A0A061GG64_THECC4.0e-5186.61Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao OX=364... [more]
tr|A0A2P5Y7N4|A0A2P5Y7N4_GOSBA4.0e-5186.61Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium barbadense O... [more]
tr|A0A1R3I2R5|A0A1R3I2R5_COCAP5.2e-5186.61Mediator of RNA polymerase II transcription subunit 11 OS=Corchorus capsularis O... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: INTERPRO
TermDefinition
IPR019404Mediator_Med11
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016592 mediator complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
molecular_function GO:0003712 transcription cofactor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008876.2.1MELO3C008876.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019404Mediator complex, subunit Med11PFAMPF10280Med11coord: 8..110
e-value: 1.1E-13
score: 51.7
IPR019404Mediator complex, subunit Med11PANTHERPTHR22890UNCHARACTERIZEDcoord: 1..114

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C008876.2Csa4G594450Cucumber (Chinese Long) v2cumedB322
MELO3C008876.2CSPI04G21350Wild cucumber (PI 183967)cpimedB326
MELO3C008876.2CsGy4G019920Cucumber (Gy14) v2cgybmedB287
MELO3C008876.2CsaV3_4G031690Cucumber (Chinese Long) v3cucmedB333
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008876.2Watermelon (97103) v2medwmbB538
MELO3C008876.2Wax gourdmedwgoB666
MELO3C008876.2Bottle gourd (USVL1VR-Ls)lsimedB164
MELO3C008876.2Watermelon (Charleston Gray)medwcgB532
MELO3C008876.2Watermelon (97103) v1medwmB575