MELO3C008861 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008861
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionArginine--tRNA ligase
Locationchr8 : 23489746 .. 23490163 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTGTGGAATTTTCCAATCAAGGTTGAATTGGTTTCAACCTCAACTTTGGGTAAGTTGATTTGAGATGATTTTTGGTCTTTAACCAATTGTTAAATTTATTAGTTAAGTTATAGGTTTCCCTTACTGTTTAGGACCTATTCATTTGAAAGCTTTGACTGTGACTGTTAGGAAAGATTTGTTAGCTAATCTCGAGATAAGAGATTCTACTACTAGACCTGGCGTGGTGGACCTATTCTACAAAGGATACATCAACACAAAAGAGCATTACGCCAAGATCAAAGGAAAAAAAGGAGACTTGAGGCCTGATGCCATCAACACGATGTATGGGTTGGAAAATAATGAGGTTGGTCATGTGATATTCAAGAATCCAAAGGATCGCGATTTACAAGAGGCCTTAGAGAAAGTTAGCTAG

mRNA sequence

ATGGAGCTGTGGAATTTTCCAATCAAGGTTGAATTGGTTTCAACCTCAACTTTGGGACCTATTCATTTGAAAGCTTTGACTGTGACTGTTAGGAAAGATTTGTTAGCTAATCTCGAGATAAGAGATTCTACTACTAGACCTGGCGTGGTGGACCTATTCTACAAAGGATACATCAACACAAAAGAGCATTACGCCAAGATCAAAGGAAAAAAAGGAGACTTGAGGCCTGATGCCATCAACACGATGTATGGGTTGGAAAATAATGAGGTTGGTCATGTGATATTCAAGAATCCAAAGGATCGCGATTTACAAGAGGCCTTAGAGAAAGTTAGCTAG

Coding sequence (CDS)

ATGGAGCTGTGGAATTTTCCAATCAAGGTTGAATTGGTTTCAACCTCAACTTTGGGACCTATTCATTTGAAAGCTTTGACTGTGACTGTTAGGAAAGATTTGTTAGCTAATCTCGAGATAAGAGATTCTACTACTAGACCTGGCGTGGTGGACCTATTCTACAAAGGATACATCAACACAAAAGAGCATTACGCCAAGATCAAAGGAAAAAAAGGAGACTTGAGGCCTGATGCCATCAACACGATGTATGGGTTGGAAAATAATGAGGTTGGTCATGTGATATTCAAGAATCCAAAGGATCGCGATTTACAAGAGGCCTTAGAGAAAGTTAGCTAG

Protein sequence

MELWNFPIKVELVSTSTLGPIHLKALTVTVRKDLLANLEIRDSTTRPGVVDLFYKGYINTKEHYAKIKGKKGDLRPDAINTMYGLENNEVGHVIFKNPKDRDLQEALEKVS*
Homology
[Close]
BLAST of MELO3C008861 vs. TrEMBL
Match: A0A0A0K4F2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G327740 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-06
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 46  RPGVVDLFYKGYINTKEHYAKIKGKKGDLRPDAINTMYGLENNEVGHVIFKNPKDRDLQE 105
           R  VV+LFYK +I+ +E+Y  +K +      D IN  YGL+ NEVG VIFKN   +D+ +
Sbjct: 95  RVDVVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDD 154

Query: 106 ALEKVS 112
            L+ ++
Sbjct: 155 GLKTIT 160

[Close]
BLAST of MELO3C008861 vs. NCBI nr
Match: gi|659109371|ref|XP_008454680.1| (PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 5.5e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1 

Query: 50  VDLFYKGYINTKEHYAKIKGKKGDLRPDAINTMYGLENNEVGHVIFKNPKDRDLQEALEK 109
           ++LFYKGYINT +HY  + GKK D RPD IN +YGLE+N +GH IFK   D + Q+ALEK
Sbjct: 124 MNLFYKGYINTVKHYTIVNGKKVDFRPDEINALYGLEDNVIGHAIFKELMDLNKQDALEK 183

Query: 110 VS 112
           V+
Sbjct: 184 VA 185

[Close]
BLAST of MELO3C008861 vs. NCBI nr
Match: gi|700189302|gb|KGN44535.1| (hypothetical protein Csa_7G327740 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 46  RPGVVDLFYKGYINTKEHYAKIKGKKGDLRPDAINTMYGLENNEVGHVIFKNPKDRDLQE 105
           R  VV+LFYK +I+ +E+Y  +K +      D IN  YGL+ NEVG VIFKN   +D+ +
Sbjct: 95  RVDVVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDD 154

Query: 106 ALEKVS 112
            L+ ++
Sbjct: 155 GLKTIT 160

The following BLAST results are available for this feature:
BLAST of MELO3C008861 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4F2_CUCSA2.6e-0642.42Uncharacterized protein OS=Cucumis sativus GN=Csa_7G327740 PE=4 SV=1[more]
BLAST of MELO3C008861 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109371|ref|XP_008454680.1|5.5e-1359.68PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo][more]
gi|700189302|gb|KGN44535.1|3.8e-0642.42hypothetical protein Csa_7G327740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008861T1MELO3C008861T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008861Silver-seed gourdcarmeB0586
MELO3C008861Silver-seed gourdcarmeB0998
MELO3C008861Watermelon (97103) v2mewmbB542
MELO3C008861Wax gourdmewgoB649
MELO3C008861Wax gourdmewgoB652
MELO3C008861Wax gourdmewgoB660
MELO3C008861Cucurbita maxima (Rimu)cmameB610
MELO3C008861Cucurbita maxima (Rimu)cmameB801
MELO3C008861Cucurbita moschata (Rifu)cmomeB599
MELO3C008861Cucurbita moschata (Rifu)cmomeB785
MELO3C008861Watermelon (Charleston Gray)mewcgB533
MELO3C008861Watermelon (97103) v1mewmB587
MELO3C008861Cucurbita pepo (Zucchini)cpemeB070
MELO3C008861Cucurbita pepo (Zucchini)cpemeB459
MELO3C008861Bottle gourd (USVL1VR-Ls)lsimeB157